HHsearch alignment for GI: 254781108 and conserved domain: pfam00362
>pfam00362 Integrin_beta Integrin, beta chain. Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer. The sequences repeats have been trimmed due to an overlap with EGF.
Probab=97.00 E-value=0.023 Score=32.56 Aligned_cols=134 Identities=13% Similarity=0.221 Sum_probs=79.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC------------
Q ss_conf 311235689999999973577888744588-9999999611346666656676666516998158877------------
Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYP-AMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN------------ 316 (398)
Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~-gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------ 316 (398)
T Consensus 179 ~~~l~LT~~~~~F~~~v~~q~iSgNlD~PEGGfDAlmQ~aVC~~~IGWR~----~arrllv~~TDa~fH~AgDGkL~GIv 254 (424)
T pfam00362 179 RHVLSLTDDTDRFNEEVKKQKISGNLDAPEGGFDAIMQAAVCGEEIGWRN----EARRLLVFTTDAGFHFAGDGKLGGIV 254 (424)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 20024677789999998746364677787501777778876142337777----85289999858875135776334353
Q ss_pred --CCCCCCC-----------CCH-HHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHHHC-CCCCEE--EECCHHHHHH
Q ss_conf --8777776-----------631-48999999997898-8999995479755899999851-998189--9469899999
Q gi|254781108|r 317 --SGASAYQ-----------NTL-NTLQICEYMRNAGM-KIYSVAVSAPPEGQDLLRKCTD-SSGQFF--AVNDSRELLE 378 (398)
Q Consensus 317 --~~~~~~~-----------~~~-~~~~~c~~~K~~gi-~IytIg~~~~~~~~~~l~~cAs-~~~~yy--~a~~~~~L~~ 378 (398)
T Consensus 255 ~PNDg~CHL~~~g~Yt~s~~~DYPSv~ql~~kl~ennI~~IFAVt~----~~~~~Y~~Ls~~i~gs~vg~L~~DSsNIv~ 330 (424)
T pfam00362 255 EPNDGQCHLDDNGEYTASTTLDYPSVGQLAEKLSENNINPIFAVTE----NVVDLYKELSELIPGSTVGVLSSDSSNVVQ 330 (424)
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECH----HHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 4888730448987614456678888899999998649259999750----245899999975776525662467502899
Q ss_pred HHHHHHHHHHHCE
Q ss_conf 9999999875124
Q gi|254781108|r 379 SFDKITDKIQEQS 391 (398)
Q Consensus 379 aF~~I~~~i~~~r 391 (398)
T Consensus 331 LI~~aY~ki~S~V 343 (424)
T pfam00362 331 LIKDAYNKISSKV 343 (424)
T ss_pred HHHHHHHHHHEEE
T ss_conf 9999998752289