BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781104|ref|YP_003065517.1| hypothetical protein
CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score =  250 bits (639), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ 60
           MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ
Sbjct: 1   MFKTLDFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ 60

Query: 61  PDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENRSNLPKRTVERRQHRKE 120
           PDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENRSNLPKRTVERRQHRKE
Sbjct: 61  PDRIKDLVSLYQKELQLQATNPINLITYDDLARLKKHTLLPENRSNLPKRTVERRQHRKE 120

Query: 121 IVQQQ 125
           IVQQQ
Sbjct: 121 IVQQQ 125


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 27.7 bits (60), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 53  AQWALLIQPDRIKDLVSLYQKELQLQATN 81
           A W L   PD + DL  LY KE ++   N
Sbjct: 497 AGWTLF-SPDEVSDLHDLYGKEFEIAYEN 524


>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 503

 Score = 21.9 bits (45), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 106 NLPKRTVERRQH 117
           NLP+ T ERR H
Sbjct: 14  NLPENTPERRSH 25


>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score = 21.6 bits (44), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 7  FIILGVVLASITITYSIKHETEG 29
          FI+   V  SIT+ ++I H+ + 
Sbjct: 35 FIVHNTVYLSITVPHTIAHQLQS 57


>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score = 21.6 bits (44), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 7  FIILGVVLASITITYSIKHETEG 29
          FI+   V  SIT+ ++I H+ + 
Sbjct: 35 FIVHNTVYLSITVPHTIAHQLQS 57


>gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 204

 Score = 21.6 bits (44), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 94  LKKHTLLPENR 104
           + KHT+LPE R
Sbjct: 193 INKHTILPEER 203


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 573

 Score = 20.8 bits (42), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 8/42 (19%)

Query: 34 LRILEN------KITSEQNYIDLLKAQWALLIQPD-RIKDLV 68
          ++I EN      +  SE+ Y++L   Q A+L  PD R KD++
Sbjct: 1  MKIFENIPQVIGEALSERGYVNLTSVQEAIL-NPDLREKDVL 41


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,861
Number of Sequences: 1233
Number of extensions: 2887
Number of successful extensions: 13
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 10
length of query: 125
length of database: 328,796
effective HSP length: 64
effective length of query: 61
effective length of database: 249,884
effective search space: 15242924
effective search space used: 15242924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)