HHsearch alignment for GI: 254781108 and conserved domain: cd01456
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.72 E-value=1.8e-16 Score=117.27 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=113.3
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410
Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398)
Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398)
T Consensus 17 ~~~P~~~~lVlD~SGSM~~~~~---------------------------------------~g~~rl~~ak~a~~~~v~~ 57 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDG---------------------------------------GGETRLDNAKAALDETANA 57 (206)
T ss_pred CCCCCEEEEEEECCCCCCCCCC---------------------------------------CCCCHHHHHHHHHHHHHHH
T ss_conf 9898738999979878778787---------------------------------------7645999999999999985
Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCC----C---CCC--------CCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHH
Q ss_conf 220276877652134654126776543----1---123--------5689999999973577-88874458899999996
Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGN----Q---CTP--------LSNNLNEVKSRLNKLN-PYENTNTYPAMHHAYRE 287 (398)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~--------lt~~~~~~~~~I~~l~-~~G~T~~~~gl~~a~~~ 287 (398)
T Consensus 58 l~~~--------drvgLv~F~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~l~~~~G~T~l~~al~~a~~~ 129 (206)
T cd01456 58 LPDG--------TRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAY 129 (206)
T ss_pred CCCC--------CEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 7999--------87999997786777888513214565444345523778999999997457788964799999999986
Q ss_pred HCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH-----HHCCCEEEEEEECCCCCHHHHHHHHHC
Q ss_conf 113466666566766665169981588778777776631489999999-----978988999995479755899999851
Q gi|254781108|r 288 LYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYM-----RNAGMKIYSVAVSAPPEGQDLLRKCTD 362 (398)
Q Consensus 288 l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~-----K~~gi~IytIg~~~~~~~~~~l~~cAs 362 (398)
T Consensus 130 ~~~~------------~~~~IvLlTDG~~~~g~~------~~~~~~~l~~~~~~~~~v~V~tig~G~d-~d~~~L~~IA~ 190 (206)
T cd01456 130 VDPG------------RVNVVVLITDGEDTCGPD------PCEVARELAKRRTPAPPIKVNVIDFGGD-ADRAELEAIAE 190 (206)
T ss_pred HCCC------------CCCEEEEEECCCCCCCCC------HHHHHHHHHHHCCCCCCEEEEEEEECCC-CCHHHHHHHHH
T ss_conf 2778------------764799992376446888------5999999998317799958999971886-58999999997
Q ss_pred C-CCCE-EEECCHHH
Q ss_conf 9-9818-99469899
Q gi|254781108|r 363 S-SGQF-FAVNDSRE 375 (398)
Q Consensus 363 ~-~~~y-y~a~~~~~ 375 (398)
T Consensus 191 ~tgG~y~y~~~d~~~ 205 (206)
T cd01456 191 ATGGTYAYNQSDLAS 205 (206)
T ss_pred CCCCEEEEECCCCCC
T ss_conf 429789951676021