HHsearch alignment for GI: 254781108 and conserved domain: cd01464
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.61 E-value=2.7e-14 Score=104.11 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=115.9
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220
Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398)
Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398)
T Consensus 3 rlpvvlvlD~SGSM~G~---------------------------------------------~i~~~k~al~~~~~~L~~ 37 (176)
T cd01464 3 RLPIYLLLDTSGSMAGE---------------------------------------------PIEALNQGLQMLQSELRQ 37 (176)
T ss_pred CCCEEEEEECCCCCCCH---------------------------------------------HHHHHHHHHHHHHHHHHC
T ss_conf 35789999789999984---------------------------------------------799999999999999711
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 27687765213465412677654311235689999999973577888744588999999961134666665667666651
Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKK 306 (398)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k 306 (398)
T Consensus 38 d~~--a~~~~~vsVItF~s~a~--~~~pl~~-~~--~~~~~~L~a~G~T~~g~al~~a~~~l~~~~~~~~-~~~~~~~~P 109 (176)
T cd01464 38 DPY--ALESVEISVITFDSAAR--VIVPLTP-LE--SFQPPRLTASGGTSMGAALELALDCIDRRVQRYR-ADQKGDWRP 109 (176)
T ss_pred CCC--CHHEEEEEEEEECCCEE--EECCCCC-HH--HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCE
T ss_conf 831--01132699999789517--8058634-76--6475547778998199999999999998652236-556677531
Q ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHH
Q ss_conf 699815887787777766314899999999789889999954797558999998519981899469899999999
Q gi|254781108|r 307 FVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFD 381 (398)
Q Consensus 307 ~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~ 381 (398)
T Consensus 110 ~I~LlTDG~PtD~-~----~~~~~~~~~~~~~~~~i~a~giG~d-ad~~~L~~is~~---~~~~~~~~~f~~ff~ 175 (176)
T cd01464 110 WVFLLTDGEPTDD-L----TAAIERIKEARDSKGRIVACAVGPK-ADLDTLKQITEG---VPLLDDALSGLNFFK 175 (176)
T ss_pred EEEEECCCCCCCC-H----HHHHHHHHHHHHCCCEEEEEEEECC-CCHHHHHHHHCC---CCCCCCHHHHHHHHC
T ss_conf 7999668998875-8----9999999988863976999997387-189999988577---745345345888508