HHsearch alignment of GI: 254781108 and MMDB domain: 1pt6_A_
>1pt6_A (A:) Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens}
Probab=99.61 E-value=2.2e-14 Score=104.28 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=130.4
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410
Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398)
Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398)
...++|+++|+|.||||.... ..+.+...+...
T Consensus 4 ~~~~~divfvlD~SgSM~~~~-----------------------------------------------~~~~~~~~~~~~ 36 (213)
T 1pt6_A 4 CSTQLDIVIVLDGSNSIYPWD-----------------------------------------------SVTAFLNDLLKR 36 (213)
T ss_dssp ---CEEEEEEEECCTTCCCHH-----------------------------------------------HHHHHHHHHHTT
T ss_pred CCCCEEEEEEEECCCCCCCHH-----------------------------------------------HHHHHHHHHHHH
T ss_conf 998448999997888876899-----------------------------------------------999999999997
Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22027687765213465412677654311235689999999973577888744588999999961134666665667666
Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
+... ....+.+.+.|..............+...+...++.+...+++....|...+.......... ......
T Consensus 37 l~~~-----~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 108 (213)
T 1pt6_A 37 MDIG-----PKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEA---RGARRG 108 (213)
T ss_dssp SCBS-----TTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGG---GTCCTT
T ss_pred HCCC-----CCCCEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---CCCCCC
T ss_conf 1458-----88738999999644789982666676899999998787616854502677778888751422---377789
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC--------CHHHHHHHHHCCC--CCEEEECCH
Q ss_conf 651699815887787777766314899999999789889999954797--------5589999985199--818994698
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP--------EGQDLLRKCTDSS--GQFFAVNDS 373 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~--------~~~~~l~~cAs~~--~~yy~a~~~ 373 (398)
.+|++||+|||..+.. .........+|+.|++||+||+|.+. .....|+.+|+.+ ++||.+.+.
T Consensus 109 ~~~~iiliTDG~~~~~------~~~~~~~~~~~~~~v~i~~igig~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~ 182 (213)
T 1pt6_A 109 VKKVMVIVTDGESHDN------HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE 182 (213)
T ss_dssp CEEEEEEEESSCCSCS------HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred CCEEEEEEECCCCCCC------HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCH
T ss_conf 9547999956888884------2089999999988998999997166554443431359999998669985508992899
Q ss_pred HHHHHHHHHHHHHHHHCE
Q ss_conf 999999999999875124
Q gi|254781108|r 374 RELLESFDKITDKIQEQS 391 (398)
Q Consensus 374 ~~L~~aF~~I~~~i~~~r 391 (398)
++|.++|++|.+.+.+..
T Consensus 183 ~~l~~~~~~i~~~~~~~~ 200 (213)
T 1pt6_A 183 LALVTIVKTLGERIFALE 200 (213)
T ss_dssp GGGGGGHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999983566