HHSEARCH alignment of GI: 254781106 and SCOP domain: d1yfba1

Alignment

>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}

Probab=91.58  E-value=0.059  Score=30.33  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             CCCEECCCCCEEECHHHHHHHHHCCCCCEEECC
Q ss_conf             121056766271078899998524898499516
Q gi|254781106|r    8 VTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQ   40 (145)
Q Consensus         8 ~~~~lD~KGRi~iPa~fR~~L~~~~~~~lv~~~   40 (145)
                      .-+++|+=||+.||...|+.|.-.....+-++.
T Consensus         6 ivRkiD~LGRiViPkElR~~L~I~~~d~lEifv   38 (51)
T d1yfba1           6 IVRKVDELGRVVIPIELRRTLGIAEKDALEIYV   38 (51)
T ss_dssp             EEEECCTTCEEECCHHHHHHTTCCTTCEEEEEE
T ss_pred             EEEEECCCCCEECCHHHHHHCCCCCCCCEEEEE
T ss_conf             487524688898209999765998899589998

SCOP domain information

class: All beta proteins
fold: Double-split beta-barrel
superfamily: AbrB/MazE/MraZ-like
family: AbrB N-terminal domain-like
domain: Transcription-state regulator AbrB, the N-terminal DNA recognition domain
species: Bacillus subtilis [TaxId: 1423]