HHsearch alignment for GI: 254781108 and conserved domain: cd01461
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.83 E-value=4.6e-19 Score=132.75 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=118.9
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220
Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398)
Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398)
T Consensus 2 P~div~viD~SgSM~g~---------------------------------------------~l~~ak~a~~~~l~~l~~ 36 (171)
T cd01461 2 PKEVVFVIDTSGSMSGT---------------------------------------------KIEQTKEALLTALKDLPP 36 (171)
T ss_pred CCEEEEEECCCCCCCCH---------------------------------------------HHHHHHHHHHHHHHHCCC
T ss_conf 84699999179889863---------------------------------------------999999999999982998
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCC---CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2768776521346541267765431123568---9999999973577888744588999999961134666665667666
Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIVGNQCTPLSN---NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~---~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
T Consensus 37 --------~d~~~iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~G~T~i~~aL~~a~~~l~~~----------~~ 98 (171)
T cd01461 37 --------GDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTNMNDALEAALELLNSS----------PG 98 (171)
T ss_pred --------CCEEEEEEECCEEEEECCCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC----------CC
T ss_conf --------787999998780659807753079999999998875478899866999999999988635----------79
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECCHHHHHHHH
Q ss_conf 65169981588778777776631489999999978988999995479755899999851-998189946989999999
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVNDSRELLESF 380 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~~~~L~~aF 380 (398)
T Consensus 99 ~~~~iillTDG~~~~~------~~~~~~~~~~~~~~i~i~tig~G~~-~~~~~L~~iA~~~~G~~~~v~~~~~l~~~~ 169 (171)
T cd01461 99 SVPQIILLTDGEVTNE------SQILKNVREALSGRIRLFTFGIGSD-VNTYLLERLAREGRGIARRIYETDDIESQL 169 (171)
T ss_pred CCCEEEEECCCCCCCH------HHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 8618999757886886------8999999997448963999997897-999999999972898899889878999976