RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62] (542 letters) >1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A Length = 572 Score = 406 bits (1044), Expect = e-114 Identities = 249/570 (43%), Positives = 345/570 (60%), Gaps = 41/570 (7%) Query: 4 TIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAE----KTLVVGGDGR 59 + T PY QKPGTSGLRKKVS Q +Y ENF+Q+IFN + E L VGGDGR Sbjct: 9 RVQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGR 68 Query: 60 FYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKY-----KASGGIILTASHN 114 ++N I II++A AN + + +G+ G++STPA SH IRK GGIILTASHN Sbjct: 69 YFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHN 128 Query: 115 PAGAT-QDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIE---ANDVDINHIGTK-- 168 P G DFGIK+N +G A E T+ I+ + KI Y ++ ++++ IG Sbjct: 129 PGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKF 188 Query: 169 -----ELANMTISVIDPIENYVALMENIFDFDAIRKLLSF-GFRIDIDCMNAVTGPYAKE 222 E ++ + V+D +++Y LM+ +FDFD ++ L S F D M+ V GPYAK Sbjct: 189 EGTRLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKH 248 Query: 223 ILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDS------ADFGAACD 276 I LG S+ N P EDFGG HPDPNL +A DL + + +H FGAACD Sbjct: 249 IFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACD 308 Query: 277 GDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNL 336 GD DR+MILG+ FV PSDSLA++ ANA LI GL+G ARSMPTS ALD+VA K + Sbjct: 309 GDADRNMILGRQFFVTPSDSLAVIAANANLIFKN--GLLGAARSMPTSGALDKVAAKNGI 366 Query: 337 KLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGE--- 393 KLFETPTGWKFF NL++ G+I +CGEESFGTGSNH REKDGIW++L WL ILA + + Sbjct: 367 KLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTD 426 Query: 394 ---SLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQ 450 ++ +IV ++W +GRNYYSRYDY + + A M + + + ++ + Sbjct: 427 HFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQL----KQGNK 482 Query: 451 AGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLK 510 A + Y D + +VS QG+R VF + SRII+R+SGT + +T+R+Y + +E +H Sbjct: 483 ADIYDYVDPVDQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHE- 541 Query: 511 NTQEMLSDLVEVSQRISCLRHYIGHTNPSI 540 T L++++++ IS + + G P++ Sbjct: 542 -TATALANIIKLGLEISDIAQFTGRNEPTV 570 >3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A* Length = 561 Score = 346 bits (887), Expect = 1e-95 Identities = 280/560 (50%), Positives = 378/560 (67%), Gaps = 21/560 (3%) Query: 1 MLCTIVPTVPYQDQKPGTSGLRKKVSVFQQN-SYTENFIQAIFN---NVDCAEKTLVVGG 56 + V T Y DQKPGTSGLRK+V VFQ + +Y ENFIQ+I + E TLVVGG Sbjct: 1 VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGG 60 Query: 57 DGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPA 116 DGRFY IQ I++IAAANG R++IG+ GILSTPAVS +IRK KA GGIILTASHNP Sbjct: 61 DGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPG 120 Query: 117 GATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKE------L 170 G DFGIK+N S+GG A E T+ IF+ SK I Y I VD+ +G ++ Sbjct: 121 GPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKF 180 Query: 171 ANMTISVIDPIENYVALMENIFDFDAIRKLLS--FGFRIDIDCMNAVTGPYAKEILERKL 228 T+ ++D +E Y ++ NIFDF+A+++LLS +I ID M+ V GPY K+IL +L Sbjct: 181 KPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEEL 240 Query: 229 GAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK- 287 GAP S N +PLEDFGG HPDPNL +A DL + M + DFGAA DGDGDR+MILGK Sbjct: 241 GAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGE-HDFGAAFDGDGDRNMILGKH 299 Query: 288 GIFVNPSDSLAIMVANAGLIPGYA-TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWK 346 G FVNPSDS+A++ AN IP + TG+ G ARSMPTS ALDRVA + L+ETPTGWK Sbjct: 300 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 359 Query: 347 FFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406 FF NL++ +++CGEESFGTGS+H REKDG+W++L WL+ILA R +S+ DI+ HW + Sbjct: 360 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKF 419 Query: 407 GRNYYSRYDYLGIPTEKAQDFMNDFRYRL--KNLIGSSFIGQ----KIKQAGDFVYTDST 460 GRN+++RYDY + E A M D + ++ +G F +++A +F Y D Sbjct: 420 GRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPV 479 Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLV 520 +G+VS QG+R++F + SRII+R+SGT + +T+R+YID+YE D++K ++ Q ML+ L+ Sbjct: 480 DGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLI 539 Query: 521 EVSQRISCLRHYIGHTNPSI 540 ++ ++S L+ G T P++ Sbjct: 540 SIALKVSQLQERTGRTAPTV 559 >2fuv_A Phosphoglucomutase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, isomerase; HET: MSE; 2.00A {Salmonella typhimurium LT2} Length = 549 Score = 187 bits (474), Expect = 7e-48 Identities = 123/538 (22%), Positives = 217/538 (40%), Gaps = 49/538 (9%) Query: 7 PTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAI------FNNVDCAEKTLVVGGDGRF 60 K GTSG R ++S+ E I AI + VG D Sbjct: 36 AGNAEHAVKFGTSGHRGSAG---RHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHA 92 Query: 61 YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYK-----ASGGIILTASHNP 115 + ++++ AANG I+ G TPAVS+ I + + GI++T SHNP Sbjct: 93 LSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNP 152 Query: 116 AGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTI 175 +D GIKYN +GG A T+ + + + + + + + ++ +A+ + Sbjct: 153 P---EDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAA----MASGHV 205 Query: 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235 +D ++ +V + +I D AI+K G + +D + Y K I E T Sbjct: 206 KAVDLVQPFVEGLADIVDMAAIQK---AGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVN 262 Query: 236 RNFIPLEDFGGCHPD----PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFV 291 F D + + + + D D A D D DR I+ + Sbjct: 263 DQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLM 322 Query: 292 NPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFF-NN 350 NP+ LA+ + V V +++ +SA +DRV L KL E P G+K+F + Sbjct: 323 NPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDG 382 Query: 351 LLENGMITICGEESFGT-----GSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWAT 405 L + E + + G+ S +KDGI L I AV G++ + ++ A Sbjct: 383 LFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAAR 442 Query: 406 YGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVS 465 +G Y+R +KA ++ + + S+ G I + GN + Sbjct: 443 FGAPSYNRLQASATSAQKAA--LSKLSPEMVS--ASTLAGDPITA-----RLTAAPGNGA 493 Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHL--KNTQEMLSDLVE 521 G++V+ DN R SGT+ ++Y +++ + + K E++S++++ Sbjct: 494 SIGGLKVMTDN-GWFAARPSGTE---DAYKIYCESFLGEEHRKQIEKEAVEIVSEVLK 547 >2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics, NPPSFA; 2.52A {Thermus thermophilus HB8} Length = 524 Score = 186 bits (473), Expect = 9e-48 Identities = 132/536 (24%), Positives = 206/536 (38%), Gaps = 53/536 (9%) Query: 7 PTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAI------FNNVDCAEKTLVVGGDGRF 60 P P + + GTSG R + ++TE + AI A L + D Sbjct: 17 PQNPLEGVRFGTSGHRGSS---LKATFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHA 73 Query: 61 YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKA-----SGGIILTASHNP 115 + + + AA+G + G TP VS I ++ A + G++LT SHNP Sbjct: 74 LSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSHNP 133 Query: 116 AGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTI 175 +D G KYN +GG A+ + T I E + + + + + A Sbjct: 134 P---EDGGFKYNPPTGGPANARITRAIEERANALLQEGLKGVKRLPLRE------ALARA 184 Query: 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235 D YV + D +AIR G RI +D + + + + E Sbjct: 185 KPFDYAGLYVEKVAEAVDLEAIRA---SGLRIGVDPLGGASLRVWERLAESHGLPLEVVN 241 Query: 236 RNFIPLEDFGGCH----PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFV 291 P F + + + + D D D D DR I+ + Sbjct: 242 PTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLALKDRFDLAIGNDPDADRHGIVTPRGLM 301 Query: 292 NPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNL 351 NP+ LA + + + V ++ TSA LDRVA+ L +++ETP G+K F Sbjct: 302 NPNHYLAAALHHLYTTRSWPGA--KVGKTAVTSALLDRVAQALGREVYETPVGFKHFVAG 359 Query: 352 LENGMITICGEES------FGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWAT 405 L G + GEES G S +KDGI L ++A RG++ + Sbjct: 360 LLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKRGQAPDALYEALAEK 419 Query: 406 YGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVS 465 GR YY+R D P KA R K + S+ G+ + Q D GN Sbjct: 420 LGRPYYARKDLPVSPEAKA----RLARLSAKEVHPSTLAGEPVLQ-----VLDRATGNGE 470 Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 GI+VV N + R SGT+ +VY +++ ++ HL+ E + L+ Sbjct: 471 PLGGIKVVAAN-AWFAVRPSGTE---DVAKVYAESFLGEA--HLERVLEEATALLH 520 >1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme-ligand complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3bkq_X* 3c04_A* 2fkm_X* Length = 463 Score = 153 bits (388), Expect = 8e-38 Identities = 79/475 (16%), Positives = 158/475 (33%), Gaps = 71/475 (14%) Query: 49 EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGII 108 E + VG DGR +++++I+ G +G ++ TP + + + G++ Sbjct: 48 EPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVG---MVPTPVLYYAANVLEGKSGVM 104 Query: 109 LTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTK 168 LT SHNP + + + E I + + +G+ Sbjct: 105 LTGSHNPPDYNGFKIVVAGETLANEQIQALRERIEKND--------------LASGVGSV 150 Query: 169 ELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKL 228 E ++ I + +A+ + ++ +DC N V G A +++E L Sbjct: 151 EQVDILPRYFKQIRDDIAMAK--------------PMKVVVDCGNGVAGVIAPQLIEA-L 195 Query: 229 GAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKG 288 G + +F HPDP + ++AD G A DGDGDR ++ Sbjct: 196 GCSVIPL-YCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNT 254 Query: 289 IFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFF 348 + D L ++ A + + + + L + + TG Sbjct: 255 GTIIYPDRLLMLFAKDVV---SRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLI 311 Query: 349 NNLLENGMITICGEES--FGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406 ++ + GE S DGI+S L IL+ + + Sbjct: 312 KKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSA----F 367 Query: 407 GRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSD 466 + + + + + + Q+ Q G+ GN++ Sbjct: 368 PSDISTPEINITVTEDSKFAIIEAL--------------QRDAQWGE--------GNITT 405 Query: 467 KQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 G+RV + + R S T L + E D+ + L+ + + + ++ Sbjct: 406 LDGVRVDYPK-GWGLVRASNTT---PVLVLRF---EADTEEELERIKTVFRNQLK 453 >3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magnesium, metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp} Length = 443 Score = 132 bits (332), Expect = 2e-31 Identities = 93/512 (18%), Positives = 175/512 (34%), Gaps = 85/512 (16%) Query: 17 GTSGLRKKVSVFQQNSYTENFIQAI------FNNVDCAEKTLVVGGDGRFYNHIVIQKII 70 GT G+R +V+ ++ T F Q + N K ++VG D R + ++ Sbjct: 6 GTDGIRGEVA---NSTITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALV 62 Query: 71 KIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSS 130 A G + +G ++ TP V+ + K++A+ G ++TASHN D GIK +S+ Sbjct: 63 SGLNAAGIDVLDLG---VVPTPVVAFMTVKHRAAAGFVITASHNKF---TDNGIKLFSSN 116 Query: 131 GGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMEN 190 G + E++ + YQ + I+ Y+ + + Sbjct: 117 GFKLDDALEEEVEDMIDGDFIYQPQFKFGSYKIL-------------ANAIDEYIESIYS 163 Query: 191 IFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPD 250 F K ++ +DC + + +L++ N D + Sbjct: 164 RFAKFVNYKG-----KVVVDCAHGAASHNFEALLDKFGINYVSIASN----PDGLNINVG 214 Query: 251 PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGY 310 ++ + AD G + DGD DR +I+ + D + ++A I G Sbjct: 215 CGATCVSNIKKAVKEQK-ADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDICG- 272 Query: 311 ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGT-GS 369 G G+ + T+ + + + + G ++ L I GE S Sbjct: 273 --GTNGIVGTQMTNMSYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIGGESSGHVINL 330 Query: 370 NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429 N DG+++ + L I + + + + Sbjct: 331 NFGTTGDGLFTAIQLLAIFSQADKPVSEFK--------------------------LQGE 364 Query: 430 DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDT 489 + L N+ + + ++ Q SD + N R++ R SGT+ Sbjct: 365 LMQQTLINVPLTKKVAREDLQK-----------VASDVNDVEKRLGNRGRVLLRPSGTE- 412 Query: 490 ENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 LRV + E D N E L + V+ Sbjct: 413 --PVLRVMV---EADDKSLATNEAEYLVEKVK 439 >1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus} Length = 464 Score = 121 bits (302), Expect = 6e-28 Identities = 105/507 (20%), Positives = 174/507 (34%), Gaps = 60/507 (11%) Query: 17 GTSGLRKKVSVFQQNSYTENFIQAIFNNV-DCAEKTLVVGGDGRFYNHIVIQKIIKIAAA 75 GT G R ++ + +A ++ + +VVG D RF + + A Sbjct: 15 GTEGFRGVIAREFTFATLHRLAEAYGRHLLERGGGLVVVGHDTRFLADAFARALSGHLAG 74 Query: 76 NGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSAS 135 G +++ G + TP +S +R KA+GG +LTASHNP Sbjct: 75 MGLKVVLLK--GPVPTPLLSFAVRHLKAAGGAMLTASHNPPQYLGVKFKDATGGPIAQEE 132 Query: 136 EQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFD 195 + E + E + + ++ A E + Sbjct: 133 AKAIEALVPEEARA------------------------LEGAYETLDLREAYFEALKAHL 168 Query: 196 AIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIH 255 ++ L F + D M + K L P F G +P+P + Sbjct: 169 DLKALSGFSGVLYHDSMGGAGAGFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKN 228 Query: 256 AKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLV 315 + F A DGD DR ++ G + +A G+ V Sbjct: 229 LGVTLAVLGPETPPSFAVATDGDADRVGVVLPGGVFFNPHQVLTTLALYRFRKGHRGRAV 288 Query: 316 GVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSRE 374 DR+ E+L + TP G+K+ G I GEES G G H E Sbjct: 289 KNFAVTWLL---DRLGERLGFGVTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPE 345 Query: 375 KDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYR 434 +DGI + L L +A G+ L + + A G + YD L +P + D Sbjct: 346 RDGILTSLLLLESVAATGKDLAEQFKEVEALTGLTHA--YDRLDLPLKAPLDLTP----- 398 Query: 435 LKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTL 494 + AG T V G++ +++ + +++R SGT+ + Sbjct: 399 ---------FREPRPLAG------LTPKGVDTLDGVKWLYEE-AWVLFRASGTE---PVV 439 Query: 495 RVYIDNYEPDSSKHLKNTQEMLSDLVE 521 R+Y+ E S + ++ E LVE Sbjct: 440 RIYV---EAQSPELVRALLEEARKLVE 463 >2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A* Length = 544 Score = 116 bits (290), Expect = 1e-26 Identities = 82/505 (16%), Positives = 150/505 (29%), Gaps = 103/505 (20%) Query: 103 ASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQT---------------------ED 141 + G+++TASHNP +D G+K G Sbjct: 57 KTVGVMITASHNPP---EDNGVKVVDPLGSMLESSWEKYATDLANASPSPSNDSEGEKNS 113 Query: 142 IFEESKKITSYQIIE---------------------------------ANDVDINHIGTK 168 + E K + S I+ D T Sbjct: 114 LVEVIKNLVSDLKIDLSIPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTP 173 Query: 169 ELANMTISVIDPIEN-------YVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAK 221 EL +T ++ DP Y L ++ + I + + I ID N V P + Sbjct: 174 ELHYVTRTLNDPDFGKPTEDGYYSKLAKSFQEIYTICESNNEKIDITIDAANGVGAPKIQ 233 Query: 222 EILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRM--MMHDSADFGAACDGDG 279 E+LE+ L + + D + K + + A+ DGD Sbjct: 234 ELLEKYLHKEISFTVVNGDYKQPNLLNFDCGADYVKTNQKLPKNVKPVNNKLYASFDGDA 293 Query: 280 DRSMILGKGIF----VNPSDSLAIMVANAGLIPGYATGLVG-------VARSMPTSAALD 328 DR + + + D L+ + A V + ++ Sbjct: 294 DRLICYYQNNDNKFKLLDGDKLSTLFALFLQQLFKQIDPTKISLNIGVVQTAYANGSSTK 353 Query: 329 RVAEKLNLKLFETPTGWKFFNNLLENGMITICGEES-----------FGTGSNHSREKDG 377 V + L + + TPTG K ++ EN I + E + ++ D Sbjct: 354 YVEDVLKIPVRCTPTGVKHLHHEAENFDIGVYFEANGHGTVIFNPEAEKKIFDYKPNNDN 413 Query: 378 IWSILFWLNILA-VRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLK 436 + L + + +++ D + A +Y + + D +L Sbjct: 414 EAKAIKVLQNFSQLINQTVGDAISDLLAVLIVVHYL-----KLSPSDWDNEYTDLPNKLV 468 Query: 437 NLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRV 496 +I K G + + + N R R SGT+ +RV Sbjct: 469 KVIVPDR--SIFKTTNAERTLVEPKGMQDEIDKLVAQYPN-GRSFVRASGTE---DAVRV 522 Query: 497 YIDNYEPDSSKHLKNTQEMLSDLVE 521 Y E D+ +++ + +S+LV+ Sbjct: 523 YA---EADTQNNVEELSKAVSELVK 544 >1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal complex, isomerase; 2.00A {Pyrococcus horikoshii} Length = 455 Score = 114 bits (286), Expect = 4e-26 Identities = 108/512 (21%), Positives = 187/512 (36%), Gaps = 73/512 (14%) Query: 17 GTSGLRKKVSVFQQNSYTENFIQAI-------FNNVDCAEKTLVVGGDGRFYNHIVIQKI 69 GT G+R T F I + +VVG D R ++ + + Sbjct: 6 GTFGVRGIA----NEKITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEAL 61 Query: 70 IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129 I + G I +G I TPAV + + A GG ++TASHNP ++ N Sbjct: 62 ISGLLSVGCDVIDVG---IAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLEPNGM 118 Query: 130 SGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALME 189 E E++F D + E+ + D I+ Y+ ++ Sbjct: 119 GLKKEREAIVEELFF--------------KEDFDRAKWYEI--GEVRREDIIKPYIEAIK 162 Query: 190 NIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHP 249 + D +AI+K F +D N +L N P F +P Sbjct: 163 SKVDVEAIKKRKPFVV---VDTSNGAGSLTLPYLLRE--LGCKVITVNAQPDGYFPARNP 217 Query: 250 DPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPG 309 +PN + K+ + + + DFG A DGD DR++ + + D +VA+A L Sbjct: 218 EPNEENLKEFMEIVKALGA-DFGVAQDGDADRAVFIDENGRFIQGDKTFALVADAVLKEK 276 Query: 310 YATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGS 369 + ++ TS LD +A+K K+ T G L TI GEE+ G Sbjct: 277 GGG---LLVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEENGGV-- 331 Query: 370 NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429 I+ A+ +++I K + Y I T++ + Sbjct: 332 --------IFPEHVLGRDGAMTVAKVVEIFAKSGKKFSELIDELPKYYQIKTKR---HVE 380 Query: 430 DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDT 489 R+ + N + + A + YT V G +++F++ ++ R SGT+ Sbjct: 381 GDRHAIVNKV--------AEMARERGYT------VDTTDGAKIIFED-GWVLVRASGTE- 424 Query: 490 ENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 +R++ E S + + + +L+E Sbjct: 425 --PIIRIFS---EAKSKEKAQEYLNLGIELLE 451 >2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii} Length = 455 Score = 93.0 bits (229), Expect = 2e-19 Identities = 79/508 (15%), Positives = 160/508 (31%), Gaps = 63/508 (12%) Query: 17 GTSGLRKKVSVFQQNSYTENFIQAI---FNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIA 73 GT G+R V T + + ++VG D R ++++ + Sbjct: 6 GTDGVRGIV----NKELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGL 61 Query: 74 AANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGS 133 + G G + TPA+ + ++ GG+++TASHNPA + + Sbjct: 62 LSVGVEVYDGG---MAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRR 118 Query: 134 ASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFD 193 E + ED+F N I L I YV + + D Sbjct: 119 EKENEIEDLFFTE--------------RFNTIEWSSLTTEVKREDRVISTYVNGILSHVD 164 Query: 194 FDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNL 253 + I+K +++ ID N+V + N PL P + Sbjct: 165 IEKIKKK---NYKVLIDPANSVGALSTPLVARALGCKIYTINGNLDPLFSARQPEPTFDS 221 Query: 254 IHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATG 313 + ++ D G A DGD DR++ + V D +++ + Sbjct: 222 LKE---TAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAI 278 Query: 314 LVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSR 373 V +S + +++ + + + + + G E G Sbjct: 279 KKIVTAVSSSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENA--LAGFEENG----GFM 332 Query: 374 EKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRY 433 + ++ ++ + A + +D L + ++ + Sbjct: 333 YPPHQYVRDGAMSF---------ALMLELLANENVSSAELFDRLP------KYYLVKTKV 377 Query: 434 RLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENST 493 LK + I +KI + +++ G++++ + + R SGT+ Sbjct: 378 DLKPGLMVEEIYKKILEV-----YSTSSVKAITIDGVKIIGKD-FWFLVRKSGTE---PI 428 Query: 494 LRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 +R+ E N L +VE Sbjct: 429 IRIMA---EAKDENVANNLVNELKKIVE 453 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 49.6 bits (118), Expect = 2e-06 Identities = 79/446 (17%), Positives = 134/446 (30%), Gaps = 204/446 (45%) Query: 14 QKPGTSGLRKKVSVFQQNSYTENF-IQAIF----NNVDCAE------KTLVVGGDGRFYN 62 K S L + V N + AIF N D E +T Y+ Sbjct: 138 DKKSNSALFRAVG-------EGNAQLVAIFGGQGNTDDYFEELRDLYQT---------YH 181 Query: 63 HIVIQKIIKIAAA--NGFARI------IIGKG-GIL-------STPAVSHLIRKYKA--S 104 +V +IK +A + R + +G IL +TP +L+ S Sbjct: 182 VLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL---SIPIS 237 Query: 105 GGII-LTA-SH----------NP-------AGAT---QDFGIKYNTSSGGSASEQQTEDI 142 +I + +H P GAT Q G+ T+ + + + + Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLV--TAVAIAET--DSWES 291 Query: 143 FEESKKITSYQIIEANDVDINHIGTKEL---ANMTI--SVI-DPIEN------------- 183 F S + + I + IG + N ++ S++ D +EN Sbjct: 292 FFVSVR----KAITV----LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343 Query: 184 --YVALMENIFDFDAIRKLLSFGFRIDIDCMNA-----VTGP----YAKEILERKLGAPT 232 + + + + L G +++I +N V+GP Y + RK AP+ Sbjct: 344 LTQEQVQDYV---NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400 Query: 233 GSVRNFIP-------------------------------LEDFGGCHPDPNL-IHAKDL- 259 G ++ IP +D N+ +AKD+ Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV----KNNVSFNAKDIQ 456 Query: 260 ---YD-------------------RMMMHD----------SA----DFG---AAC----- 275 YD ++ A DFG A+ Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516 Query: 276 ----DGDGDRSMILGKGIFVNPSDSL 297 DG G R +I+ + +NP D Sbjct: 517 HRNKDGTGVR-VIVAGTLDINPDDDY 541 Score = 49.2 bits (117), Expect = 2e-06 Identities = 96/551 (17%), Positives = 162/551 (29%), Gaps = 240/551 (43%) Query: 109 LTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTK 168 LT SH G+ + + T+S AS+ Q + F + + E + Sbjct: 9 LTLSH---GSLE-HVLLVPTASFFIASQLQ--EQFNKI-------LPEPTE--------- 46 Query: 169 ELA--NMTISVIDPIE------NYVA---LMENIFDFDAIRKLL------SFGFRIDIDC 211 A + + P E YV+ + FD + L + DI Sbjct: 47 GFAADDEPTT---PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-- 101 Query: 212 MNAV----TGPYAKEILERKLGAPTGSVRNFIPLEDFGGCH----PDPNLIHAKDLYDRM 263 +A+ +++ K ++N+ P Sbjct: 102 -HALAAKLLQENDTTLVKTKE-----LIKNY-----ITARIMAKRPFDK----------- 139 Query: 264 MMHDSADFGAACDGDGDRSMIL--GKGI----FVNPSDSLAIMVANAGLIPGYAT--GLV 315 +SA F A +G+ + + + G+G F + L + Y T LV Sbjct: 140 -KSNSALFRAVGEGNA-QLVAIFGGQGNTDDYF----EELRDL---------YQTYHVLV 184 Query: 316 GVARSMPTSAALDRVAEKLNLKLFETPTGW-KFFN---NL---LEN-------------- 354 G + AE L+ +L T K F N+ LEN Sbjct: 185 GD--------LIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235 Query: 355 ------GMITIC-------------GE--ESF-G-TGSNHSREKDGI-----------W- 379 G+I + GE G TG HS+ G+ W Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG--HSQ---GLVTAVAIAETDSWE 290 Query: 380 ----------SILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429 ++LF+ + VR ++ Y S +P +D Sbjct: 291 SFFVSVRKAITVLFF---IGVRC-------YE---AYPN--TS------LPPSILED--- 326 Query: 430 DFRYRLKNLIGS-----SFIGQKIKQAGDFVYTDSTNGNV-SDKQ-------GIR--VV- 473 L+N G S +Q D+V + TN ++ + KQ G + VV Sbjct: 327 ----SLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNGAKNLVVS 380 Query: 474 --------FDNHSRIIYRISGTDTEN---STLRVYIDN-YEPDS----SKHLKN-TQEML 516 + R SG D S ++ N + P + S L + + Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440 Query: 517 SDLVEVSQRIS 527 DLV+ + + Sbjct: 441 KDLVKNNVSFN 451 Score = 47.6 bits (113), Expect = 6e-06 Identities = 102/646 (15%), Positives = 176/646 (27%), Gaps = 281/646 (43%) Query: 3 CTI-VPTVPYQDQKPGTSGLRKKVSVFQQN--SYTENFIQAIFNNVDCAEKTLVVGGDGR 59 + VPT + S L+++ F + TE F E T G+ Sbjct: 18 HVLLVPTASF----FIASQLQEQ---FNKILPEPTEGFAADD-------EPTTPAELVGK 63 Query: 60 FYNHIV----------IQKIIKIAAANGFARIIIGKGGI------------LSTPAVSHL 97 F ++ +++ F + I + L Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLN-LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122 Query: 98 IRKY---KASGGIILTASHNPA----GATQDFGIKYNTSSGGSASEQQ--TEDIFEESKK 148 I+ Y + N A + + GG Q T+D FEE + Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-V-AIFGG-----QGNTDDYFEELRD 175 Query: 149 I-TSYQ-IIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFR 206 + +Y ++ D+ I L E I K+ + G Sbjct: 176 LYQTYHVLVG----DL------------IKFSAET-----LSELIRTTLDAEKVFTQGLN 214 Query: 207 I-----------DIDCM--NAVTGP---------YA----------KEILERKLGAPTG- 233 I D D + ++ P Y E+ GA TG Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGH 273 Query: 234 -----------SVRNFIPLEDFG-------------G--CH---PDPNLIHAKDLYDRMM 264 ++ E F G C+ P+ +L + + Sbjct: 274 SQGLVTAVAIAETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS-------I 323 Query: 265 MHDSADFGAACDGDGDRS-MILGKGI-------FVN------PSDS-LAIMVANAG---L 306 + DS + + +G S M+ + +VN P+ + I + N + Sbjct: 324 LEDSLE-----NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378 Query: 307 IPGYATGLVGVA---RSMPTSAALD--RV--AEKLNLKL-FET---PTGWKFFNNLLENG 355 + G L G+ R + LD R+ +E+ KL F P F ++LL Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHLLVPA 435 Query: 356 M-----------ITICGEE----SFGT--GSNHSREKDGIWSILFWLNILAVRGESLLD- 397 ++ ++ + T GS+ R G +I E ++D Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSG--------SIS----ERIVDC 482 Query: 398 IVHK--HWATYGRNYYSRYDYLGIPTEKAQDF----MNDFRYRLKNLIG---SSFIGQKI 448 I+ W E F + DF G +S +G Sbjct: 483 IIRLPVKW------------------ETTTQFKATHILDF--------GPGGASGLG--- 513 Query: 449 KQAGDFVYTDSTNGNVSDKQGIRVV----FDNHSRIIYRISGTDTE 490 T+ N D G+RV+ D D + Sbjct: 514 ---------VLTHRNK-DGTGVRVIVAGTLD---------INPDDD 540 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 37.3 bits (85), Expect = 0.009 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 23/51 (45%) Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHL--KNTQE 514 +KQ ++ ++ ++L++Y D DS+ L K T E Sbjct: 18 EKQALK-----------KL------QASLKLYAD----DSAPALAIKATME 47 >1jmm_A Antigen I/II, protein I/II V-region, PAC protein; immune system, membrane protein; 2.40A {Streptococcus mutans} SCOP: b.30.6.1 Length = 377 Score = 33.5 bits (76), Expect = 0.11 Identities = 20/157 (12%), Positives = 45/157 (28%), Gaps = 11/157 (7%) Query: 352 LENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY---GR 408 L + S + + + IL ++ E D+ + Sbjct: 58 LTTDGKFLKASAVDDAFSKSTSKAKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDK 117 Query: 409 NYYSRYDYLGIPTEKAQDFMN-----DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGN 463 +S + + Y NL S + G+KI + + YT Sbjct: 118 AGWSTTVSNNSQVKWGSVLLERGQSATATY--TNLQNSYYNGKKISKI-VYKYTVDPKSK 174 Query: 464 VSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDN 500 ++ +F + + ++ + T ++I N Sbjct: 175 FQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKN 211 >3n4f_A Mandelate racemase/muconate lactonizing protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MSE; 1.88A {Geobacillus SP} Length = 392 Score = 29.7 bits (66), Expect = 1.9 Identities = 26/176 (14%), Positives = 45/176 (25%), Gaps = 17/176 (9%) Query: 194 FDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNL 253 I ++ +I ID NA KE+L + ++ L Sbjct: 191 VRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWL 250 Query: 254 IHAKD--LYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIM----VANAGLI 307 L S G ++ I+ + + + Sbjct: 251 GQRGQNVLIADGEGLASPHLIEWAT-RGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSA 309 Query: 308 PGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWK---FFNNL-LENGMITI 359 P G+ S SAA+ N + E + +ENG I + Sbjct: 310 PHCYGNAYGIYASGHLSAAVR------NFEFVEYDDITIEGMDVSGYRIENGEIHV 359 >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 Score = 29.3 bits (65), Expect = 2.0 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 12/86 (13%) Query: 231 PTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADF---GAACDGDGDRSMILGK 287 PTG V + + L D +++D A GAA +RS++ Sbjct: 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS- 233 Query: 288 GIFVNPSDSLAIMVANAGLIPGYATG 313 A A G G+ G Sbjct: 234 --------GFAKTYAMTGWRVGFLAG 251 >1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A Length = 271 Score = 29.2 bits (64), Expect = 2.3 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 19/232 (8%) Query: 82 IIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTED 141 + + P ++ K G + AS N F + S + Sbjct: 14 FLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDE--ISFVAENGAL 71 Query: 142 IFEESKKITSYQIIEANDVDINHIGTKELANMTISVID--------PIENYVALMENIFD 193 ++E K++ ++ + K+ ++ E +VALM + Sbjct: 72 VYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYH 131 Query: 194 FDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGC-HPDPN 252 K + + ++++ A G ++ F P + Sbjct: 132 RLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLH 191 Query: 253 LIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANA 304 + + + A D D M+ + + NA Sbjct: 192 KANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMAR--------YSFAMGNA 235 >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Length = 550 Score = 29.2 bits (65), Expect = 2.3 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 4/96 (4%) Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236 V+ + V +E++ +AIR+ + ++ PY + E K SV Sbjct: 148 VVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVA 207 Query: 237 NFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFG 272 G PD ++ + + A F Sbjct: 208 TLR----GVGIQPDILVLRSARPVPEEVRRKVALFT 239 >2bpa_1 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} SCOP: b.121.5.1 PDB: 1al0_F* 1cd3_F 1m06_F* 1m0f_F 1rb8_F* Length = 426 Score = 29.1 bits (65), Expect = 2.6 Identities = 5/57 (8%), Positives = 14/57 (24%), Gaps = 1/57 (1%) Query: 410 YYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSD 466 Y +LG ++ I +++ + N + + Sbjct: 102 YIDHAAFLGTINPDTNKI-PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDAR 157 >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Length = 582 Score = 28.6 bits (63), Expect = 4.1 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 3/64 (4%) Query: 403 WATYGRNYY-SRYDYL-GIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDST 460 YG + R+ L + + + Y + Q I + +Y ++ Sbjct: 18 VLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIV-SDGVIYVTAS 76 Query: 461 NGNV 464 + Sbjct: 77 YSRL 80 >2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Score = 27.9 bits (61), Expect = 5.3 Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 4/119 (3%) Query: 203 FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDR 262 ++ Y KE LE+ + + A+++ Sbjct: 219 VTKMLEDIGEKEHAEAYLKEKLEKGERLMG----FGHRVYKTKDPRAEALRQKAEEVAGN 274 Query: 263 MMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSM 321 D A A G+ ++ N A ++ T +R + Sbjct: 275 DRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMV 333 >3iyn_O Hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5} Length = 227 Score = 27.9 bits (61), Expect = 5.8 Identities = 11/39 (28%), Positives = 15/39 (38%) Query: 115 PAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQ 153 AGA QD+ + N S G + I +I Q Sbjct: 20 AAGAAQDYSTRINYMSAGPHMISRVNGIRAHRNRILLEQ 58 >2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A* Length = 294 Score = 27.9 bits (62), Expect = 5.8 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%) Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236 + + V +E++ +A R+ R + ++ P E+K SVR Sbjct: 165 CVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVR 224 Query: 237 NFIPLEDFGGCHPD 250 L G PD Sbjct: 225 ELRGL----GLSPD 234 >1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 Score = 27.9 bits (61), Expect = 6.2 Identities = 18/93 (19%), Positives = 29/93 (31%) Query: 34 TENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPA 93 NF+ D + + G G FY+ V ++I+ G G+GG A Sbjct: 48 VANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFA 107 Query: 94 VSHLIRKYKASGGIILTASHNPAGATQDFGIKY 126 ++ A+ P F I Sbjct: 108 DEFHPELQFDKPYLLAMANAGPGTNGSQFFITV 140 >1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 Score = 27.5 bits (60), Expect = 7.0 Identities = 8/74 (10%), Positives = 16/74 (21%) Query: 248 HPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLI 307 Y + A + KGI +N ++ + Sbjct: 261 KTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIP 320 Query: 308 PGYATGLVGVARSM 321 T + + R Sbjct: 321 IELYTTIFAMGRIA 334 >1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1s9v_A 2nna_A 1jk8_A* Length = 197 Score = 27.7 bits (61), Expect = 7.9 Identities = 10/22 (45%), Positives = 11/22 (50%) Query: 397 DIVHKHWATYGRNYYSRYDYLG 418 DIV H A+ G N Y Y G Sbjct: 2 DIVADHVASCGVNLYQFYGPSG 23 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0409 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,861,252 Number of extensions: 239387 Number of successful extensions: 805 Number of sequences better than 10.0: 1 Number of HSP's gapped: 762 Number of HSP's successfully gapped: 46 Length of query: 542 Length of database: 5,693,230 Length adjustment: 97 Effective length of query: 445 Effective length of database: 3,341,562 Effective search space: 1486995090 Effective search space used: 1486995090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)