HHsearch alignment for GI: 254781108 and conserved domain: pfam05762
>pfam05762 VWA_CoxE VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA type domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.
Probab=97.16 E-value=0.011 Score=34.57 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=44.8
Q ss_pred CHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999973577--88874458899999996113466666566766665169981588778777776631489999999
Q gi|254781108|r 258 NLNEVKSRLNKLN--PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYM 335 (398)
Q Consensus 258 ~~~~~~~~I~~l~--~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~ 335 (398)
T Consensus 111 d~~~al~~~~~~~~~~~GgT~ig~al~~f~~~~~~---------~~l~~~t~ViilsDg~~~~~-----~~~l~~~l~~L 176 (223)
T pfam05762 111 DPAEALLRVSARVEDWGGGTRIGAALAYFNELWTR---------PALSRGAVVVLVSDGLERGD-----SEELLAEVARL 176 (223)
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC---------CCCCCCCEEEEEECCCCCCC-----HHHHHHHHHHH
T ss_conf 99999999998603667997499999999985030---------34678867999723010388-----31899999999
Q ss_pred HHCCCEEEEEE
Q ss_conf 97898899999
Q gi|254781108|r 336 RNAGMKIYSVA 346 (398)
Q Consensus 336 K~~gi~IytIg 346 (398)
T Consensus 177 ~~~~~rviWLN 187 (223)
T pfam05762 177 VRSARRLVWLN 187 (223)
T ss_pred HHHCCEEEEEC
T ss_conf 98378799989