HHsearch alignment for GI: 254781108 and conserved domain: cd01472
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.69 E-value=1.7e-15 Score=111.31 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=115.9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
T Consensus 1 aDi~fvlD~S~Sv~~~~---------------------------------------------f~~~k~fi~~li~~~~i~ 35 (164)
T cd01472 1 ADIVFLVDGSESIGLSN---------------------------------------------FNLVKDFVKRVVERLDIG 35 (164)
T ss_pred CCEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCCCC
T ss_conf 97999997979988799---------------------------------------------999999999999964768
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 76877652134654126776543112356899999999735778-88744588999999961134666665667666651
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKK 306 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k 306 (398)
T Consensus 36 -----~~~~rvgvv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~~~~g~t~~~~AL~~~~~~~~~~~~~~-----r~~~~k 105 (164)
T cd01472 36 -----PDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTNTGKALKYVRENLFTEASGS-----REGVPK 105 (164)
T ss_pred -----CCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-----CCCCEE
T ss_conf -----8860899998247415874454669889999999861166897529999999999863535787-----678515
Q ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECC
Q ss_conf 6998158877877777663148999999997898899999547975589999985199--81899469
Q gi|254781108|r 307 FVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS--GQFFAVND 372 (398)
Q Consensus 307 ~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~--~~yy~a~~ 372 (398)
T Consensus 106 vvvllTDG~s~~--------~~~~~a~~lr~~Gi~v~~VGig-~-~~~~~L~~iAs~p~~~~~~~~~~ 163 (164)
T cd01472 106 VLVVITDGKSQD--------DVEEPAVELKQAGIEVFAVGVK-N-ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred EEEEEECCCCCC--------HHHHHHHHHHHCCCEEEEEECC-C-CCHHHHHHHHCCCCHHEEEECCC
T ss_conf 999983799864--------0889999999889889999788-4-79999999967993783896588