RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781106|ref|YP_003065519.1| cell division protein MraZ [Candidatus Liberibacter asiaticus str. psy62] (145 letters) >d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma pneumoniae [TaxId: 2104]} Length = 141 Score = 92.4 bits (229), Expect = 2e-20 Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 5/133 (3%) Query: 4 FLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIA 63 L +D+K R+S+P R F + V + + ++ Sbjct: 6 LLGTFNITLDAKNRISLPAKLRAFFEGS-----IVINRGFENCLEVRKPQDFQKYFEQFN 60 Query: 64 EYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWN 123 + L L+ F+ +D+ GR+L+ + + ++ E+ +G+ ++ ++W+ Sbjct: 61 SFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWD 120 Query: 124 PQTFRKLQEESRN 136 + + S + Sbjct: 121 KKLYEDYLANSES 133 >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} Length = 307 Score = 24.9 bits (53), Expect = 2.5 Identities = 10/109 (9%), Positives = 25/109 (22%), Gaps = 12/109 (11%) Query: 47 ISVGNSDLLEYFEQKIAEYNPFSIQANQLSLL---------VHGGGIFLKMDSEGRILMT 97 +++G + +L A+ + L L HG G + + Sbjct: 6 VALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAAD 65 Query: 98 DFI---RVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEESRNEYCRQLL 143 N + + ++ Q++ Sbjct: 66 SEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVV 114 >d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Length = 128 Score = 24.5 bits (53), Expect = 3.8 Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 91 EGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKL 130 EG + + +V F+ +G+ + P + R L Sbjct: 80 EGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFL 119 >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 Score = 23.4 bits (50), Expect = 8.9 Identities = 3/22 (13%), Positives = 9/22 (40%) Query: 115 RGNYFQLWNPQTFRKLQEESRN 136 G + + +P+ + L + Sbjct: 360 PGGEYHMNSPEMSKSLHKAVAA 381 >d2fdoa1 d.337.1.1 (A:1-92) Hypothetical protein AF2331 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 92 Score = 23.1 bits (49), Expect = 8.9 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%) Query: 37 YCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSI 70 YCF +F FPA D+ + E +I E ++I Sbjct: 48 YCFAEFAFPA------DIFDADEDEIDEMMKYAI 75 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.327 0.142 0.423 Gapped Lambda K H 0.267 0.0622 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 540,198 Number of extensions: 23485 Number of successful extensions: 83 Number of sequences better than 10.0: 1 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 8 Length of query: 145 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 68 Effective length of database: 1,350,386 Effective search space: 91826248 Effective search space used: 91826248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 49 (22.9 bits)