HHsearch alignment for GI: 254781108 and conserved domain: pfam04056
>pfam04056 Ssl1 Ssl1-like. Ssl1-like proteins are 40kDa subunits of the Transcription factor II H complex.
Probab=95.82 E-value=0.12 Score=28.25 Aligned_cols=174 Identities=17% Similarity=0.173 Sum_probs=109.7
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220
Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398)
Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398)
T Consensus 52 iRhl~iilD~S~aM~e~Dlk----------------------------------------P~R~~~~l~~l~~Fi~efFd 91 (250)
T pfam04056 52 IRHLYIVLDCSRAMEEKDLR----------------------------------------PSRFACTIKYLETFVEEFFD 91 (250)
T ss_pred EEEEEEEEECCHHHHHCCCC----------------------------------------CCHHHHHHHHHHHHHHHHHH
T ss_conf 16899999882767635158----------------------------------------64899999999999999874
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 276877652134654126776543112356899999999735---77888744588999999961134666665667666
Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNK---LNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~---l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
T Consensus 92 qNP-----iSQlgii~~rn~~-a~~ls~lsgnp~~hi~aL~~~~~~~~~G~pSLqN~Le~a~~~L~~~P~~--------~ 157 (250)
T pfam04056 92 QNP-----ISQIGLITCKDGR-AHRLTDLTGNPRVHIKALKSLREAECGGDPSLQNALELARASLKHVPSH--------G 157 (250)
T ss_pred CCC-----CCCEEEEEEECCE-EEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC--------C
T ss_conf 398-----3022799996571-3783325799899999999874069999920899999999887508987--------8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
Q ss_conf 6516998158877877777663148999999997898899999547975589999985199818994698999999999
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDK 382 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~ 382 (398)
T Consensus 158 sREILii~gSL~T------~DPgdI~~tI~~l~~~~IrvsvI~Laa--Ev~Ick~l~~~T~G~y~V~lde~Hfk~ll~~ 228 (250)
T pfam04056 158 SREVLIIFGSLST------CDPGDIYSTIDTLKKEKIRCSVIGLSA--EVFICKELCKATNGTYSVALDETHLKELLLE 228 (250)
T ss_pred CEEEEEEEEECCC------CCCCCHHHHHHHHHHCCCEEEEEEECH--HHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf 5489999820444------588659999999997590799987338--9999999999749988875699999999995