RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus
Liberibacter asiaticus str. psy62]
         (542 letters)



>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
           isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
           c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
          Length = 572

 Score =  406 bits (1044), Expect = e-114
 Identities = 249/570 (43%), Positives = 345/570 (60%), Gaps = 41/570 (7%)

Query: 4   TIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAE----KTLVVGGDGR 59
            +  T PY  QKPGTSGLRKKVS   Q +Y ENF+Q+IFN +   E      L VGGDGR
Sbjct: 9   RVQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGR 68

Query: 60  FYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKY-----KASGGIILTASHN 114
           ++N   I  II++A AN  + + +G+ G++STPA SH IRK         GGIILTASHN
Sbjct: 69  YFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHN 128

Query: 115 PAGAT-QDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIE---ANDVDINHIGTK-- 168
           P G    DFGIK+N  +G  A E  T+ I+  + KI  Y  ++      ++++ IG    
Sbjct: 129 PGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKF 188

Query: 169 -----ELANMTISVIDPIENYVALMENIFDFDAIRKLLSF-GFRIDIDCMNAVTGPYAKE 222
                E ++  + V+D +++Y  LM+ +FDFD ++ L S   F    D M+ V GPYAK 
Sbjct: 189 EGTRLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKH 248

Query: 223 ILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDS------ADFGAACD 276
           I    LG    S+ N  P EDFGG HPDPNL +A DL + + +H          FGAACD
Sbjct: 249 IFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACD 308

Query: 277 GDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNL 336
           GD DR+MILG+  FV PSDSLA++ ANA LI     GL+G ARSMPTS ALD+VA K  +
Sbjct: 309 GDADRNMILGRQFFVTPSDSLAVIAANANLIFKN--GLLGAARSMPTSGALDKVAAKNGI 366

Query: 337 KLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGE--- 393
           KLFETPTGWKFF NL++ G+I +CGEESFGTGSNH REKDGIW++L WL ILA + +   
Sbjct: 367 KLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTD 426

Query: 394 ---SLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQ 450
              ++ +IV ++W  +GRNYYSRYDY  + +  A   M   + + +         ++  +
Sbjct: 427 HFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQL----KQGNK 482

Query: 451 AGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLK 510
           A  + Y D  + +VS  QG+R VF + SRII+R+SGT +  +T+R+Y + +E    +H  
Sbjct: 483 ADIYDYVDPVDQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHE- 541

Query: 511 NTQEMLSDLVEVSQRISCLRHYIGHTNPSI 540
            T   L++++++   IS +  + G   P++
Sbjct: 542 -TATALANIIKLGLEISDIAQFTGRNEPTV 570


>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase; HET: SEP;
           2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1
           c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A*
           1c47_A*
          Length = 561

 Score =  346 bits (887), Expect = 1e-95
 Identities = 280/560 (50%), Positives = 378/560 (67%), Gaps = 21/560 (3%)

Query: 1   MLCTIVPTVPYQDQKPGTSGLRKKVSVFQQN-SYTENFIQAIFN---NVDCAEKTLVVGG 56
           +    V T  Y DQKPGTSGLRK+V VFQ + +Y ENFIQ+I +        E TLVVGG
Sbjct: 1   VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGG 60

Query: 57  DGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPA 116
           DGRFY    IQ I++IAAANG  R++IG+ GILSTPAVS +IRK KA GGIILTASHNP 
Sbjct: 61  DGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPG 120

Query: 117 GATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKE------L 170
           G   DFGIK+N S+GG A E  T+ IF+ SK I  Y I     VD+  +G ++       
Sbjct: 121 GPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKF 180

Query: 171 ANMTISVIDPIENYVALMENIFDFDAIRKLLS--FGFRIDIDCMNAVTGPYAKEILERKL 228
              T+ ++D +E Y  ++ NIFDF+A+++LLS     +I ID M+ V GPY K+IL  +L
Sbjct: 181 KPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEEL 240

Query: 229 GAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK- 287
           GAP  S  N +PLEDFGG HPDPNL +A DL + M   +  DFGAA DGDGDR+MILGK 
Sbjct: 241 GAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGE-HDFGAAFDGDGDRNMILGKH 299

Query: 288 GIFVNPSDSLAIMVANAGLIPGYA-TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWK 346
           G FVNPSDS+A++ AN   IP +  TG+ G ARSMPTS ALDRVA    + L+ETPTGWK
Sbjct: 300 GFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWK 359

Query: 347 FFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406
           FF NL++   +++CGEESFGTGS+H REKDG+W++L WL+ILA R +S+ DI+  HW  +
Sbjct: 360 FFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKF 419

Query: 407 GRNYYSRYDYLGIPTEKAQDFMNDFRYRL--KNLIGSSFIGQ----KIKQAGDFVYTDST 460
           GRN+++RYDY  +  E A   M D    +  ++ +G  F        +++A +F Y D  
Sbjct: 420 GRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPV 479

Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLV 520
           +G+VS  QG+R++F + SRII+R+SGT +  +T+R+YID+YE D++K  ++ Q ML+ L+
Sbjct: 480 DGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLI 539

Query: 521 EVSQRISCLRHYIGHTNPSI 540
            ++ ++S L+   G T P++
Sbjct: 540 SIALKVSQLQERTGRTAPTV 559


>2fuv_A Phosphoglucomutase; structural genomics, PSI, protein structure
           initiative, midwest center for structural genomics,
           MCSG, isomerase; HET: MSE; 2.00A {Salmonella typhimurium
           LT2}
          Length = 549

 Score =  187 bits (474), Expect = 7e-48
 Identities = 123/538 (22%), Positives = 217/538 (40%), Gaps = 49/538 (9%)

Query: 7   PTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAI------FNNVDCAEKTLVVGGDGRF 60
                   K GTSG R       ++S+ E  I AI          +       VG D   
Sbjct: 36  AGNAEHAVKFGTSGHRGSAG---RHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHA 92

Query: 61  YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYK-----ASGGIILTASHNP 115
            +      ++++ AANG   I+    G   TPAVS+ I  +       + GI++T SHNP
Sbjct: 93  LSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNP 152

Query: 116 AGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTI 175
               +D GIKYN  +GG A    T+ + + +  + +  +     + ++      +A+  +
Sbjct: 153 P---EDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAA----MASGHV 205

Query: 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235
             +D ++ +V  + +I D  AI+K    G  + +D +      Y K I E      T   
Sbjct: 206 KAVDLVQPFVEGLADIVDMAAIQK---AGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVN 262

Query: 236 RNFIPLEDFGGCHPD----PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFV 291
                   F     D     +      +   + + D  D   A D D DR  I+     +
Sbjct: 263 DQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLM 322

Query: 292 NPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFF-NN 350
           NP+  LA+ +             V V +++ +SA +DRV   L  KL E P G+K+F + 
Sbjct: 323 NPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDG 382

Query: 351 LLENGMITICGEESFGT-----GSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWAT 405
           L +        E +  +     G+  S +KDGI   L    I AV G++  +  ++  A 
Sbjct: 383 LFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAAR 442

Query: 406 YGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVS 465
           +G   Y+R        +KA   ++     + +   S+  G  I          +  GN +
Sbjct: 443 FGAPSYNRLQASATSAQKAA--LSKLSPEMVS--ASTLAGDPITA-----RLTAAPGNGA 493

Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHL--KNTQEMLSDLVE 521
              G++V+ DN      R SGT+      ++Y +++  +  +    K   E++S++++
Sbjct: 494 SIGGLKVMTDN-GWFAARPSGTE---DAYKIYCESFLGEEHRKQIEKEAVEIVSEVLK 547


>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
           structural genomics, NPPSFA; 2.52A {Thermus thermophilus
           HB8}
          Length = 524

 Score =  186 bits (473), Expect = 9e-48
 Identities = 132/536 (24%), Positives = 206/536 (38%), Gaps = 53/536 (9%)

Query: 7   PTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAI------FNNVDCAEKTLVVGGDGRF 60
           P  P +  + GTSG R       + ++TE  + AI            A   L +  D   
Sbjct: 17  PQNPLEGVRFGTSGHRGSS---LKATFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHA 73

Query: 61  YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKA-----SGGIILTASHNP 115
            +       + + AA+G    +   G    TP VS  I ++ A     + G++LT SHNP
Sbjct: 74  LSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSHNP 133

Query: 116 AGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTI 175
               +D G KYN  +GG A+ + T  I E +  +    +     + +        A    
Sbjct: 134 P---EDGGFKYNPPTGGPANARITRAIEERANALLQEGLKGVKRLPLRE------ALARA 184

Query: 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235
              D    YV  +    D +AIR     G RI +D +   +    + + E          
Sbjct: 185 KPFDYAGLYVEKVAEAVDLEAIRA---SGLRIGVDPLGGASLRVWERLAESHGLPLEVVN 241

Query: 236 RNFIPLEDFGGCH----PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFV 291
               P   F           +      +   + + D  D     D D DR  I+     +
Sbjct: 242 PTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLALKDRFDLAIGNDPDADRHGIVTPRGLM 301

Query: 292 NPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNL 351
           NP+  LA  + +      +      V ++  TSA LDRVA+ L  +++ETP G+K F   
Sbjct: 302 NPNHYLAAALHHLYTTRSWPGA--KVGKTAVTSALLDRVAQALGREVYETPVGFKHFVAG 359

Query: 352 LENGMITICGEES------FGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWAT 405
           L  G +   GEES         G   S +KDGI   L    ++A RG++   +       
Sbjct: 360 LLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKRGQAPDALYEALAEK 419

Query: 406 YGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVS 465
            GR YY+R D    P  KA       R   K +  S+  G+ + Q       D   GN  
Sbjct: 420 LGRPYYARKDLPVSPEAKA----RLARLSAKEVHPSTLAGEPVLQ-----VLDRATGNGE 470

Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
              GI+VV  N +    R SGT+      +VY +++  ++  HL+   E  + L+ 
Sbjct: 471 PLGGIKVVAAN-AWFAVRPSGTE---DVAKVYAESFLGEA--HLERVLEEATALLH 520


>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
           phosphoserine, enzyme-ligand complex, enzyme-metal
           complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas
           aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
           PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X*
           2h4l_X* 2fkf_A* 3bkq_X* 3c04_A* 2fkm_X*
          Length = 463

 Score =  153 bits (388), Expect = 8e-38
 Identities = 79/475 (16%), Positives = 158/475 (33%), Gaps = 71/475 (14%)

Query: 49  EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGII 108
           E  + VG DGR     +++++I+     G     +G   ++ TP + +     +   G++
Sbjct: 48  EPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVG---MVPTPVLYYAANVLEGKSGVM 104

Query: 109 LTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTK 168
           LT SHNP        +    +      +   E I +                  + +G+ 
Sbjct: 105 LTGSHNPPDYNGFKIVVAGETLANEQIQALRERIEKND--------------LASGVGSV 150

Query: 169 ELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKL 228
           E  ++       I + +A+ +                ++ +DC N V G  A +++E  L
Sbjct: 151 EQVDILPRYFKQIRDDIAMAK--------------PMKVVVDCGNGVAGVIAPQLIEA-L 195

Query: 229 GAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKG 288
           G     +       +F   HPDP            +  ++AD G A DGDGDR  ++   
Sbjct: 196 GCSVIPL-YCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNT 254

Query: 289 IFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFF 348
             +   D L ++ A   +          +   +  +  L  +      +     TG    
Sbjct: 255 GTIIYPDRLLMLFAKDVV---SRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLI 311

Query: 349 NNLLENGMITICGEES--FGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406
              ++     + GE S             DGI+S    L IL+        +       +
Sbjct: 312 KKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSA----F 367

Query: 407 GRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSD 466
             +  +    + +  +     +                 Q+  Q G+        GN++ 
Sbjct: 368 PSDISTPEINITVTEDSKFAIIEAL--------------QRDAQWGE--------GNITT 405

Query: 467 KQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
             G+RV +      + R S T      L +     E D+ + L+  + +  + ++
Sbjct: 406 LDGVRVDYPK-GWGLVRASNTT---PVLVLRF---EADTEEELERIKTVFRNQLK 453


>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magnesium,
           metal-binding, phosphoprotein, structural genomics; HET:
           SEP; 2.30A {Francisella tularensis subsp}
          Length = 443

 Score =  132 bits (332), Expect = 2e-31
 Identities = 93/512 (18%), Positives = 175/512 (34%), Gaps = 85/512 (16%)

Query: 17  GTSGLRKKVSVFQQNSYTENFIQAI------FNNVDCAEKTLVVGGDGRFYNHIVIQKII 70
           GT G+R +V+    ++ T  F Q +        N     K ++VG D R     +   ++
Sbjct: 6   GTDGIRGEVA---NSTITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALV 62

Query: 71  KIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSS 130
               A G   + +G   ++ TP V+ +  K++A+ G ++TASHN      D GIK  +S+
Sbjct: 63  SGLNAAGIDVLDLG---VVPTPVVAFMTVKHRAAAGFVITASHNKF---TDNGIKLFSSN 116

Query: 131 GGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMEN 190
           G    +   E++ +       YQ                         + I+ Y+  + +
Sbjct: 117 GFKLDDALEEEVEDMIDGDFIYQPQFKFGSYKIL-------------ANAIDEYIESIYS 163

Query: 191 IFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPD 250
            F      K      ++ +DC +       + +L++          N     D    +  
Sbjct: 164 RFAKFVNYKG-----KVVVDCAHGAASHNFEALLDKFGINYVSIASN----PDGLNINVG 214

Query: 251 PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGY 310
                  ++   +     AD G + DGD DR +I+ +       D +  ++A    I G 
Sbjct: 215 CGATCVSNIKKAVKEQK-ADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDICG- 272

Query: 311 ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGT-GS 369
             G  G+  +  T+ + +       +    +  G ++    L      I GE S      
Sbjct: 273 --GTNGIVGTQMTNMSYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIGGESSGHVINL 330

Query: 370 NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429
           N     DG+++ +  L I +   + + +                                
Sbjct: 331 NFGTTGDGLFTAIQLLAIFSQADKPVSEFK--------------------------LQGE 364

Query: 430 DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDT 489
             +  L N+  +  + ++  Q              SD   +     N  R++ R SGT+ 
Sbjct: 365 LMQQTLINVPLTKKVAREDLQK-----------VASDVNDVEKRLGNRGRVLLRPSGTE- 412

Query: 490 ENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
               LRV +   E D      N  E L + V+
Sbjct: 413 --PVLRVMV---EADDKSLATNEAEYLVEKVK 439


>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
           of alginate, structural genomics; 1.70A {Thermus
           thermophilus}
          Length = 464

 Score =  121 bits (302), Expect = 6e-28
 Identities = 105/507 (20%), Positives = 174/507 (34%), Gaps = 60/507 (11%)

Query: 17  GTSGLRKKVSVFQQNSYTENFIQAIFNNV-DCAEKTLVVGGDGRFYNHIVIQKIIKIAAA 75
           GT G R  ++     +      +A   ++ +     +VVG D RF      + +    A 
Sbjct: 15  GTEGFRGVIAREFTFATLHRLAEAYGRHLLERGGGLVVVGHDTRFLADAFARALSGHLAG 74

Query: 76  NGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSAS 135
            G   +++   G + TP +S  +R  KA+GG +LTASHNP                    
Sbjct: 75  MGLKVVLLK--GPVPTPLLSFAVRHLKAAGGAMLTASHNPPQYLGVKFKDATGGPIAQEE 132

Query: 136 EQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFD 195
            +  E +  E  +                              + ++   A  E +    
Sbjct: 133 AKAIEALVPEEARA------------------------LEGAYETLDLREAYFEALKAHL 168

Query: 196 AIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIH 255
            ++ L  F   +  D M      + K  L               P   F G +P+P   +
Sbjct: 169 DLKALSGFSGVLYHDSMGGAGAGFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKN 228

Query: 256 AKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLV 315
                  +       F  A DGD DR  ++  G        +   +A      G+    V
Sbjct: 229 LGVTLAVLGPETPPSFAVATDGDADRVGVVLPGGVFFNPHQVLTTLALYRFRKGHRGRAV 288

Query: 316 GVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSRE 374
                       DR+ E+L   +  TP G+K+       G   I GEES G G   H  E
Sbjct: 289 KNFAVTWLL---DRLGERLGFGVTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPE 345

Query: 375 KDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYR 434
           +DGI + L  L  +A  G+ L +   +  A  G  +   YD L +P +   D        
Sbjct: 346 RDGILTSLLLLESVAATGKDLAEQFKEVEALTGLTHA--YDRLDLPLKAPLDLTP----- 398

Query: 435 LKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTL 494
                      +    AG       T   V    G++ +++  + +++R SGT+     +
Sbjct: 399 ---------FREPRPLAG------LTPKGVDTLDGVKWLYEE-AWVLFRASGTE---PVV 439

Query: 495 RVYIDNYEPDSSKHLKNTQEMLSDLVE 521
           R+Y+   E  S + ++   E    LVE
Sbjct: 440 RIYV---EAQSPELVRALLEEARKLVE 463


>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
           albicans} PDB: 2dkc_A* 2dkd_A*
          Length = 544

 Score =  116 bits (290), Expect = 1e-26
 Identities = 82/505 (16%), Positives = 150/505 (29%), Gaps = 103/505 (20%)

Query: 103 ASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQT---------------------ED 141
            + G+++TASHNP    +D G+K     G                               
Sbjct: 57  KTVGVMITASHNPP---EDNGVKVVDPLGSMLESSWEKYATDLANASPSPSNDSEGEKNS 113

Query: 142 IFEESKKITSYQIIE---------------------------------ANDVDINHIGTK 168
           + E  K + S   I+                                     D     T 
Sbjct: 114 LVEVIKNLVSDLKIDLSIPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTP 173

Query: 169 ELANMTISVIDPIEN-------YVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAK 221
           EL  +T ++ DP          Y  L ++  +   I +  +    I ID  N V  P  +
Sbjct: 174 ELHYVTRTLNDPDFGKPTEDGYYSKLAKSFQEIYTICESNNEKIDITIDAANGVGAPKIQ 233

Query: 222 EILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRM--MMHDSADFGAACDGDG 279
           E+LE+ L             +     + D    + K        +   +    A+ DGD 
Sbjct: 234 ELLEKYLHKEISFTVVNGDYKQPNLLNFDCGADYVKTNQKLPKNVKPVNNKLYASFDGDA 293

Query: 280 DRSMILGKGIF----VNPSDSLAIMVANAGLIPGYATGLVG-------VARSMPTSAALD 328
           DR +   +       +   D L+ + A                     V  +    ++  
Sbjct: 294 DRLICYYQNNDNKFKLLDGDKLSTLFALFLQQLFKQIDPTKISLNIGVVQTAYANGSSTK 353

Query: 329 RVAEKLNLKLFETPTGWKFFNNLLENGMITICGEES-----------FGTGSNHSREKDG 377
            V + L + +  TPTG K  ++  EN  I +  E +                ++    D 
Sbjct: 354 YVEDVLKIPVRCTPTGVKHLHHEAENFDIGVYFEANGHGTVIFNPEAEKKIFDYKPNNDN 413

Query: 378 IWSILFWLNILA-VRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLK 436
               +  L   + +  +++ D +    A     +Y       +      +   D   +L 
Sbjct: 414 EAKAIKVLQNFSQLINQTVGDAISDLLAVLIVVHYL-----KLSPSDWDNEYTDLPNKLV 468

Query: 437 NLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRV 496
            +I         K            G   +   +   + N  R   R SGT+     +RV
Sbjct: 469 KVIVPDR--SIFKTTNAERTLVEPKGMQDEIDKLVAQYPN-GRSFVRASGTE---DAVRV 522

Query: 497 YIDNYEPDSSKHLKNTQEMLSDLVE 521
           Y    E D+  +++   + +S+LV+
Sbjct: 523 YA---EADTQNNVEELSKAVSELVK 544


>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
           enzyme-metal complex, isomerase; 2.00A {Pyrococcus
           horikoshii}
          Length = 455

 Score =  114 bits (286), Expect = 4e-26
 Identities = 108/512 (21%), Positives = 187/512 (36%), Gaps = 73/512 (14%)

Query: 17  GTSGLRKKVSVFQQNSYTENFIQAI-------FNNVDCAEKTLVVGGDGRFYNHIVIQKI 69
           GT G+R           T  F   I              +  +VVG D R    ++ + +
Sbjct: 6   GTFGVRGIA----NEKITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEAL 61

Query: 70  IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129
           I    + G   I +G   I  TPAV    + + A GG ++TASHNP        ++ N  
Sbjct: 62  ISGLLSVGCDVIDVG---IAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLEPNGM 118

Query: 130 SGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALME 189
                 E   E++F                 D +     E+    +   D I+ Y+  ++
Sbjct: 119 GLKKEREAIVEELFF--------------KEDFDRAKWYEI--GEVRREDIIKPYIEAIK 162

Query: 190 NIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHP 249
           +  D +AI+K   F     +D  N         +L            N  P   F   +P
Sbjct: 163 SKVDVEAIKKRKPFVV---VDTSNGAGSLTLPYLLRE--LGCKVITVNAQPDGYFPARNP 217

Query: 250 DPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPG 309
           +PN  + K+  + +    + DFG A DGD DR++ + +       D    +VA+A L   
Sbjct: 218 EPNEENLKEFMEIVKALGA-DFGVAQDGDADRAVFIDENGRFIQGDKTFALVADAVLKEK 276

Query: 310 YATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGS 369
                  +  ++ TS  LD +A+K   K+  T  G       L     TI GEE+ G   
Sbjct: 277 GGG---LLVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEENGGV-- 331

Query: 370 NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429
                   I+         A+    +++I  K    +         Y  I T++    + 
Sbjct: 332 --------IFPEHVLGRDGAMTVAKVVEIFAKSGKKFSELIDELPKYYQIKTKR---HVE 380

Query: 430 DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDT 489
             R+ + N +         + A +  YT      V    G +++F++   ++ R SGT+ 
Sbjct: 381 GDRHAIVNKV--------AEMARERGYT------VDTTDGAKIIFED-GWVLVRASGTE- 424

Query: 490 ENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
               +R++    E  S +  +    +  +L+E
Sbjct: 425 --PIIRIFS---EAKSKEKAQEYLNLGIELLE 451


>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
           phosphoglucomutase, isomerase; 2.80A {Sulfolobus
           tokodaii}
          Length = 455

 Score = 93.0 bits (229), Expect = 2e-19
 Identities = 79/508 (15%), Positives = 160/508 (31%), Gaps = 63/508 (12%)

Query: 17  GTSGLRKKVSVFQQNSYTENFIQAI---FNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIA 73
           GT G+R  V        T   +  +             ++VG D R    ++++ +    
Sbjct: 6   GTDGVRGIV----NKELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGL 61

Query: 74  AANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGS 133
            + G      G   +  TPA+ + ++     GG+++TASHNPA       +  +      
Sbjct: 62  LSVGVEVYDGG---MAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRR 118

Query: 134 ASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFD 193
             E + ED+F                   N I    L          I  YV  + +  D
Sbjct: 119 EKENEIEDLFFTE--------------RFNTIEWSSLTTEVKREDRVISTYVNGILSHVD 164

Query: 194 FDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNL 253
            + I+K     +++ ID  N+V       +             N  PL       P  + 
Sbjct: 165 IEKIKKK---NYKVLIDPANSVGALSTPLVARALGCKIYTINGNLDPLFSARQPEPTFDS 221

Query: 254 IHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATG 313
           +        ++     D G A DGD DR++ +     V   D    +++    +      
Sbjct: 222 LKE---TAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAI 278

Query: 314 LVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSR 373
              V     +S   + +++      +         + + +     + G E  G       
Sbjct: 279 KKIVTAVSSSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENA--LAGFEENG----GFM 332

Query: 374 EKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRY 433
                +     ++           ++ +  A    +    +D L       + ++   + 
Sbjct: 333 YPPHQYVRDGAMSF---------ALMLELLANENVSSAELFDRLP------KYYLVKTKV 377

Query: 434 RLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENST 493
            LK  +    I +KI +        +++       G++++  +    + R SGT+     
Sbjct: 378 DLKPGLMVEEIYKKILEV-----YSTSSVKAITIDGVKIIGKD-FWFLVRKSGTE---PI 428

Query: 494 LRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
           +R+     E        N    L  +VE
Sbjct: 429 IRIMA---EAKDENVANNLVNELKKIVE 453


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 79/446 (17%), Positives = 134/446 (30%), Gaps = 204/446 (45%)

Query: 14  QKPGTSGLRKKVSVFQQNSYTENF-IQAIF----NNVDCAE------KTLVVGGDGRFYN 62
            K   S L + V          N  + AIF    N  D  E      +T         Y+
Sbjct: 138 DKKSNSALFRAVG-------EGNAQLVAIFGGQGNTDDYFEELRDLYQT---------YH 181

Query: 63  HIVIQKIIKIAAA--NGFARI------IIGKG-GIL-------STPAVSHLIRKYKA--S 104
            +V   +IK +A   +   R       +  +G  IL       +TP   +L+       S
Sbjct: 182 VLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL---SIPIS 237

Query: 105 GGII-LTA-SH----------NP-------AGAT---QDFGIKYNTSSGGSASEQQTEDI 142
             +I +   +H           P        GAT   Q  G+   T+   + +   + + 
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLV--TAVAIAET--DSWES 291

Query: 143 FEESKKITSYQIIEANDVDINHIGTKEL---ANMTI--SVI-DPIEN------------- 183
           F  S +    + I      +  IG +      N ++  S++ D +EN             
Sbjct: 292 FFVSVR----KAITV----LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343

Query: 184 --YVALMENIFDFDAIRKLLSFGFRIDIDCMNA-----VTGP----YAKEILERKLGAPT 232
                + + +   +     L  G +++I  +N      V+GP    Y   +  RK  AP+
Sbjct: 344 LTQEQVQDYV---NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400

Query: 233 GSVRNFIP-------------------------------LEDFGGCHPDPNL-IHAKDL- 259
           G  ++ IP                                +D        N+  +AKD+ 
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV----KNNVSFNAKDIQ 456

Query: 260 ---YD-------------------RMMMHD----------SA----DFG---AAC----- 275
              YD                     ++             A    DFG   A+      
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516

Query: 276 ----DGDGDRSMILGKGIFVNPSDSL 297
               DG G R +I+   + +NP D  
Sbjct: 517 HRNKDGTGVR-VIVAGTLDINPDDDY 541



 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 96/551 (17%), Positives = 162/551 (29%), Gaps = 240/551 (43%)

Query: 109 LTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTK 168
           LT SH   G+ +   +   T+S   AS+ Q  + F +        + E  +         
Sbjct: 9   LTLSH---GSLE-HVLLVPTASFFIASQLQ--EQFNKI-------LPEPTE--------- 46

Query: 169 ELA--NMTISVIDPIE------NYVA---LMENIFDFDAIRKLL------SFGFRIDIDC 211
             A  +   +   P E       YV+       +  FD +  L        +    DI  
Sbjct: 47  GFAADDEPTT---PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-- 101

Query: 212 MNAV----TGPYAKEILERKLGAPTGSVRNFIPLEDFGGCH----PDPNLIHAKDLYDRM 263
            +A+           +++ K       ++N+              P              
Sbjct: 102 -HALAAKLLQENDTTLVKTKE-----LIKNY-----ITARIMAKRPFDK----------- 139

Query: 264 MMHDSADFGAACDGDGDRSMIL--GKGI----FVNPSDSLAIMVANAGLIPGYAT--GLV 315
              +SA F A  +G+  + + +  G+G     F    + L  +         Y T   LV
Sbjct: 140 -KSNSALFRAVGEGNA-QLVAIFGGQGNTDDYF----EELRDL---------YQTYHVLV 184

Query: 316 GVARSMPTSAALDRVAEKLNLKLFETPTGW-KFFN---NL---LEN-------------- 354
           G          +   AE L+ +L  T     K F    N+   LEN              
Sbjct: 185 GD--------LIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235

Query: 355 ------GMITIC-------------GE--ESF-G-TGSNHSREKDGI-----------W- 379
                 G+I +              GE      G TG  HS+   G+           W 
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG--HSQ---GLVTAVAIAETDSWE 290

Query: 380 ----------SILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429
                     ++LF+   + VR        ++    Y     S      +P    +D   
Sbjct: 291 SFFVSVRKAITVLFF---IGVRC-------YE---AYPN--TS------LPPSILED--- 326

Query: 430 DFRYRLKNLIGS-----SFIGQKIKQAGDFVYTDSTNGNV-SDKQ-------GIR--VV- 473
                L+N  G      S      +Q  D+V  + TN ++ + KQ       G +  VV 
Sbjct: 327 ----SLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNGAKNLVVS 380

Query: 474 --------FDNHSRIIYRISGTDTEN---STLRVYIDN-YEPDS----SKHLKN-TQEML 516
                    +   R     SG D      S  ++   N + P +    S  L   +  + 
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440

Query: 517 SDLVEVSQRIS 527
            DLV+ +   +
Sbjct: 441 KDLVKNNVSFN 451



 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 102/646 (15%), Positives = 176/646 (27%), Gaps = 281/646 (43%)

Query: 3   CTI-VPTVPYQDQKPGTSGLRKKVSVFQQN--SYTENFIQAIFNNVDCAEKTLVVGGDGR 59
             + VPT  +       S L+++   F +     TE F           E T      G+
Sbjct: 18  HVLLVPTASF----FIASQLQEQ---FNKILPEPTEGFAADD-------EPTTPAELVGK 63

Query: 60  FYNHIV----------IQKIIKIAAANGFARIIIGKGGI------------LSTPAVSHL 97
           F  ++             +++       F    +    I             +      L
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLN-LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122

Query: 98  IRKY---KASGGIILTASHNPA----GATQDFGIKYNTSSGGSASEQQ--TEDIFEESKK 148
           I+ Y   +           N A        +  +      GG     Q  T+D FEE + 
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-V-AIFGG-----QGNTDDYFEELRD 175

Query: 149 I-TSYQ-IIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFR 206
           +  +Y  ++     D+            I           L E I       K+ + G  
Sbjct: 176 LYQTYHVLVG----DL------------IKFSAET-----LSELIRTTLDAEKVFTQGLN 214

Query: 207 I-----------DIDCM--NAVTGP---------YA----------KEILERKLGAPTG- 233
           I           D D +    ++ P         Y            E+     GA TG 
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGH 273

Query: 234 -----------SVRNFIPLEDFG-------------G--CH---PDPNLIHAKDLYDRMM 264
                         ++   E F              G  C+   P+ +L  +       +
Sbjct: 274 SQGLVTAVAIAETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS-------I 323

Query: 265 MHDSADFGAACDGDGDRS-MILGKGI-------FVN------PSDS-LAIMVANAG---L 306
           + DS +     + +G  S M+    +       +VN      P+   + I + N     +
Sbjct: 324 LEDSLE-----NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378

Query: 307 IPGYATGLVGVA---RSMPTSAALD--RV--AEKLNLKL-FET---PTGWKFFNNLLENG 355
           + G    L G+    R     + LD  R+  +E+   KL F     P    F ++LL   
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFSNRFLPVASPFHSHLLVPA 435

Query: 356 M-----------ITICGEE----SFGT--GSNHSREKDGIWSILFWLNILAVRGESLLD- 397
                       ++   ++     + T  GS+  R   G        +I     E ++D 
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSG--------SIS----ERIVDC 482

Query: 398 IVHK--HWATYGRNYYSRYDYLGIPTEKAQDF----MNDFRYRLKNLIG---SSFIGQKI 448
           I+     W                  E    F    + DF        G   +S +G   
Sbjct: 483 IIRLPVKW------------------ETTTQFKATHILDF--------GPGGASGLG--- 513

Query: 449 KQAGDFVYTDSTNGNVSDKQGIRVV----FDNHSRIIYRISGTDTE 490
                      T+ N  D  G+RV+     D            D +
Sbjct: 514 ---------VLTHRNK-DGTGVRVIVAGTLD---------INPDDD 540


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 37.3 bits (85), Expect = 0.009
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 23/51 (45%)

Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHL--KNTQE 514
           +KQ ++           ++       ++L++Y D    DS+  L  K T E
Sbjct: 18  EKQALK-----------KL------QASLKLYAD----DSAPALAIKATME 47


>1jmm_A Antigen I/II, protein I/II V-region, PAC protein; immune system,
           membrane protein; 2.40A {Streptococcus mutans} SCOP:
           b.30.6.1
          Length = 377

 Score = 33.5 bits (76), Expect = 0.11
 Identities = 20/157 (12%), Positives = 45/157 (28%), Gaps = 11/157 (7%)

Query: 352 LENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY---GR 408
           L      +         S  + +   +  IL   ++     E   D+            +
Sbjct: 58  LTTDGKFLKASAVDDAFSKSTSKAKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDK 117

Query: 409 NYYSRYDYLGIPTEKAQDFMN-----DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGN 463
             +S         +     +         Y   NL  S + G+KI +   + YT      
Sbjct: 118 AGWSTTVSNNSQVKWGSVLLERGQSATATY--TNLQNSYYNGKKISKI-VYKYTVDPKSK 174

Query: 464 VSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDN 500
              ++    +F + +  ++  + T        ++I N
Sbjct: 175 FQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKN 211


>3n4f_A Mandelate racemase/muconate lactonizing protein; structural
           genomics, protein structure INI NEW YORK structural
           genomix research consortium; HET: MSE; 1.88A
           {Geobacillus SP}
          Length = 392

 Score = 29.7 bits (66), Expect = 1.9
 Identities = 26/176 (14%), Positives = 45/176 (25%), Gaps = 17/176 (9%)

Query: 194 FDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNL 253
              I ++     +I ID  NA      KE+L          +      ++         L
Sbjct: 191 VRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWL 250

Query: 254 IHAKD--LYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIM----VANAGLI 307
                  L        S          G   ++    I+   +  + +            
Sbjct: 251 GQRGQNVLIADGEGLASPHLIEWAT-RGRVDVLQYDIIWPGFTHWMELGEKLDAHGLRSA 309

Query: 308 PGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWK---FFNNL-LENGMITI 359
           P       G+  S   SAA+       N +  E           +   +ENG I +
Sbjct: 310 PHCYGNAYGIYASGHLSAAVR------NFEFVEYDDITIEGMDVSGYRIENGEIHV 359


>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
           SCOP: c.67.1.1
          Length = 388

 Score = 29.3 bits (65), Expect = 2.0
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 231 PTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADF---GAACDGDGDRSMILGK 287
           PTG V     +        +  L    D     +++D A     GAA     +RS++   
Sbjct: 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS- 233

Query: 288 GIFVNPSDSLAIMVANAGLIPGYATG 313
                     A   A  G   G+  G
Sbjct: 234 --------GFAKTYAMTGWRVGFLAG 251


>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
           {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
           2hf2_A
          Length = 271

 Score = 29.2 bits (64), Expect = 2.3
 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 19/232 (8%)

Query: 82  IIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTED 141
            +      + P      ++ K  G   + AS N       F  +       S   +    
Sbjct: 14  FLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDE--ISFVAENGAL 71

Query: 142 IFEESKKITSYQIIEANDVDINHIGTKELANMTISVID--------PIENYVALMENIFD 193
           ++E  K++   ++       +     K+     ++             E +VALM   + 
Sbjct: 72  VYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYH 131

Query: 194 FDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGC-HPDPN 252
                K       +       +       ++++   A  G ++       F     P  +
Sbjct: 132 RLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLH 191

Query: 253 LIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANA 304
             +      +       +  A  D   D  M+             +  + NA
Sbjct: 192 KANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMAR--------YSFAMGNA 235


>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
           initiative, RSGI, structural genomics, ligase; HET: GLN;
           2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
           PDB: 1vcn_A 1vcm_A
          Length = 550

 Score = 29.2 bits (65), Expect = 2.3
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236
           V+  +   V  +E++   +AIR+        +   ++    PY +   E K      SV 
Sbjct: 148 VVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVA 207

Query: 237 NFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFG 272
                    G  PD  ++ +       +    A F 
Sbjct: 208 TLR----GVGIQPDILVLRSARPVPEEVRRKVALFT 239


>2bpa_1 Protein (subunit of bacteriophage PHIX174); protein-DNA complex,
           single strand, icosahedral virus, virus/DNA complex;
           HET: DNA; 3.00A {Enterobacteria phage PHIX174} SCOP:
           b.121.5.1 PDB: 1al0_F* 1cd3_F 1m06_F* 1m0f_F 1rb8_F*
          Length = 426

 Score = 29.1 bits (65), Expect = 2.6
 Identities = 5/57 (8%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 410 YYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSD 466
           Y     +LG              ++    I +++              +  N + + 
Sbjct: 102 YIDHAAFLGTINPDTNKI-PKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDAR 157


>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel,
           oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa}
           SCOP: b.70.1.1
          Length = 582

 Score = 28.6 bits (63), Expect = 4.1
 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 403 WATYGRNYY-SRYDYL-GIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDST 460
              YG   +  R+  L  +  +        + Y   +        Q I  +   +Y  ++
Sbjct: 18  VLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIV-SDGVIYVTAS 76

Query: 461 NGNV 464
              +
Sbjct: 77  YSRL 80


>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
           allosteric enzyme, enzyme thermostability; HET: COZ CIT;
           3.4A {Bacillus subtilis}
          Length = 363

 Score = 27.9 bits (61), Expect = 5.3
 Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 4/119 (3%)

Query: 203 FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDR 262
               ++          Y KE LE+              +        +     A+++   
Sbjct: 219 VTKMLEDIGEKEHAEAYLKEKLEKGERLMG----FGHRVYKTKDPRAEALRQKAEEVAGN 274

Query: 263 MMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSM 321
               D A    A           G+ ++ N     A ++          T     +R +
Sbjct: 275 DRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMV 333


>3iyn_O Hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM
           model interaction network, capsid protein, hexon
           protein; 3.60A {Human adenovirus 5}
          Length = 227

 Score = 27.9 bits (61), Expect = 5.8
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 115 PAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQ 153
            AGA QD+  + N  S G     +   I     +I   Q
Sbjct: 20  AAGAAQDYSTRINYMSAGPHMISRVNGIRAHRNRILLEQ 58


>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP
           synthetase, UTP, glutamine, amidotransferase, ligase,
           phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A
           3ihl_A*
          Length = 294

 Score = 27.9 bits (62), Expect = 5.8
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236
            +  +   V  +E++   +A R+      R +   ++    P      E+K      SVR
Sbjct: 165 CVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVR 224

Query: 237 NFIPLEDFGGCHPD 250
               L    G  PD
Sbjct: 225 ELRGL----GLSPD 234


>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
           rotamase, structural proteomics in europe, spine; 2.6A
           {Mycobacterium tuberculosis} SCOP: b.62.1.1
          Length = 191

 Score = 27.9 bits (61), Expect = 6.2
 Identities = 18/93 (19%), Positives = 29/93 (31%)

Query: 34  TENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPA 93
             NF+       D + +    G  G FY+  V  ++I+     G      G+GG     A
Sbjct: 48  VANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFA 107

Query: 94  VSHLIRKYKASGGIILTASHNPAGATQDFGIKY 126
                        ++  A+  P      F I  
Sbjct: 108 DEFHPELQFDKPYLLAMANAGPGTNGSQFFITV 140


>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
           {Pyrococcus furiosus} SCOP: a.103.1.1
          Length = 371

 Score = 27.5 bits (60), Expect = 7.0
 Identities = 8/74 (10%), Positives = 16/74 (21%)

Query: 248 HPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLI 307
                       Y   +        A          +  KGI +N      ++     + 
Sbjct: 261 KTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIP 320

Query: 308 PGYATGLVGVARSM 321
               T +  + R  
Sbjct: 321 IELYTTIFAMGRIA 334


>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
           diabetes, narcolepsy, autoimmune disease, structural
           proteomics in europe, spine, structural genomics; HET:
           NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
           PDB: 1s9v_A 2nna_A 1jk8_A*
          Length = 197

 Score = 27.7 bits (61), Expect = 7.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 397 DIVHKHWATYGRNYYSRYDYLG 418
           DIV  H A+ G N Y  Y   G
Sbjct: 2   DIVADHVASCGVNLYQFYGPSG 23


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0409    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,861,252
Number of extensions: 239387
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 46
Length of query: 542
Length of database: 5,693,230
Length adjustment: 97
Effective length of query: 445
Effective length of database: 3,341,562
Effective search space: 1486995090
Effective search space used: 1486995090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)