HHsearch alignment for GI: 254781106 and conserved domain: TIGR01439
>TIGR01439 lp_hng_hel_AbrB transcriptional regulator, AbrB family; InterPro: IPR006339 This DNA-binding domain is found in proteins like AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. .
Probab=94.43 E-value=0.069 Score=32.73 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCCCCCCEEECCHHHHHHCCCC-C-EEEEE-ECCCEEEEC
Q ss_conf 2217861475198999870998-5-39999-419989962
Q gi|254781106|r 86 LKMDSEGRILMTDFIRVFTGIE-N-EVTFV-GRGNYFQLW 122 (145)
Q Consensus 86 ~~~D~~GRi~ip~~lr~~agi~-~-ev~~v-G~g~~fEIW 122 (145)
T Consensus 2 v~v~~kG~i~IPK~iR~~lgl~eGd~l~~~~~~d~~i~l~ 41 (44)
T TIGR01439 2 VKVTKKGQIVIPKEIREKLGLKEGDKLEVIRVEDGEIILR 41 (44)
T ss_pred EEECCCCEEEECHHHHHHCCCCCCCEEEEEEECCCEEEEE
T ss_conf 5768876299273896406999998788988279879898