HHsearch alignment for GI: 254781108 and conserved domain: COG4548
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism].
Probab=97.83 E-value=0.00028 Score=44.07 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=88.7
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCC--CHHHHHHHHHHH
Q ss_conf 9999997357788874458899999996113466666566766665169981588778777-7766--314899999999
Q gi|254781108|r 260 NEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGAS-AYQN--TLNTLQICEYMR 336 (398)
Q Consensus 260 ~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~-~~~~--~~~~~~~c~~~K 336 (398)
T Consensus 518 ~~~~~RImALePg~ytR~G~AIR~As~kL~~r----------pq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaR 587 (637)
T COG4548 518 ETVGPRIMALEPGYYTRDGAAIRHASAKLMER----------PQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEAR 587 (637)
T ss_pred CCCCHHHEECCCCCCCCCCHHHHHHHHHHHCC----------CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 55331221337664443109999999998347----------41124899944898543443233211153799999998
Q ss_pred HCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 7898899999547975589999985199818994698999999999999875
Q gi|254781108|r 337 NAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQ 388 (398)
Q Consensus 337 ~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I~~~i~ 388 (398)
T Consensus 588 k~Gi~VF~Vtld~e--a~~y~p~~fg-qngYa~V~~v~~LP~~L~~lyrkL~ 636 (637)
T COG4548 588 KSGIEVFNVTLDRE--AISYLPALFG-QNGYAFVERVAQLPGALPPLYRKLL 636 (637)
T ss_pred HCCCEEEEEEECCH--HHHHHHHHHC-CCCEEECCCHHHCCHHHHHHHHHHC
T ss_conf 65834799983330--5555288852-6746970240016055799999962