HHsearch alignment for GI: 254781106 and conserved domain: TIGR01439
>TIGR01439 lp_hng_hel_AbrB transcriptional regulator, AbrB family; InterPro: IPR006339 This DNA-binding domain is found in proteins like AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. .
Probab=95.55 E-value=0.011 Score=37.72 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=26.3
Q ss_pred CEECCCCCEEECHHHHHHHHHCCCCCEEECCCCCCCEEECCCH
Q ss_conf 1056766271078899998524898499516566441304523
Q gi|254781106|r 10 QKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNS 52 (145)
Q Consensus 10 ~~lD~KGRi~iPa~fR~~L~~~~~~~lv~~~~~~~~~l~~~~~ 52 (145)
T Consensus 2 v~v~~kG~i~IPK~iR~~lgl~eGd~l~~~~~-~d~~i~l~p~ 43 (44)
T TIGR01439 2 VKVTKKGQIVIPKEIREKLGLKEGDKLEVIRV-EDGEIILRPK 43 (44)
T ss_pred EEECCCCEEEECHHHHHHCCCCCCCEEEEEEE-CCCEEEEEEC
T ss_conf 57688762992738964069999987889882-7987989833