HHsearch alignment for GI: 254781108 and conserved domain: cd01476
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.60 E-value=6.7e-14 Score=101.79 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=112.9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
T Consensus 1 lDl~fllD~S~Sv~~~--f--------------------------------------------~~~k~F~~~lv~~f~i- 33 (163)
T cd01476 1 LDLLFVLDSSGSVRGK--F--------------------------------------------EKYKKYIERIVEGLEI- 33 (163)
T ss_pred CCEEEEEECCCCHHHH--H--------------------------------------------HHHHHHHHHHHHHHCC-
T ss_conf 9299999188886673--9--------------------------------------------9999999999996146-
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCC--CCCCCCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 7687765213465412677654311--2356899999999735778-887445889999999611346666656676666
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQC--TPLSNNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
T Consensus 34 ----~~~~~rVgvv~ys~~~~~~i~f~l~~~~~~~~l~~~I~~i~~~~g~T~tg~AL~~a~~~~~~~~g~R------~~~ 103 (163)
T cd01476 34 ----GPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFIGGTTATGAAIEVALQQLDPSEGRR------EGI 103 (163)
T ss_pred ----CCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCC------CCC
T ss_conf ----8885389999966987078887577779999999999752036898548999999999721420678------996
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCEEEEEEECCC-CCHHHHHHHHHCCCCCEEE
Q ss_conf 516998158877877777663148999999997-8988999995479-7558999998519981899
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRN-AGMKIYSVAVSAP-PEGQDLLRKCTDSSGQFFA 369 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~-~gi~IytIg~~~~-~~~~~~l~~cAs~~~~yy~ 369 (398)
T Consensus 104 ~kv~vviTDG~s~d~--------~~~~a~~lr~~~gv~v~avgVG~~~~~d~~eL~~Ia~~~~~Vft 162 (163)
T cd01476 104 PKVVVVLTDGRSHDD--------PEKQARILRAVPNIETFAVGTGDPGTVDTEELHSITGNEDHIFT 162 (163)
T ss_pred EEEEEEEECCCCCCC--------HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 169999818987664--------88999999970998999998388650159999986499725457