HHsearch alignment of GI: 254781108 and MMDB domain: 1pt6_A_

>1pt6_A (A:) Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens}
Probab=99.61  E-value=2.2e-14  Score=104.28  Aligned_cols=187  Identities=16%  Similarity=0.201  Sum_probs=130.4

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             55654313575055666666766631012331023012688765403101343220112555333410002456655410
Q gi|254781108|r  144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS  223 (398)
Q Consensus       144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  223 (398)
                      ...++|+++|+|.||||....                                               ..+.+...+...
T Consensus         4 ~~~~~divfvlD~SgSM~~~~-----------------------------------------------~~~~~~~~~~~~   36 (213)
T 1pt6_A            4 CSTQLDIVIVLDGSNSIYPWD-----------------------------------------------SVTAFLNDLLKR   36 (213)
T ss_dssp             ---CEEEEEEEECCTTCCCHH-----------------------------------------------HHHHHHHHHHTT
T ss_pred             CCCCEEEEEEEECCCCCCCHH-----------------------------------------------HHHHHHHHHHHH
T ss_conf             998448999997888876899-----------------------------------------------999999999997


Q ss_pred             HHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             22027687765213465412677654311235689999999973577888744588999999961134666665667666
Q gi|254781108|r  224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR  303 (398)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~  303 (398)
                      +...     ....+.+.+.|..............+...+...++.+...+++....|...+..........   ......
T Consensus        37 l~~~-----~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  108 (213)
T 1pt6_A           37 MDIG-----PKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEA---RGARRG  108 (213)
T ss_dssp             SCBS-----TTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGG---GTCCTT
T ss_pred             HCCC-----CCCCEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---CCCCCC
T ss_conf             1458-----88738999999644789982666676899999998787616854502677778888751422---377789


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC--------CHHHHHHHHHCCC--CCEEEECCH
Q ss_conf             651699815887787777766314899999999789889999954797--------5589999985199--818994698
Q gi|254781108|r  304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP--------EGQDLLRKCTDSS--GQFFAVNDS  373 (398)
Q Consensus       304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~--------~~~~~l~~cAs~~--~~yy~a~~~  373 (398)
                      .+|++||+|||..+..      .........+|+.|++||+||+|.+.        .....|+.+|+.+  ++||.+.+.
T Consensus       109 ~~~~iiliTDG~~~~~------~~~~~~~~~~~~~~v~i~~igig~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~  182 (213)
T 1pt6_A          109 VKKVMVIVTDGESHDN------HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE  182 (213)
T ss_dssp             CEEEEEEEESSCCSCS------HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred             CCEEEEEEECCCCCCC------HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCH
T ss_conf             9547999956888884------2089999999988998999997166554443431359999998669985508992899


Q ss_pred             HHHHHHHHHHHHHHHHCE
Q ss_conf             999999999999875124
Q gi|254781108|r  374 RELLESFDKITDKIQEQS  391 (398)
Q Consensus       374 ~~L~~aF~~I~~~i~~~r  391 (398)
                      ++|.++|++|.+.+.+..
T Consensus       183 ~~l~~~~~~i~~~~~~~~  200 (213)
T 1pt6_A          183 LALVTIVKTLGERIFALE  200 (213)
T ss_dssp             GGGGGGHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999999999983566