RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62] (542 letters) >d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Length = 203 Score = 178 bits (452), Expect = 1e-45 Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 20/196 (10%) Query: 4 TIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEK----TLVVGGDGR 59 + T PY QKPGTSGLRKKVS Q +Y ENF+Q+IFN + E L VGGDGR Sbjct: 7 RVQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGR 66 Query: 60 FYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKY-----KASGGIILTASHN 114 ++N I II++A AN + + +G+ G++STPA SH IRK GGIILTASHN Sbjct: 67 YFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHN 126 Query: 115 PAGAT-QDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIE---ANDVDINHIGTKEL 170 P G DFGIK+N +G A E T+ I+ + KI Y ++ ++++ IG + Sbjct: 127 PGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKF 186 Query: 171 -------ANMTISVID 179 ++ + V+D Sbjct: 187 EGTRLEKSHFEVKVVD 202 >d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 141 Score = 169 bits (430), Expect = 5e-43 Identities = 49/139 (35%), Positives = 87/139 (62%), Gaps = 6/139 (4%) Query: 408 RNYYSRYDYLGIPTEKAQDFMNDFRYRL--KNLIGSSFIGQ----KIKQAGDFVYTDSTN 461 RN+++RYDY + E A M D + ++ +G F +++A +F Y D + Sbjct: 1 RNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVD 60 Query: 462 GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 G+VS QG+R++F + SRII+R+SGT + +T+R+YID+YE D++K ++ Q ML+ L+ Sbjct: 61 GSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLIS 120 Query: 522 VSQRISCLRHYIGHTNPSI 540 ++ ++S L+ G T P++ Sbjct: 121 IALKVSQLQERTGRTAPTV 139 >d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Length = 129 Score = 154 bits (392), Expect = 1e-38 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 408 RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDK 467 RNYYSRYDY + + A M + + + +A + Y D + +VS Sbjct: 1 RNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQG----NKADIYDYVDPVDQSVSKN 56 Query: 468 QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRIS 527 QG+R VF + SRII+R+SGT + +T+R+Y + +E +H T L++++++ IS Sbjct: 57 QGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQH--ETATALANIIKLGLEIS 114 Query: 528 CLRHYIGHTNPSI 540 + + G P++ Sbjct: 115 DIAQFTGRNEPTV 127 >d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 190 Score = 152 bits (385), Expect = 7e-38 Identities = 99/186 (53%), Positives = 121/186 (65%), Gaps = 10/186 (5%) Query: 4 TIVPTVPYQDQKPGTSGLRKKVSVFQQN-SYTENFIQAIFN---NVDCAEKTLVVGGDGR 59 V T Y DQKPGTSGLRK+V VFQ + +Y ENFIQ+I + E TLVVGGDGR Sbjct: 4 VTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGR 63 Query: 60 FYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGAT 119 FY IQ I++IAAANG R++IG+ GILSTPAVS +IRK KA GGIILTASHNP G Sbjct: 64 FYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPN 123 Query: 120 QDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKE------LANM 173 DFGIK+N S+GG A E T+ IF+ SK I Y I VD+ +G ++ Sbjct: 124 GDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPF 183 Query: 174 TISVID 179 T+ ++D Sbjct: 184 TVEIVD 189 >d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Length = 120 Score = 105 bits (264), Expect = 7e-24 Identities = 72/121 (59%), Positives = 92/121 (76%), Gaps = 8/121 (6%) Query: 293 PSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLL 352 PSDSLA++ ANA LI + GL+G ARSMPTS ALD+VA K +KLFETPTGWKFF NL+ Sbjct: 2 PSDSLAVIAANANLI--FKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNLM 59 Query: 353 ENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGE------SLLDIVHKHWATY 406 + G+I +CGEESFGTGSNH REKDGIW++L WL ILA + + ++ +IV ++W + Sbjct: 60 DAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQYWQQF 119 Query: 407 G 407 G Sbjct: 120 G 120 >d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 117 Score = 104 bits (260), Expect = 2e-23 Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 1/117 (0%) Query: 292 NPSDSLAIMVANAGLIPGYA-TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNN 350 NPSDS+A++ AN IP + TG+ G ARSMPTS ALDRVA + L+ETPTGWKFF N Sbjct: 1 NPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGN 60 Query: 351 LLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYG 407 L++ +++CGEESFGTGS+H REKDG+W++L WL+ILA R +S+ DI+ HW +G Sbjct: 61 LMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFG 117 >d1kfia2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Length = 118 Score = 103 bits (257), Expect = 4e-23 Identities = 55/118 (46%), Positives = 70/118 (59%), Gaps = 7/118 (5%) Query: 181 IENYVALMENIFDFDAIRKLLSF-GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFI 239 +++Y LM+ +FDFD ++ L S F D M+ V GPYAK I LG S+ N Sbjct: 1 VQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCSKESLLNCD 60 Query: 240 PLEDFGGCHPDPNLIHAKDLYDRMMMH------DSADFGAACDGDGDRSMILGKGIFV 291 P EDFGG HPDPNL +A DL + + +H FGAACDGD DR+MILG+ FV Sbjct: 61 PSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGRQFFV 118 >d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 113 Score = 91.4 bits (226), Expect = 1e-19 Identities = 63/114 (55%), Positives = 79/114 (69%), Gaps = 4/114 (3%) Query: 181 IENYVALMENIFDFDAIRKLLS--FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNF 238 +E Y ++ NIFDF+A+++LLS +I ID M+ V GPY K+IL +LGAP S N Sbjct: 1 VEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNC 60 Query: 239 IPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFV 291 +PLEDFGG HPDPNL +A DL + M + DFGAA DGDGDR+MILG G FV Sbjct: 61 VPLEDFGGHHPDPNLTYAADLVETMKSGEH-DFGAAFDGDGDRNMILGKHGFFV 113 >d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]} Length = 104 Score = 47.4 bits (112), Expect = 3e-06 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 5/101 (4%) Query: 194 FDAIRKLLSF--GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDP 251 F IR ++ ++ +DC N V G A +++E + +F HPDP Sbjct: 6 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVI--PLYCEVDGNFPNHHPDP 63 Query: 252 NLIHAKDLYDRMMMHDSADFGAACDGDGDR-SMILGKGIFV 291 + ++AD G A DGDGDR ++ G + Sbjct: 64 GKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTII 104 >d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]} Length = 146 Score = 34.0 bits (77), Expect = 0.032 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Query: 47 CAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGG 106 E + VG DGR +++++I+ + G++ TP + + + G Sbjct: 38 RGEPCVAVGRDGRLSGPELVKQLIQGLVDC---GCQVSDVGMVPTPVLYYAANVLEGKSG 94 Query: 107 IILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEE 145 ++LT SHNP G K +G + + +Q + + E Sbjct: 95 VMLTGSHNPP---DYNGFKIV-VAGETLANEQIQALRER 129 >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 272 Score = 30.6 bits (69), Expect = 0.34 Identities = 12/63 (19%), Positives = 23/63 (36%) Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236 V+ + V +E++ +AIR+ + ++ PY + E K SV Sbjct: 138 VVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVA 197 Query: 237 NFI 239 Sbjct: 198 TLR 200 >d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} Length = 120 Score = 30.4 bits (68), Expect = 0.42 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 450 QAGDFVYTDSTNGNVSD--KQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYE 502 +AGDF Y + GNV + I FD R + + T + + Sbjct: 18 EAGDFYYLNYCVGNVGQDIESQINGAFDEMERRLALVGLTLDAVVQMDCLFRDVW 72 >d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage phi-X174 [TaxId: 10847]} Length = 426 Score = 29.0 bits (65), Expect = 0.94 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 4/64 (6%) Query: 410 YYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSD-KQ 468 Y +LG ++ I +++ K D + N D + Sbjct: 102 YIDHAAFLGTINPDTNKI-PKHLFQGYLNIYNNYF--KAPWMPDRTEANPNELNQDDARY 158 Query: 469 GIRV 472 G R Sbjct: 159 GFRC 162 >d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]} Length = 377 Score = 28.8 bits (64), Expect = 1.2 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 436 KNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLR 495 NL S + G+KI + + YT ++ +F + + ++ + T Sbjct: 148 TNLQNSYYNGKKISKI-VYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTS 206 Query: 496 VYIDN 500 ++I N Sbjct: 207 IFIKN 211 >d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Score = 28.7 bits (63), Expect = 1.4 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 1/73 (1%) Query: 249 PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIP 308 DP K ++ + + + + KGI +N ++ + Sbjct: 263 YDPRARIFKKYASKLGDKKLFEIAERLERLVEE-YLSKKGISINVDYWSGLVFYGMKIPI 321 Query: 309 GYATGLVGVARSM 321 T + + R Sbjct: 322 ELYTTIFAMGRIA 334 >d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Score = 27.5 bits (60), Expect = 2.9 Identities = 18/93 (19%), Positives = 29/93 (31%) Query: 35 ENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV 94 NF+ D + + G G FY+ V ++I+ G G+GG A Sbjct: 29 ANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFAD 88 Query: 95 SHLIRKYKASGGIILTASHNPAGATQDFGIKYN 127 ++ A+ P F I Sbjct: 89 EFHPELQFDKPYLLAMANAGPGTNGSQFFITVG 121 >d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4 [TaxId: 10843]} Length = 417 Score = 27.5 bits (61), Expect = 2.9 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 3/58 (5%) Query: 409 NYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSD 466 + + YLG F ++ I +++ K + D Y + +N D Sbjct: 92 SGWDSAAYLGTIPSSTLKV-PKFLHQGYLNIYNNYF--KPPWSDDLTYANPSNMPSED 146 >d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Score = 27.4 bits (60), Expect = 3.3 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 14/140 (10%) Query: 386 NILAVRGESLLDIVHKHWATYGR---------NYYSRYDYLGIPTEKAQDFMNDFRYRLK 436 + + ES+L + W Y Y +R+ E + + L Sbjct: 90 DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALV 149 Query: 437 NLIGSSF--IGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTL 494 F + +++ A + NG + + I V ++ + + TL Sbjct: 150 TWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTL 209 Query: 495 RVYIDNYEPDSSKHLKNTQE 514 VY +++E + L +T+ Sbjct: 210 TVYKESFES---QFLADTER 226 >d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]} Length = 83 Score = 26.9 bits (60), Expect = 3.9 Identities = 9/19 (47%), Positives = 10/19 (52%) Query: 397 DIVHKHWATYGRNYYSRYD 415 DIV H A+ G N Y Y Sbjct: 1 DIVADHVASCGVNLYQFYG 19 >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Score = 26.1 bits (56), Expect = 6.6 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 2/43 (4%) Query: 78 FARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQ 120 + + G + +++ GG+IL N Q Sbjct: 2 LGPLWLDVAGYELSAEDREILQHPTV-GGVILF-GRNYHDNQQ 42 >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 Score = 26.1 bits (56), Expect = 7.0 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 3/64 (4%) Query: 403 WATYGRNYY-SRYDYL-GIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDST 460 YG + R+ L + + + Y + Q I + +Y ++ Sbjct: 18 VLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIV-SDGVIYVTAS 76 Query: 461 NGNV 464 + Sbjct: 77 YSRL 80 >d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Score = 26.0 bits (56), Expect = 8.6 Identities = 8/39 (20%), Positives = 18/39 (46%) Query: 283 MILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSM 321 ++ +GI+ N ++ ++ G + T + VAR Sbjct: 299 VLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARIS 337 >d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]} Length = 283 Score = 25.7 bits (55), Expect = 8.6 Identities = 23/263 (8%), Positives = 65/263 (24%), Gaps = 25/263 (9%) Query: 91 TPAVSHLIRKYKASGGIILTASHNPAGATQDF----GIKYNTSSGGSASEQQTEDIFEES 146 I++ G ++ + +K G ++++ Sbjct: 30 PSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTIVYDQI 89 Query: 147 KKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIF----------DFDA 196 + IE + E + ++ E+ +N + + Sbjct: 90 GYTLLDETIETDVYAELISYLVEKNLVNQTIFHRGESNYVTEDNKYADFLQKMYSENRSI 149 Query: 197 IRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIH- 255 I + ++ + V P + + L + + Sbjct: 150 IIRHNEMLKYRTMNKLMIVLDPSESKTVIGNLKQKFKNKLTIFTTYNGHAEVTKLGHDKY 209 Query: 256 -AKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGL 314 + + + D + D +M+ +++ ++A + + Sbjct: 210 TGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFAVANATDSAKSHAKCVLPVSHRE 269 Query: 315 VGVARSMPTSAALDRVAEKLNLK 337 VA L +V +LK Sbjct: 270 GAVAY------LLKKV---FDLK 283 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0689 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,101,578 Number of extensions: 103837 Number of successful extensions: 332 Number of sequences better than 10.0: 1 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 33 Length of query: 542 Length of database: 2,407,596 Length adjustment: 90 Effective length of query: 452 Effective length of database: 1,171,896 Effective search space: 529696992 Effective search space used: 529696992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.0 bits)