RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781104|ref|YP_003065517.1| hypothetical protein
CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
(125 letters)
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 28.8 bits (64), Expect = 0.13
Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 26/123 (21%)
Query: 8 IILGVVLASITITYSIKHETEGKKEKLR-----ILENKITSEQNYIDLLKAQWALL---- 58
+ + S Y I T G L + + E L A L+
Sbjct: 20 LKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79
Query: 59 -----------------IQPDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLP 101
I + ++ + K TNP+N LKK +
Sbjct: 80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYD 139
Query: 102 ENR 104
+N+
Sbjct: 140 KNK 142
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 28.8 bits (64), Expect = 0.15
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 45 QNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENR 104
++ +DL+ I +K +V + L A NP++++TY K + P+ R
Sbjct: 88 ESRLDLVNKNLN--ILSSIVKPVVDSGFDGIFLVAANPVDILTY----ATWKFSGFPKER 141
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 28.5 bits (64), Expect = 0.20
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 34 LRILENKITSEQNYIDLLKAQW--ALLIQPDRIKDLVSLYQK 73
+ +E+ + +YID +K W + +I D +K+ ++ Y+
Sbjct: 25 PKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKD 66
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 28.1 bits (62), Expect = 0.22
Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 59 IQPDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENR 104
+ + +++ + + TNP++++TY K + + +
Sbjct: 95 VMKEIARNVSKYAPDSIVIVVTNPVDVLTY----FFLKESGMDPRK 136
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 144
Score = 27.3 bits (60), Expect = 0.39
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 79 ATNPINLITYDDLARLKKHTLLPENR 104
+NP+N KKH + N+
Sbjct: 116 ISNPVNSTIPITAEVFKKHGVYNPNK 141
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 26.6 bits (58), Expect = 0.62
Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 25/86 (29%)
Query: 40 KITSEQNYIDLLKAQWALL---------------------IQPDRIKDLVSLYQKELQLQ 78
K+T +Y D + ++ I + +++ + + +
Sbjct: 57 KVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 79 ATNPINLITYDDLARLKKHTLLPENR 104
+NP++++T+ + LP+ R
Sbjct: 117 VSNPLDIMTH----VAWVRSGLPKER 138
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 26.6 bits (58), Expect = 0.62
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 42 TSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLP 101
+DL I D K +V + L TNP++++TY + K + P
Sbjct: 82 KPGMTRLDLAHKNAG--IIKDIAKKIVENAPESKILVVTNPMDVMTY----IMWKESGKP 135
Query: 102 ENR 104
N
Sbjct: 136 RNE 138
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 26.6 bits (59), Expect = 0.75
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 34 LRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQK 73
L+ ++ I +YID +K W + +++ +S ++
Sbjct: 28 LQFFKDAIAGASDYIDFVKFGWGTSLLTKDLEEKISTLKE 67
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 26.6 bits (58), Expect = 0.75
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 39 NKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHT 98
+ + LK +++ +L + + +NP+++IT + T
Sbjct: 83 QQDNPTGDRFAELKFTSSMVQ--SVGTNLKESGFHGVLVVISNPVDVITA----LFQHVT 136
Query: 99 LLPENR 104
P ++
Sbjct: 137 GFPAHK 142
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 25.7 bits (56), Expect = 1.3
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 79 ATNPINLITYDDLARLKKHTLLPENR 104
+NP++L+ L + +
Sbjct: 118 TSNPVDLLNR----HLYEAGDRSREQ 139
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 25.4 bits (55), Expect = 1.5
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 17 ITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQ 76
+ I + + + + +DL+ A I ++ +++ + L
Sbjct: 62 VDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIA--IFRSIVESVMASGFQGLF 119
Query: 77 LQATNPINLITYDDLARLKKHTLLPENR 104
L ATNP++++TY K + LP R
Sbjct: 120 LVATNPVDILTY----ATWKFSGLPHER 143
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 25.0 bits (54), Expect = 2.2
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 38 ENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKH 97
++ S Q +DLL+ A I + ++ + TNP++++TY + K
Sbjct: 96 GARMVSGQTRLDLLQRNVA--IMKAIVPGVIQNSPDCKIIVVTNPVDILTY----VVWKI 149
Query: 98 TLLPENR 104
+ P R
Sbjct: 150 SGFPVGR 156
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii
[TaxId: 5811]}
Length = 154
Score = 23.9 bits (51), Expect = 4.0
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 64 IKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENR 104
+++ K + TNP++ + + + + +P N
Sbjct: 114 GQNIKKYCPKTFIIVVTNPLDCMVKV----MCEASGVPTNM 150
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 23.8 bits (51), Expect = 4.9
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 63 RIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLL 100
RI++ V+ Y++ + + +D+ +HT L
Sbjct: 9 RIEEAVAKYREFYEFKPVR--ESAGIEDVKSAIEHTNL 44
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
enterocolitica [TaxId: 630]}
Length = 338
Score = 23.2 bits (50), Expect = 7.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 69 SLYQKELQLQATNP 82
S+Y++ LQ +A NP
Sbjct: 1 SIYEQYLQAKADNP 14
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 23.2 bits (50), Expect = 7.6
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 68 VSLYQKELQLQATNP 82
++ Y + L+L+ NP
Sbjct: 1 MNHYTRWLELKEQNP 15
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus
influenzae [TaxId: 727]}
Length = 135
Score = 23.0 bits (49), Expect = 8.9
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 34 LRILENKITSEQNYIDLLKAQWALLIQPDRIKDLV 68
L +L+ S + + + + +QP ++D +
Sbjct: 2 LNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTL 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.367
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 440,836
Number of extensions: 18696
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 27
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.7 bits)