HHsearch alignment for GI: 254781108 and conserved domain: cd01472

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.69  E-value=1.7e-15  Score=111.31  Aligned_cols=160  Identities=19%  Similarity=0.281  Sum_probs=115.9

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r  148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA  227 (398)
Q Consensus       148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  227 (398)
T Consensus         1 aDi~fvlD~S~Sv~~~~---------------------------------------------f~~~k~fi~~li~~~~i~   35 (164)
T cd01472           1 ADIVFLVDGSESIGLSN---------------------------------------------FNLVKDFVKRVVERLDIG   35 (164)
T ss_pred             CCEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCCCC
T ss_conf             97999997979988799---------------------------------------------999999999999964768


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf             76877652134654126776543112356899999999735778-88744588999999961134666665667666651
Q gi|254781108|r  228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKK  306 (398)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k  306 (398)
T Consensus        36 -----~~~~rvgvv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~~~~g~t~~~~AL~~~~~~~~~~~~~~-----r~~~~k  105 (164)
T cd01472          36 -----PDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTNTGKALKYVRENLFTEASGS-----REGVPK  105 (164)
T ss_pred             -----CCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-----CCCCEE
T ss_conf             -----8860899998247415874454669889999999861166897529999999999863535787-----678515


Q ss_pred             EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECC
Q ss_conf             6998158877877777663148999999997898899999547975589999985199--81899469
Q gi|254781108|r  307 FVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS--GQFFAVND  372 (398)
Q Consensus       307 ~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~--~~yy~a~~  372 (398)
T Consensus       106 vvvllTDG~s~~--------~~~~~a~~lr~~Gi~v~~VGig-~-~~~~~L~~iAs~p~~~~~~~~~~  163 (164)
T cd01472         106 VLVVITDGKSQD--------DVEEPAVELKQAGIEVFAVGVK-N-ADEEELKQIASDPKELYVFNVAD  163 (164)
T ss_pred             EEEEEECCCCCC--------HHHHHHHHHHHCCCEEEEEECC-C-CCHHHHHHHHCCCCHHEEEECCC
T ss_conf             999983799864--------0889999999889889999788-4-79999999967993783896588