HHsearch alignment of GI: 254781108 and MMDB domain: 1yvr_A_365-538
>1yvr_A (A:365-538) RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis}
Probab=99.26 E-value=2.8e-10 Score=79.69 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=96.6
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102
Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398)
Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398)
..++++++++|.||||.....+... ...+.+...+....
T Consensus 2 ~~~~~vv~liD~SgSM~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~ 40 (174)
T 1yvr_A 2 PTGKRFLLAIDVSASMNQRVLGSIL-----------------------------------------NASVVAAAMCMLVA 40 (174)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSC-----------------------------------------BHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCC-----------------------------------------CHHHHHHHHHHHHH
T ss_conf 7786179999775554285007773-----------------------------------------69999999999987
Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 20276877652134654126776543112356899999999735778887445889999999611346666656676666
Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
.. ..+.+.+.|+....... .+...+...+...+.. .+.|+|+++.+|.++.+.+..
T Consensus 41 ~~--------~~~v~li~F~~~~~~~~-~~~~~~~~~~~~~l~~-~~~g~T~~~~al~~a~~~~~~-------------- 96 (174)
T 1yvr_A 41 RT--------EKDSHMVAFSDEMLPCP-ITVNMLLHEVVEKMSD-ITMGSTDCALPMLWAQKTNTA-------------- 96 (174)
T ss_dssp HH--------CSSEEEEEESSSEECCS-CCTTSCHHHHHHHHTT-CCCSCCCTTHHHHHHHHTTCC--------------
T ss_pred HH--------CCCCEEEEECCCEEECC-CCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCC--------------
T ss_conf 42--------59977999769658789-9865409999999853-678983599999999962656--------------
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 51699815887787777766314899999999789889999954797
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP 351 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~ 351 (398)
++++|++|||+.+.+.. ........++.++..+|.+|+||++.+.
T Consensus 97 ~~~ii~iTDG~~~~~~~--~~~~~~~~~~~~~~~~v~~~~vg~g~~~ 141 (174)
T 1yvr_A 97 ADIFIVFTDCETNVEDV--HPATALKQYREKMGIPAKLIVCAMTSNG 141 (174)
T ss_dssp CSEEEEEECCCCCSSSC--CHHHHHHHHHHHHTCCCEEEEEECSSSS
T ss_pred CCEEEEECCCCCCCCCC--CHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 88899971798678988--9999999999984899749999766888