RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus
Liberibacter asiaticus str. psy62]
(542 letters)
>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
bidirectional interconversion of glucose-1-phosphate
(G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
1,6-diphosphate intermediate, an important metabolic
step in prokaryotes and eukaryotes. In one direction,
G-1-P produced from sucrose catabolism is converted to
G-6-P, the first intermediate in glycolysis. In the
other direction, conversion of G-6-P to G-1-P generates
a substrate for synthesis of UDP-glucose which is
required for synthesis of a variety of cellular
constituents including cell wall polymers and
glycoproteins. The PGM1 family also includes a
non-enzymatic PGM-related protein (PGM-RP) thought to
play a structural role in eukaryotes, as well as
pp63/parafusin, a phosphoglycoprotein that plays an
important role in calcium-regulated exocytosis in
ciliated protozoans. PGM1 belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 548
Score = 853 bits (2206), Expect = 0.0
Identities = 309/547 (56%), Positives = 399/547 (72%), Gaps = 11/547 (2%)
Query: 4 TIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVD---CAEKTLVVGGDGRF 60
VPT PY+ QKPGTSGLRKKV VFQQ +Y ENF+Q+IFN + TLVVGGDGR+
Sbjct: 1 QTVPTKPYEGQKPGTSGLRKKVKVFQQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRY 60
Query: 61 YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQ 120
YN IQ IIKIAAANG ++++G+ G+LSTPAVS +IRK KA+GGIILTASHNP G
Sbjct: 61 YNKEAIQIIIKIAAANGVGKVVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEG 120
Query: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKEL--ANMTISVI 178
DFGIKYNTS+GG A E T+ I+E +KKIT Y+I + DVD++ IG + T+ VI
Sbjct: 121 DFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGVTKFGGKPFTVEVI 180
Query: 179 DPIENYVALMENIFDFDAIRKLLSF-GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRN 237
D +E+YV LM+ IFDFDAI+KLLS GF++ D M+ VTGPYAK+I +LGAP SV N
Sbjct: 181 DSVEDYVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVVN 240
Query: 238 FIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSL 297
PL DFGG HPDPNL +AKDL + M + DFGAA DGDGDR+MILGKG FV PSDS+
Sbjct: 241 CTPLPDFGGGHPDPNLTYAKDLVELMKSGE-PDFGAASDGDGDRNMILGKGFFVTPSDSV 299
Query: 298 AIMVANAGLIPGY-ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGM 356
A++ ANA LIP + GL GVARSMPTS ALDRVA+KL + LFETPTGWKFF NL++ G
Sbjct: 300 AVIAANAKLIPYFYKGGLKGVARSMPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGK 359
Query: 357 ITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDY 416
+++CGEESFGTGS+H REKDG+W++L WL+ILA R S+ DIV +HW YGRN+Y+RYDY
Sbjct: 360 LSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNVSVEDIVKEHWQKYGRNFYTRYDY 419
Query: 417 LGIPTEKAQDFMNDFRYRLKNLIGSSFIGQ---KIKQAGDFVYTDSTNGNVSDKQGIRVV 473
+ +E A M+ R + +L G G K+ +A DF YTD +G+VS KQG+R++
Sbjct: 420 EEVDSEAANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPVDGSVSKKQGLRII 479
Query: 474 FDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYI 533
F++ SRII+R+SGT + +T+R+YI++YE D SK+ + Q L L+E++ ++S L+ +
Sbjct: 480 FEDGSRIIFRLSGTGSSGATIRLYIESYEKDPSKYGLDAQVALKPLIEIALKLSKLKEFT 539
Query: 534 GHTNPSI 540
G P++
Sbjct: 540 GREEPTV 546
>gnl|CDD|35844 KOG0625, KOG0625, KOG0625, Phosphoglucomutase [Carbohydrate
transport and metabolism].
Length = 558
Score = 675 bits (1742), Expect = 0.0
Identities = 299/555 (53%), Positives = 393/555 (70%), Gaps = 24/555 (4%)
Query: 5 IVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEK---TLVVGGDGRFY 61
VPT PY+ QKPGTSGLRKKV VF+Q +YTENF+QAI N + + TLVVGGDGR+Y
Sbjct: 7 TVPTKPYEGQKPGTSGLRKKVKVFKQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYY 66
Query: 62 NHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKY-KASGGIILTASHNPAGATQ 120
N IQ I KIAAANG R+I+G+ GILSTPAVS +IRKY KA GGIILTASHNP G
Sbjct: 67 NKEAIQIIAKIAAANGVGRLIVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEG 126
Query: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIG-TKELANMTISVID 179
DFGIK+N +GG A E T+ I+E +K I+ Y+I + +D++ +G T T+ VID
Sbjct: 127 DFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDPKIDLSTVGKTSFDGPFTVEVID 186
Query: 180 PIENYVALMENIFDFDAIRKLLSF--GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRN 237
P+++YV LM+ IFDFD I+ LLS + D M+ VTGPY K I +LGAP S++N
Sbjct: 187 PVKDYVNLMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQN 246
Query: 238 FIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDS 296
+PLEDFGG HPDPNL +AKDL DR+ DFGAA DGDGDR+MILGK G FV PSDS
Sbjct: 247 CVPLEDFGGGHPDPNLTYAKDLVDRVD-RGEIDFGAAFDGDGDRNMILGKNGFFVTPSDS 305
Query: 297 LAIMVANAGLIPGYAT-GLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENG 355
+AI+ ANA IP + G+ G ARSMPTS ALDRVA+KL L ++E PTGWKFF NL++ G
Sbjct: 306 VAIIAANAEAIPYFRKQGVKGFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAG 365
Query: 356 MITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLL-DIVHKHWATYGRNYYSRY 414
++ICGEESFGTGS+H REKDGIW++L WL+ILA ++++ DIV +HWA YGRN+++RY
Sbjct: 366 KLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHNKQNVVEDIVKEHWAKYGRNFFTRY 425
Query: 415 DYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQ---------KIKQAGDFVYTDSTNGNVS 465
DY + E A M D L+ L+ SF+G+ K+ +A DF YTD +G+VS
Sbjct: 426 DYEEVEAEGANKMMED----LEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPVDGSVS 481
Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQR 525
KQG+R+VF++ SRI++R+SGT + +T+R+YI++YE D SK ++ Q L L++++ +
Sbjct: 482 KKQGLRIVFEDGSRIVFRLSGTGSSGATIRLYIESYEKDVSKIDQDAQVALKPLIDIALK 541
Query: 526 ISCLRHYIGHTNPSI 540
IS L+ + G P++
Sbjct: 542 ISKLKEFTGREAPTV 556
>gnl|CDD|30382 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 522 bits (1347), Expect = e-149
Identities = 197/539 (36%), Positives = 277/539 (51%), Gaps = 42/539 (7%)
Query: 6 VPTVPYQDQKPGTSGLRKKVSVFQQN-SYTENFIQAIFNNVDCAEK--TLVVGGDGRFYN 62
PT PYQD K GTSG R VF N ++ FIQAI + LVVGGD +
Sbjct: 8 DPTNPYQDVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALS 67
Query: 63 HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIR----KYKA-SGGIILTASHNPAG 117
IQ +++ AANG I+ G+GG TPA SH I KYKA + GI+LT SHNP
Sbjct: 68 EPAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPP- 126
Query: 118 ATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIG-TKELANMTIS 176
+D GIKYN +GG A E+ T+ I + Y+I +D+ IG + ++T+
Sbjct: 127 --EDGGIKYNPPNGGPAPEKVTDAIEA--RANDLYKIG---LLDVKRIGLDQAYGSLTVK 179
Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236
+IDP+++YV L+E IFDFDAIRK G R+ D + VTGPY K I E+ L TG +
Sbjct: 180 IIDPVKDYVELLEEIFDFDAIRK---AGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQ 236
Query: 237 NFIPLEDFGGCHPDPNLIHAK---DLYDRMM-MHDSADFGAACDGDGDRSMILGKG-IFV 291
N P DF G PD N+ ++ + D DF AA DGDGDR I+ G +
Sbjct: 237 NVDPTPDFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLM 296
Query: 292 NPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNL 351
NP+ SLA+ + L Y G+V V +++ +SAA+DRV KL L+E P G+K+F +
Sbjct: 297 NPNHSLAVAIEYLFLHRPYWGGIVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDG 356
Query: 352 LENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRG----ESLLDIVHKHWATYG 407
L+ G GEES G++ REK G+W+ NILA+ I +H+A G
Sbjct: 357 LDAGSFGFGGEES--AGASFLREKGGVWATDKDGNILALLAAEITAVTGKIPQEHYAELG 414
Query: 408 RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDK 467
RN+ R DY + E A RL+ L + Y GN +
Sbjct: 415 RNFG-RPDYERVDAEAANAQKA----RLRKLSPEMVSATTLAGDPITAYLTPAPGNGAAI 469
Query: 468 QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRI 526
G++V +N R SGT+ +T ++Y +++E D +HLK Q+ +++V +I
Sbjct: 470 GGLKVTTEN-GWFAARPSGTE---ATYKIYAESFEGD--EHLKQIQKEAAEIVSEVLKI 522
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model..
Length = 461
Score = 224 bits (574), Expect = 4e-59
Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 60/457 (13%)
Query: 48 AEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGI 107
+ +VVG D RF + + + ++ AANG + + + TPAVS ++K A+GG+
Sbjct: 38 GGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDR--PVPTPAVSWAVKKLGAAGGV 95
Query: 108 ILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGT 167
++TASHNP + G+K + GGSA + T IEA G
Sbjct: 96 MITASHNPP---EYNGVKVKPAFGGSALPEITAA-------------IEARLASGEPPGL 139
Query: 168 KELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERK 227
+ A I IDP +Y+ + ++ D +AIR+ G ++ +D M Y +E+L R
Sbjct: 140 EARAEGLIETIDPKPDYLEALRSLVDLEAIRE---AGLKVVVDPMYGAGAGYLEELL-RG 195
Query: 228 LGAPTGSVRNFI-PLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDR-SMIL 285
G +R PL FGG P+P + +L + + AD G A DGD DR +
Sbjct: 196 AGVDVEEIRAERDPL--FGGIPPEPIEKNLGELAEA-VKEGGADLGLATDGDADRIGAVD 252
Query: 286 GKGIFVNPSDSLAIM----VANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFET 341
KG F++P+ LA++ + N GL G V +++ T+ +DR+AEK L ++ET
Sbjct: 253 EKGNFLDPNQILALLLDYLLENKGL-----RG--PVVKTVSTTHLIDRIAEKHGLPVYET 305
Query: 342 PTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVH 400
P G+K+ + + I GEES G G H E+DGI + L L +A G+ L ++V
Sbjct: 306 PVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVA 365
Query: 401 KHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDST 460
+ YG +YY R D L + + + + +LKN S G K+ +
Sbjct: 366 ELEEEYGPSYYDRID-LRLTPAQKEAILE----KLKNEPPLSIAGGKVDE---------- 410
Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVY 497
V+ G+++V ++ S ++ R SGT+ LR+Y
Sbjct: 411 ---VNTIDGVKLVLEDGSWLLIRPSGTE---PLLRIY 441
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 355
Score = 202 bits (517), Expect = 1e-52
Identities = 98/346 (28%), Positives = 160/346 (46%), Gaps = 44/346 (12%)
Query: 84 GKGGILSTPAVSHLI-RKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDI 142
G G TP + + + ++GGI++TASHNP +D GIK+ G + ++ + I
Sbjct: 9 GVVGDDITPETAVALGQAIGSTGGIMITASHNPP---EDNGIKFVDPDGEPIASEEEKAI 65
Query: 143 FEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLS 202
+ E D + + ++ Y ++ +FD A+
Sbjct: 66 EDL---------AEKEDEPSAVAYELGGSVKAVDILQR---YFEALKKLFDVAALSN--- 110
Query: 203 FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL-----EDFGGCHPDPNLIHAK 257
F++ +D +N V GP A ++L KLGA IPL +FG +PDP
Sbjct: 111 KKFKVVVDSVNGVGGPIAPQLL-EKLGA------EVIPLNCEPDGNFGNINPDPG--SET 161
Query: 258 DLYDRMMMHD--SADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGL 314
+L + + ADFG A DGD DR +++ + G F++ + LA++ L
Sbjct: 162 NLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFN---PR 218
Query: 315 VGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSN-HSR 373
GV +++ +S ALD+VA+KL +K+ T TG+K+ ++ G + + GEES G
Sbjct: 219 GGVVKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHP 278
Query: 374 EKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGI 419
+DGI + L L ILA G+SL + ++ R YY R G
Sbjct: 279 GRDGISAALLLLEILANLGKSL----SELFSELPRYYYIRLKVRGW 320
>gnl|CDD|31306 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 180 bits (458), Expect = 8e-46
Identities = 118/505 (23%), Positives = 206/505 (40%), Gaps = 68/505 (13%)
Query: 17 GTSGLRKKVSVFQQNSYTENFIQAI---FNNV--DCAEKTLVVGGDGRFYNHIVIQKIIK 71
GT G+R T F + +V +VVG D R + ++ +
Sbjct: 11 GTDGIRGVAG----EELTPEFALKLGRALGSVLRKKGAPKVVVGRDTRLSSEMLAAALAA 66
Query: 72 IAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSG 131
+ G +G ++ TPAV+ RK A G+++TASHNP + GIK+ S G
Sbjct: 67 GLTSAGIDVYDLG---LVPTPAVAFATRKLGADAGVMITASHNPP---EYNGIKFFGSDG 120
Query: 132 GSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENI 191
G S+ E+I + + + D ++ Y+ ++++
Sbjct: 121 GKISDDIEEEI-----------EAILAEEVDLPRPSWGELGRLKRIPDALDRYIEFIKSL 169
Query: 192 FDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDP 251
D D + G ++ +DC N G A +L ++LGA S+ N P F +P+P
Sbjct: 170 VDVDLKLR----GLKVVVDCANGAAGLVAPRLL-KELGAEVVSI-NCDPDGLFPNINPNP 223
Query: 252 NLIHAKDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAIMVANAGLIPGY 310
DL + H AD G A DGD DR +++ +G FV+ D + ++A L G
Sbjct: 224 GETELLDLAKAVKEHG-ADLGIAFDGDADRLIVVDERGNFVD-GDQILALLAKYLLEKGK 281
Query: 311 ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-S 369
+V ++ +S AL+++A+KL K+ T G K+ + GEES
Sbjct: 282 LPTVVT---TVMSSLALEKIAKKLGGKVVRTKVGDKYIAEKMRENGAVFGGEESGHIIFP 338
Query: 370 NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429
+H R DG+ + L L +LA G+SL +++ + Y S + + E + +
Sbjct: 339 DHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKY---PQSVEINVRVTDEGKAEVLE 395
Query: 430 DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDT 489
L+ V G++V ++ R++ R SGT+
Sbjct: 396 KLLEELRE-----------------------AKKVDTIDGVKVELEDGGRVLVRPSGTEP 432
Query: 490 ENSTLRVYIDNYEPDSSKHLKNTQE 514
+RVY++ + + ++ L
Sbjct: 433 L---IRVYVEAKDEELAEELAEEIA 454
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 522
Score = 148 bits (376), Expect = 3e-36
Identities = 158/558 (28%), Positives = 235/558 (42%), Gaps = 93/558 (16%)
Query: 7 PTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFY----N 62
P+ P Q GTSG R S + S+ E I AI + C + G G +
Sbjct: 14 PSNPAQRVAFGTSGHRG--SSLK-GSFNEAHILAISQAI-CDYRKSQ-GITGPLFLGKDT 68
Query: 63 HIVIQKIIKIA----AANGFARIIIGKGGILSTPAVSHLIRKYKASG------GIILTAS 112
H + + A AANG II G TP +SH I Y GI++T S
Sbjct: 69 HALSEPAFISALEVLAANGVEVIIQQNDGYTPTPVISHAILTYNRGRTEGLADGIVITPS 128
Query: 113 HNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKE-LA 171
HNP +D G KYN GG A T I + + ++ + I + LA
Sbjct: 129 HNPP---EDGGFKYNPPHGGPADTDITRWIEKRAN-----ALLANGLKGVKRIPLEAALA 180
Query: 172 NMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILER---KL 228
+ D + YVA + N+ D DAIRK G R+ +D + + PY + I E+ L
Sbjct: 181 SGYTHRHDFVTPYVADLGNVIDMDAIRKS---GLRLGVDPLGGASVPYWQPIAEKYGLNL 237
Query: 229 GAPTGSVRN---FIPLEDFGGCHPDP-------NLIHAKDLYDRMMMHDSADFGAACDGD 278
V F+ L+ G D L+ KD + D A D D
Sbjct: 238 TVVNPKVDPTFRFMTLDHDGKIRMDCSSPYAMAGLLKLKDKF---------DLAFANDPD 288
Query: 279 GDRSMILGKGI-FVNPSDSLAIMV----ANAGLIPGYATGLVGVARSMPTSAALDRVAEK 333
DR I+ +NP+ L++ + + L A GV +++ +S+ +DRVA
Sbjct: 289 ADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNKSA----GVGKTLVSSSMIDRVAAA 344
Query: 334 LNLKLFETPTGWKFFNNLLENGMITICGEESFGT------GSNHSREKDGIWSILFWLNI 387
L KL+E P G+K+F + L +G + GEES G G+ + +KDGI L I
Sbjct: 345 LGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEI 404
Query: 388 LAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQK 447
LAV G+ + + +G YY+R D P +KA RLK L S ++
Sbjct: 405 LAVTGKDPGQLYQELTERFGEPYYARIDAPATPEQKA---------RLKKL---SP--EQ 450
Query: 448 IKQ---AGDFVYTDSTN--GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYE 502
+ AGD + T GN + G++V N R SG TE+ ++Y +++
Sbjct: 451 VTATELAGDPILAKLTRAPGNGASIGGLKVTTAN-GWFAARPSG--TED-VYKIYAESFL 506
Query: 503 PDSSKHLKNTQEMLSDLV 520
S +HLK Q+ ++V
Sbjct: 507 --SEEHLKKIQKEAQEIV 522
>gnl|CDD|145827 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain I.
Length = 138
Score = 132 bits (335), Expect = 2e-31
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 13 DQKPGTSGLRKKVSVFQQN-SYTENFIQAIFNNV--DCAEKTLVVGGDGRFYNHIVIQKI 69
Q GTSG+R KV V + + QAI + + +VVG D R+ + + + +
Sbjct: 1 RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARAL 60
Query: 70 IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129
AANG I++G +L TPA+S RK A GGI++TASHNP GIK+ S
Sbjct: 61 AAGLAANGVEVILLG---LLPTPALSFATRKLNADGGIMITASHNPPDYN---GIKFYDS 114
Query: 130 SGGSASEQQTEDIFEESKKITSY 152
GG S + E I +K Y
Sbjct: 115 DGGPISPEVEEKIEAIIEKEDFY 137
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 487
Score = 117 bits (296), Expect = 8e-27
Identities = 113/528 (21%), Positives = 194/528 (36%), Gaps = 128/528 (24%)
Query: 17 GTSGLRKKVSV-FQQ-NSYT--------ENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVI 66
GT+GLR K+ + N YT N+++ D + +V+G D R +
Sbjct: 5 GTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGP--DAKNRGVVIGYDSRHNSREFA 62
Query: 67 QKIIKIAAANGF-ARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIK 125
+ + AANG + + TP +S +R A GI++TASHNP + G K
Sbjct: 63 ELTAAVLAANGIKVYLF---DDLRPTPLLSFAVRHLGADAGIMITASHNPK---EYNGYK 116
Query: 126 YNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP--IEN 183
G +I EE IEA ++ + L + I I +
Sbjct: 117 VYWEDGAQIIPPHDAEIAEE---------IEAVLEPLDIKFEEALDSGLIKYIGEEIDDA 167
Query: 184 YV-ALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLE 242
Y+ A+ + + + + +I ++ V G + L+ G N I +E
Sbjct: 168 YLEAVKKLLVNPELNEGK---DLKIVYTPLHGVGGKFVPRALKE-AGFT-----NVIVVE 218
Query: 243 DFGGCHPDPN--------------LIHAKDLYDRMMMHDSADFGAACDGDGDRSMI---- 284
+ PDP+ L A +L + AD A D D DR +
Sbjct: 219 E--QAEPDPDFPTVKFPNPEEPGALDLAIELAKK---VG-ADLILATDPDADRLGVAVKD 272
Query: 285 -LGKGIFVNPSDSLAIMVAN--------AGLIP--GYATGLVGVARSMPTSAALDRVAEK 333
G+ + + + ++A+ G +P + +++ +S L ++A+K
Sbjct: 273 KDGEWRLLT-GNEIGALLADYLLEQRKEKGKLPKNPV------IVKTIVSSELLRKIAKK 325
Query: 334 LNLKLFETPTGWKFF----NNLLENGMITICG-EESFG-TGSNHSREKDGIWSILFWL-- 385
+K+ ET TG+K+ L G + G EES G R+KDGI +
Sbjct: 326 YGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEM 385
Query: 386 -NILAVRGESLLDIVHKHWATYG----RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIG 440
L +G++LLD + + + YG + ++ EK + M+ R
Sbjct: 386 AAYLKAQGKTLLDRLDELYEKYGYYKEKTISITFEGK-EGPEKIKAIMDRLR-------- 436
Query: 441 SSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTD 488
N NV + ++ SR+ R SGT+
Sbjct: 437 -------------------NNPNV-----LTFYLEDGSRVTVRPSGTE 460
>gnl|CDD|145829 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 111
Score = 105 bits (266), Expect = 2e-23
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 293 PSDSLAIMVANA--GLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNN 350
D + ++A L PG V +++ +S ALDRVAE+L +L T G K+
Sbjct: 1 DGDQILALLARYLLELKPG------AVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKE 54
Query: 351 LLENGMITICGEESFGTGS--NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406
+ + GEES G + + KDGI + L L +LA G+SL +++ + Y
Sbjct: 55 KMREEGAVLGGEES-GHIIFLDFATTKDGIIAALLVLELLAETGKSLSELLEELPKRY 111
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 439
Score = 104 bits (262), Expect = 6e-23
Identities = 116/520 (22%), Positives = 200/520 (38%), Gaps = 100/520 (19%)
Query: 17 GTSGLRKKVSVFQQNSYTENFI----QAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKI 72
GTSG+R V T +A+ T+VVG D R ++ +I
Sbjct: 3 GTSGIRGVVGEE----LTPELALKVGKAL--GTYLGGGTVVVGRDTRTSGPMLKNAVIAG 56
Query: 73 AAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSG- 131
+ G +I GI+ TPA+ + +RK G+++TASHNP + GIK G
Sbjct: 57 LLSAG-CDVI--DIGIVPTPALQYAVRKL-GDAGVMITASHNPP---EYNGIKLVNPDGT 109
Query: 132 --GSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALME 189
E++ E+I + V + +G+ I+ Y+ +
Sbjct: 110 EFSREQEEEIEEIIFSER---------FRRVAWDEVGS------VRREDSAIDEYIEAIL 154
Query: 190 NIFDFDAIRKLLSFGFRIDIDCMN---AVTGPYAKEILERKLGAPTGSVRNFIPLEDFGG 246
+ D D + G ++ +DC N ++T PY +L R+LG ++ N P F G
Sbjct: 155 DKVDIDGGK-----GLKVVVDCGNGAGSLTTPY---LL-RELGCKVITL-NANPDGFFPG 204
Query: 247 CHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAIMVANAG 305
P+P + +L ++ AD G A DGD DR++ + KG F++ LA++ A
Sbjct: 205 RPPEPTPENLSEL-MELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALL---AK 260
Query: 306 LIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEES- 364
+ G V S ++ V E+ ++ TP G + GE +
Sbjct: 261 YLLEEGGGKVVTPVD--ASMLVEDVVEEAGGEVIRTPVGDVHVAEEMIENGAVFGGEPNG 318
Query: 365 ---FGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPT 421
F H +DGI + L +LA + L +++ + Y + + P
Sbjct: 319 GWIFPD---HQLCRDGIMTAALLLELLA-EEKPLSELL----DELPK-YPLLREKVECPD 369
Query: 422 EKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRII 481
EK ++ M L + D D G+R+ +++ ++
Sbjct: 370 EKKEEVMEAVEEELSDAD------------EDVDTID----------GVRIEYED-GWVL 406
Query: 482 YRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
R SG TE +R+ E + + K E+L +
Sbjct: 407 IRPSG--TEP-KIRITA---EAKTEERAK---ELLEEGRS 437
>gnl|CDD|36434 KOG1220, KOG1220, KOG1220, Phosphoglucomutase/phosphomannomutase
[Carbohydrate transport and metabolism].
Length = 607
Score = 102 bits (256), Expect = 2e-22
Identities = 118/555 (21%), Positives = 212/555 (38%), Gaps = 71/555 (12%)
Query: 17 GTSGLRKK-VSVFQQ------NSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKI 69
GT+GLR + + F + + + + N +V+G DGR+ + + +
Sbjct: 63 GTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELV 122
Query: 70 IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129
+ NGF + + ++ TP V + A GI++TASHNP +D G K S
Sbjct: 123 AAVFLLNGFKVYLFSE--LVPTPFVPFAVLTLGADAGIMITASHNPK---EDNGYKVYWS 177
Query: 130 SGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP--IENYVAL 187
+G E I +S + + + D + + + L + ++VI P E Y L
Sbjct: 178 NGAQIISPHDEKI-SDSIEANLEPRLSSWDDSL--VKSHPLLHDILAVIIPPYFEVYKEL 234
Query: 188 MENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNF-IPLEDFGG 246
+ G + + V G + K+ LE+ SV P F
Sbjct: 235 LPCFHREANPLS----GLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPT 290
Query: 247 CH-PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRS----MILGKGIFVNPSDSLAIMV 301
P+P A DL + + +SAD A D D DR + G+ N ++ A++
Sbjct: 291 VPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLS 350
Query: 302 A-------NAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNN---- 350
+ + V + S +S +AE ET TG+K+ N
Sbjct: 351 WWVLEEHKGSTPVQD-----VSMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIE 405
Query: 351 LLENGMITICG-EESFG--TGSNHSREKDGIWSILFWLNILA----VRGESLLDIVHKHW 403
L ++G EES G G NH +KDG+ + + + ++ SL +++ +
Sbjct: 406 LEKDGKEVHFAFEESIGYMFGENH-LDKDGVSAAVKFASMACRLRLAGNLSLSEVLEDLY 464
Query: 404 ATYGRNYYSRYD--YLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTN 461
YG Y+S + L I E + + R I IG++ + T +
Sbjct: 465 ERYG--YHSTANSYRLCIDPEVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRDLTTGYD 522
Query: 462 GNVSDK----------QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKN 511
+ D Q + F+N + R SGT+ + +++YI+ P + K+
Sbjct: 523 VSSPDHKAVLPVSTSSQMVTFTFNNGGVVTLRTSGTEPK---IKLYIEACLPPDA---KS 576
Query: 512 TQEMLSDLVEVSQRI 526
+ ++ + +
Sbjct: 577 WERLIKLANLTTSAV 591
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model..
Length = 443
Score = 95.7 bits (239), Expect = 3e-20
Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 52/265 (19%)
Query: 49 EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKG------GILSTPAVSHLIRKYK 102
K +VVG DGR + ++AAA ++ G G++ TP +
Sbjct: 36 AKKVVVGRDGRLSSP-------ELAAA--LIEGLLAAGCDVIDIGLVPTPVLYFATFHLD 86
Query: 103 ASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDI 162
A GG+++TASHNP + G K GG S + + + + E D
Sbjct: 87 ADGGVMITASHNPP---EYNGFKI-VIGGGPLSGEDIQAL---------RERAEKGDF-- 131
Query: 163 NHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKE 222
++ +D + +Y+ + + KL ++ +D N GP A +
Sbjct: 132 ----AAATGRGSVEKVDILPDYIDRLLSDI------KLGKRPLKVVVDAGNGAAGPIAPQ 181
Query: 223 ILERKLGAPTGSVRNFIPLEDFGGCHPDP----NLIHAKDLYDRMMMHDSADFGAACDGD 278
+LE LG + P F HPDP NL +DL + + AD G A DGD
Sbjct: 182 LLEA-LGCEVIPL-FCEPDGTFPNHHPDPTDPENL---EDLIAAVKENG-ADLGIAFDGD 235
Query: 279 GDRSMIL-GKGIFVNPSDSLAIMVA 302
GDR ++ KG + D L + A
Sbjct: 236 GDRLGVVDEKGEIIWG-DRLLALFA 259
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
is located C-terminal to a mannose-1-phosphate
guanyltransferase domain in a protein of unknown
function that is found in both prokaryotes and
eukaryotes. This domain belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 445
Score = 90.4 bits (225), Expect = 1e-18
Identities = 84/355 (23%), Positives = 124/355 (34%), Gaps = 81/355 (22%)
Query: 19 SGLRKKVSVFQQNSYTENFIQAI--FNNVDCAEKTLVVGGDGR----FYNHIVIQKIIKI 72
SG+R V ++ A + +VVG DGR IVI
Sbjct: 5 SGIRGIVGEGLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVI------ 58
Query: 73 AAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPA--------GATQDFGI 124
A +I GI TP V L+R+ +ASGGII+TASHNP G G
Sbjct: 59 GALLACGCDVI-DLGIAPTPTVQVLVRQSQASGGIIITASHNPPQWNGLKFIGPD---GE 114
Query: 125 KYNTSSGG---SASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPI 181
G S +E + + +A I+ + + + +D I
Sbjct: 115 FLTPDEGEEVLSCAEAGSAQKAGYDQLGEVTFSEDAIAEHIDKV-------LALVDVDVI 167
Query: 182 ENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL 241
IR+ F++ +D +N G +LE KLG I L
Sbjct: 168 --------------KIRER---NFKVAVDSVNGAGGLLIPRLLE-KLGC------EVIVL 203
Query: 242 EDFGGCHPDPNLIH-----AKDLYD--RMMMHDSADFGAACDGDGDRSMILG-KGIFVNP 293
C P H ++L + AD G A D D DR ++ G +
Sbjct: 204 ----NCEPTGLFPHTPEPLPENLTQLCAAVKESGADVGFAVDPDADRLALVDEDGRPIGE 259
Query: 294 SDSLAIMVANAGLIPGYATGLVG----VARSMPTSAALDRVAEKLNLKLFETPTG 344
+LA+ V Y G V ++ TS AL+ +A K + +F + G
Sbjct: 260 EYTLALAVD-------YVLKYGGRKGPVVVNLSTSRALEDIARKHGVPVFRSAVG 307
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM)
that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in
the biosynthetic pathway of UDP-N-acetylglucosamine, an
essential precursor to components of the cell envelope.
In order to be active, GlmM must be phosphorylated,
which can occur via autophosphorylation or by the
Ser/Thr kinase StkP. GlmM functions in a classical
ping-pong bi-bi mechanism with
glucosamine-1,6-diphosphate as an intermediate. Other
members of the alpha-D-phosphohexomutase superfamily
include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 434
Score = 87.9 bits (219), Expect = 6e-18
Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 65/329 (19%)
Query: 87 GILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSAS---EQQTEDIF 143
G++ TPAV++L RK +A G++++ASHNP +D GIK+ +S G E++ E +
Sbjct: 72 GVIPTPAVAYLTRKLRADAGVVISASHNPF---EDNGIKFFSSDGYKLPDEVEEEIEALI 128
Query: 144 EESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSF 203
++ IG + D Y+ +++ F D LLS
Sbjct: 129 DK---------ELELPPTGEKIGR------VYRIDDARGRYIEFLKSTFPKD----LLS- 168
Query: 204 GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLI-------HA 256
G +I +DC N A E+ R+LGA I + PD I H
Sbjct: 169 GLKIVLDCANGAAYKVAPEVF-RELGA------EVIVI----NNAPDGLNINVNCGSTHP 217
Query: 257 KDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAI----MVANAGLIPGYA 311
+ L + ++ + AD G A DGD DR + + KG V+ LAI + L
Sbjct: 218 ESL-QKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGN-- 274
Query: 312 TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKF-FNNLLENGMITICGEESFGTG-- 368
+VG M ++ L++ ++L +KL T G ++ +L++G + GE+S G
Sbjct: 275 -TVVGT--VM-SNLGLEKALKELGIKLVRTKVGDRYVLEEMLKHG-ANLGGEQS---GHI 326
Query: 369 --SNHSREKDGIWSILFWLNILAVRGESL 395
+HS DG+ + L L I+ G+SL
Sbjct: 327 IFLDHSTTGDGLLTALQLLAIMKRSGKSL 355
>gnl|CDD|145828 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain II.
Length = 103
Score = 75.8 bits (187), Expect = 3e-14
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 182 ENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL 241
+ Y+ + + FD +A++K G ++ D ++ V G E+L+R LGA N P
Sbjct: 1 DAYIDRLASAFDLEALKKR---GLKVVYDPLHGVGGEILPELLKR-LGAEVVEE-NCEPD 55
Query: 242 EDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMI 284
DF P+P A +L ++ AD G A DGD DR +
Sbjct: 56 GDFPTKAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGV 98
>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
guanyltransferase (MPG1 transferase), also known as
GDP-mannose pyrophosphorylase, is a bifunctional enzyme
with both phosphomannose isomerase (PMI) activity and
GDP-mannose phosphorylase (GMP) activity. The protein
contains an N-terminal NTP transferase domain, an
L-beta-H domain, and a C-terminal PGM-like domain that
belongs to the alpha-D-phosphohexomutase superfamily.
This subfamily is limited to bacteria and archaea. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Members
of this group appear to lack conserved residues
necessary for metal binding and catalytic activity.
Other members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 441
Score = 53.0 bits (128), Expect = 2e-07
Identities = 76/349 (21%), Positives = 132/349 (37%), Gaps = 59/349 (16%)
Query: 73 AAANGFARIIIGKGGILST------------PAVSHLIRKYKASGGIILTASHNPAGATQ 120
A+ R +I G+LST P + IR ASGGI + S + +
Sbjct: 45 RASRMLKRALIS--GLLSTGVNVRDLGALPLPVARYAIRFLGASGGIHVRTSPDDPDKVE 102
Query: 121 DFGIKYNTSSG---GSASEQQTEDIF--EESKKITSYQIIEANDVDINHIGTKELANMTI 175
I++ S G A E++ E+ F E+ ++ +I DI
Sbjct: 103 ---IEFFDSRGLNISRAMERKIENAFFREDFRRAHVDEI-----GDITEP---------- 144
Query: 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235
D +E Y+ + D ++K G ++ ID V G +L R LG V
Sbjct: 145 --PDFVEYYIRGLLRALDTSGLKK---SGLKVVIDYAYGVAGIVLPGLLSR-LGC--DVV 196
Query: 236 RNFIPLEDFGGCHPDPNLIH-AKDLYDRMMMHDSADFGAACDGDGDR-SMILGKGIFVNP 293
L++ + D R++ ADFG D +G+R ++ G ++
Sbjct: 197 ILNARLDE--DAPRTDTERQRSLDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISD 254
Query: 294 SDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFF-NNLL 352
D L +V+ L+ + V + + ++++AE+ ++ T T + L
Sbjct: 255 -DLLTALVS---LLVLKSEPGGTVVVPVTAPSVIEQLAERYGGRVIRTKTSPQALMEAAL 310
Query: 353 ENGMITICGEESFG--TGSNHSREKDGIWSILFWLNILAVRGESLLDIV 399
EN ++ G+ F D I +++ L +LA SL IV
Sbjct: 311 ENVVLAGDGDGGFIFPEFHPGF---DAIAALVKILEMLARTNISLSQIV 356
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 459
Score = 41.4 bits (98), Expect = 6e-04
Identities = 73/300 (24%), Positives = 108/300 (36%), Gaps = 53/300 (17%)
Query: 17 GTSGLRKKVSVFQQN---SYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIA 73
GTSGLR V+ +YT F+Q + + T+ VG D R + +
Sbjct: 3 GTSGLRGLVTDLTDEVCYAYTRAFLQHLESKF--PGDTVAVGRDLRPSSPRIAAACAAAL 60
Query: 74 AANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDF-GIKYNTSSGG 132
GF + G + TPA++ K A I++T SH PA D G+K+ G
Sbjct: 61 RDAGFRVVDC---GAVPTPALALYAMKRGA-PAIMVTGSHIPA----DRNGLKFYRPDG- 111
Query: 133 SASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIF 192
E +K I A V++ + D + Y+A + F
Sbjct: 112 -----------EITK--ADEAAILAALVELPEALFDPAGALLPPDTDAADAYIARYTDFF 158
Query: 193 DFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGA---PTGSVRNFIPL--EDFGGC 247
A L G RI + ++V ILE LGA P G FIP+ E
Sbjct: 159 GAGA----LK-GLRIGVYQHSSVGRDLLVRILE-ALGAEVVPLGRSDTFIPVDTE----A 208
Query: 248 HPDPNLIHAKDLYDRMMMHDSADFGA--ACDGDGDRSMILG-KGIFVNPSDSLAIMVANA 304
+ A A + DGDGDR ++ G ++ D L ++ A
Sbjct: 209 VRPEDRALAAAWA------AEHGLDAIVSTDGDGDRPLVADETGEWL-RGDILGLLTARF 261
Score = 29.1 bits (66), Expect = 3.5
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 418 GIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNH 477
PTEK+Q + RL A F ++ G+R+ F N
Sbjct: 378 NFPTEKSQALIA----RLSA--DPEAR------AAFFFALGGEVASIDTTDGLRMTFANG 425
Query: 478 SRIIYRISGTDTENSTLRVYI 498
+ R SG E LR Y+
Sbjct: 426 DIVHLRPSGNAPE---LRCYV 443
>gnl|CDD|39814 KOG4614, KOG4614, KOG4614, Inner membrane protein required for
assembly of the F0 sector of ATP synthase
[Posttranslational modification, protein turnover,
chaperones].
Length = 287
Score = 37.4 bits (86), Expect = 0.011
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 146 SKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGF 205
S+ + S +E+ K+L +S ID +A+++ F+F+ +F F
Sbjct: 184 SQNMISSWFLESF------GNRKDLQLFEVSFIDKWLLGLAVLQKPFNFENSVLQWAFYF 237
Query: 206 RIDIDCMNAVTG 217
R +I N +TG
Sbjct: 238 RKEIKVNNLLTG 249
>gnl|CDD|144122 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase,
C-terminal domain.
Length = 71
Score = 36.5 bits (85), Expect = 0.021
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 467 KQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
+ ++++F++ R++ R SGT+ LRVY+ E D L+ +++L++
Sbjct: 23 AEALKILFEDGRRLVVRPSGTEPV---LRVYV---EADDEAELEEIAAEVAELLK 71
>gnl|CDD|38950 KOG3746, KOG3746, KOG3746, Uncharacterized conserved protein
[Function unknown].
Length = 553
Score = 30.8 bits (69), Expect = 0.91
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 399 VHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLI---GSSFIGQKIKQAGDFV 455
+H T+G + R PT + QD+ D Y L N + + +K A
Sbjct: 388 IHFEDRTFGYIDFRRRGEKDPPTFRVQDYGWDHGYSLMNRLYPTLGQLLDEKFDHAYTLT 447
Query: 456 YTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYID 499
Y + N D +R N+ ++ I D + + +D
Sbjct: 448 YNTAAMHNEVDTSALRRAIWNYIHCLFGIRYDDYDYGEINQLLD 491
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
(phosphoacetylglucosamine mutase) and AGM1
(N-acetylglucosamine-phosphate mutase), is an essential
enzyme found in eukaryotes that reversibly catalyzes the
conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
biosynthetic pathway. UDP-GlcNAc is an essential
metabolite that serves as the biosynthetic precursor of
many glycoproteins and mucopolysaccharides. AGM1 is a
member of the alpha-D-phosphohexomutase superfamily,
which catalyzes the intramolecular phosphoryl transfer
of sugar substrates. The alpha-D-phosphohexomutases have
four domains with a centrally located active site formed
by four loops, one from each domain. All four domains
are included in this alignment model..
Length = 513
Score = 30.3 bits (69), Expect = 1.6
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Query: 106 GIILTASHNPAGATQDFGIK 125
G+++TASHNP +D G+K
Sbjct: 38 GVMITASHNPV---EDNGVK 54
>gnl|CDD|145670 pfam02634, FdhD-NarQ, FdhD/NarQ family. Nitrate assimilation
protein, NarQ, and FdhD are required for formate
dehydrogenase activity.
Length = 235
Score = 30.2 bits (69), Expect = 1.7
Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 55/180 (30%)
Query: 204 GFRIDIDCMNA-VTGPYAKEILERKLGAPTGSV-----RNFIPLEDFGGCHPDPNL-IHA 256
+D D + V LER+L TG+ F+ + + A
Sbjct: 47 SIEVDEDEGSVEVRTRAGALKLERRLLKRTGTSGCGCGVEFLEDALLRAIPLLSDARLDA 106
Query: 257 KDLYDRM--MMHDSADF-------GAA-CDGDG---------------DRSMILGKGIF- 290
+ ++ M + + AA D DG D+ ++G +
Sbjct: 107 ETIFALMEALNEHQELYRETGGVHAAALFDADGEILAFREDVGRHNALDK--LIGAALLA 164
Query: 291 -VNPSDSLAI--------MV---ANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKL 338
++ SD + + MV A AG IP V V+RS PTS A++ +AE+L + L
Sbjct: 165 GIDLSDKILLVTGRLSSEMVQKAARAG-IP------VLVSRSAPTSLAVE-LAEELGITL 216
>gnl|CDD|38080 KOG2869, KOG2869, KOG2869, Meiotic cell division protein
Pelota/DOM34 [Translation, ribosomal structure and
biogenesis].
Length = 379
Score = 29.1 bits (65), Expect = 3.2
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 27/130 (20%)
Query: 2 LCTIVPTVPYQDQKPGTSGLRKK---VSVFQQ--NSYTENFIQAIFNNVDCAE-KTLVVG 55
+C + + K S RK+ VS ++ + EN +QAI +V+ K +VV
Sbjct: 149 ICLVTKSSTILRAKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVA 208
Query: 56 GDG----RFYNHIVIQ--------------KIIKIAAANGFARIIIGKGGILSTPAVSHL 97
G +F +++ Q K + A++G+ + +L PAV+
Sbjct: 209 SPGFVKDQFMDYLFQQAVKLDLKLILENKSKFPLVHASSGYKHSL---NEVLKDPAVASK 265
Query: 98 IRKYKASGGI 107
++ KA+ +
Sbjct: 266 LQDTKAAKEV 275
>gnl|CDD|36327 KOG1111, KOG1111, KOG1111, N-acetylglucosaminyltransferase complex,
subunit PIG-A/SPT14, required for phosphatidylinositol
biosynthesis/Sulfolipid synthase [Cell
wall/membrane/envelope biogenesis, Posttranslational
modification, protein turnover, chaperones, Lipid
transport and metabolism].
Length = 426
Score = 28.7 bits (64), Expect = 4.7
Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 251 PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDS----LAIMVANAGL 306
P I +++ +++ + D D R +++ IF+N S + + I+ A +
Sbjct: 236 PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCG 295
Query: 307 IPGYATGLVGVARSMPTSAAL------DRVAEKLNLKLFETPTGWKFFNNLLEN 354
+P +T + G+ +P D + + + + T F++ ++
Sbjct: 296 LPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKK 349
>gnl|CDD|34993 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer
membrane].
Length = 542
Score = 28.5 bits (63), Expect = 5.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 56 GDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV--SHLIRKYKASGGIILTAS 112
GDG N IQ I A+ G +++ G LS P S+ + + A G +L +S
Sbjct: 92 GDGATDNTAAIQAAIDACASAGGGTVLLPAGTYLSGPLFLKSN-VTLHLAEGATLLASS 149
>gnl|CDD|33313 COG3510, CmcI, Cephalosporin hydroxylase [Defense mechanisms].
Length = 237
Score = 28.4 bits (63), Expect = 5.9
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 402 HWATYGRNYYSRYDYLGIPTEKA-QDFMN 429
H YG + Y ++GIP K+ D N
Sbjct: 32 HKWYYGNDVTYNYTWMGIPCIKSPSDMWN 60
>gnl|CDD|35676 KOG0455, KOG0455, KOG0455, Homoserine dehydrogenase [Amino acid
transport and metabolism].
Length = 364
Score = 27.7 bits (61), Expect = 8.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 11 YQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVG 55
D KPGT V ++ YTE + N +D A K ++
Sbjct: 187 LSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTILA 231
>gnl|CDD|30186 cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase.
The Argininosuccinate synthase is a urea cycle enzyme
that catalyzes the penultimate step in arginine
biosynthesis: the ATP-dependent ligation of citrulline
to aspartate to form argininosuccinate, AMP and
pyrophosphate . In humans, a defect in the AS gene
causes citrullinemia, a genetic disease characterized by
severe vomiting spells and mental retardation. AS is a
homotetrameric enzyme of chains of about 400 amino-acid
residues. An arginine seems to be important for the
enzyme's catalytic mechanism. The sequences of AS from
various prokaryotes, archaebacteria and eukaryotes show
significant similarity.
Length = 385
Score = 27.8 bits (62), Expect = 8.2
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 49 EKTLVVGGDGRFYNHI-VIQKIIKIAAANGFARI------IIG-KG-GILSTPAVSHLIR 99
EK + V +G + + +I ++ +IA +G RI +IG K + P + LI+
Sbjct: 220 EKGVPVALNGEKLDPVELILELNEIAGKHGVGRIDIVENRVIGIKSREVYEAPGATILIK 279
Query: 100 KYKASGGIILT 110
++ + L
Sbjct: 280 AHRDLESLTLD 290
>gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 27.8 bits (62), Expect = 8.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 314 LVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMIT 358
LVG R + A++ VA+K FE G + LE G++
Sbjct: 366 LVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLI 410
>gnl|CDD|145176 pfam01872, RibD_C, RibD C-terminal domain. The function of this
domain is not known, but it is thought to be involved in
riboflavin biosynthesis. This domain is found in the C
terminus of RibD/RibG, in combination with pfam00383, as
well as in isolation in some archaebacterial proteins.
This family appears to be related to pfam00186.
Length = 196
Score = 27.7 bits (62), Expect = 8.5
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLV 520
G +++Q RVV D+ R+ + + TL + + + + LK + L +L+
Sbjct: 64 KGRAAERQPPRVVVDSTLRVPLDARVLNDDAPTLVATTEPADKEKVEKLKVLRVDLKELL 123
Query: 521 E 521
Sbjct: 124 R 124
>gnl|CDD|37748 KOG2537, KOG2537, KOG2537, Phosphoglucomutase/phosphomannomutase
[Carbohydrate transport and metabolism].
Length = 539
Score = 27.6 bits (61), Expect = 9.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 106 GIILTASHNPAGATQDFGIKYNTSSGGSASEQ 137
G+++TASHNP +D G+K SG +
Sbjct: 62 GVMITASHNP---VEDNGVKIVDPSGEMLAAS 90
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.267 0.0884 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,664,892
Number of extensions: 370254
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 41
Length of query: 542
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 443
Effective length of database: 4,124,446
Effective search space: 1827129578
Effective search space used: 1827129578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)