HHsearch alignment for GI: 254781108 and conserved domain: pfam04056

>pfam04056 Ssl1 Ssl1-like. Ssl1-like proteins are 40kDa subunits of the Transcription factor II H complex.
Probab=95.82  E-value=0.12  Score=28.25  Aligned_cols=174  Identities=17%  Similarity=0.173  Sum_probs=109.7

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             54313575055666666766631012331023012688765403101343220112555333410002456655410220
Q gi|254781108|r  147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK  226 (398)
Q Consensus       147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  226 (398)
T Consensus        52 iRhl~iilD~S~aM~e~Dlk----------------------------------------P~R~~~~l~~l~~Fi~efFd   91 (250)
T pfam04056        52 IRHLYIVLDCSRAMEEKDLR----------------------------------------PSRFACTIKYLETFVEEFFD   91 (250)
T ss_pred             EEEEEEEEECCHHHHHCCCC----------------------------------------CCHHHHHHHHHHHHHHHHHH
T ss_conf             16899999882767635158----------------------------------------64899999999999999874


Q ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             276877652134654126776543112356899999999735---77888744588999999961134666665667666
Q gi|254781108|r  227 AIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNK---LNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR  303 (398)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~---l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~  303 (398)
T Consensus        92 qNP-----iSQlgii~~rn~~-a~~ls~lsgnp~~hi~aL~~~~~~~~~G~pSLqN~Le~a~~~L~~~P~~--------~  157 (250)
T pfam04056        92 QNP-----ISQIGLITCKDGR-AHRLTDLTGNPRVHIKALKSLREAECGGDPSLQNALELARASLKHVPSH--------G  157 (250)
T ss_pred             CCC-----CCCEEEEEEECCE-EEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC--------C
T ss_conf             398-----3022799996571-3783325799899999999874069999920899999999887508987--------8


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
Q ss_conf             6516998158877877777663148999999997898899999547975589999985199818994698999999999
Q gi|254781108|r  304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDK  382 (398)
Q Consensus       304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~  382 (398)
T Consensus       158 sREILii~gSL~T------~DPgdI~~tI~~l~~~~IrvsvI~Laa--Ev~Ick~l~~~T~G~y~V~lde~Hfk~ll~~  228 (250)
T pfam04056       158 SREVLIIFGSLST------CDPGDIYSTIDTLKKEKIRCSVIGLSA--EVFICKELCKATNGTYSVALDETHLKELLLE  228 (250)
T ss_pred             CEEEEEEEEECCC------CCCCCHHHHHHHHHHCCCEEEEEEECH--HHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf             5489999820444------588659999999997590799987338--9999999999749988875699999999995