RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781106|ref|YP_003065519.1| cell division protein MraZ
[Candidatus Liberibacter asiaticus str. psy62]
         (145 letters)



>d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma
           pneumoniae [TaxId: 2104]}
          Length = 141

 Score = 92.4 bits (229), Expect = 2e-20
 Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 4   FLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIA 63
            L      +D+K R+S+P   R                 F   + V      + + ++  
Sbjct: 6   LLGTFNITLDAKNRISLPAKLRAFFEGS-----IVINRGFENCLEVRKPQDFQKYFEQFN 60

Query: 64  EYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWN 123
            +         L  L+     F+ +D+ GR+L+ + +     ++ E+  +G+ ++ ++W+
Sbjct: 61  SFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWD 120

Query: 124 PQTFRKLQEESRN 136
            + +      S +
Sbjct: 121 KKLYEDYLANSES 133


>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
           [TaxId: 1352]}
          Length = 307

 Score = 24.9 bits (53), Expect = 2.5
 Identities = 10/109 (9%), Positives = 25/109 (22%), Gaps = 12/109 (11%)

Query: 47  ISVGNSDLLEYFEQKIAEYNPFSIQANQLSLL---------VHGGGIFLKMDSEGRILMT 97
           +++G + +L       A+       +  L  L          HG G  +      +    
Sbjct: 6   VALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAAD 65

Query: 98  DFI---RVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEESRNEYCRQLL 143
                                       N +  +   ++       Q++
Sbjct: 66  SEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVV 114


>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 128

 Score = 24.5 bits (53), Expect = 3.8
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 91  EGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKL 130
           EG + +            +V F+ +G+  +   P + R L
Sbjct: 80  EGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFL 119


>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
           central and FMN domains {Synechocystis sp. [TaxId:
           1143]}
          Length = 809

 Score = 23.4 bits (50), Expect = 8.9
 Identities = 3/22 (13%), Positives = 9/22 (40%)

Query: 115 RGNYFQLWNPQTFRKLQEESRN 136
            G  + + +P+  + L +    
Sbjct: 360 PGGEYHMNSPEMSKSLHKAVAA 381


>d2fdoa1 d.337.1.1 (A:1-92) Hypothetical protein AF2331
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 92

 Score = 23.1 bits (49), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%)

Query: 37 YCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSI 70
          YCF +F FPA      D+ +  E +I E   ++I
Sbjct: 48 YCFAEFAFPA------DIFDADEDEIDEMMKYAI 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 540,198
Number of extensions: 23485
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 8
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.9 bits)