HHsearch alignment of GI: 254781108 and MMDB domain: 2b2x_A_
>2b2x_A (A:) Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus}
Probab=99.60 E-value=3.7e-14 Score=102.98 Aligned_cols=187 Identities=18% Similarity=0.257 Sum_probs=127.9
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 45565431357505566666676663101233102301268876540310134322011255533341000245665541
Q gi|254781108|r 143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN 222 (398)
Q Consensus 143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 222 (398)
....++|+++|+|.||||.... ..+.+...+..
T Consensus 18 ~~~~~~di~~viD~SgSM~~~~-----------------------------------------------~~~~~~~~~~~ 50 (223)
T 2b2x_A 18 ECSTQLDIVIVLDGSNSIYPWE-----------------------------------------------SVIAFLNDLLK 50 (223)
T ss_dssp ----CEEEEEEEECSTTCCCHH-----------------------------------------------HHHHHHHHHHT
T ss_pred CCCCCEEEEEEEECCCCCCCHH-----------------------------------------------HHHHHHHHHHH
T ss_conf 8998657999995889872799-----------------------------------------------99999999986
Q ss_pred HHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 02202768776521346541267765431123568999999997357--7888744588999999961134666665667
Q gi|254781108|r 223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKL--NPYENTNTYPAMHHAYRELYNEKESSHNTIG 300 (398)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l--~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~ 300 (398)
.+... ....+.+.+.|..............+.......+..+ ...|+|+...++..+...+.......
T Consensus 51 ~l~~~-----~~~~~v~ii~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 120 (223)
T 2b2x_A 51 RMDIG-----PKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEARGA----- 120 (223)
T ss_dssp TSCCS-----TTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTC-----
T ss_pred HHCCC-----CCCEEEEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----
T ss_conf 63458-----88607999997400578527545567999999997545443320101577877777622432378-----
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEE
Q ss_conf 6666516998158877877777663148999999997898899999547975--------589999985199--818994
Q gi|254781108|r 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE--------GQDLLRKCTDSS--GQFFAV 370 (398)
Q Consensus 301 ~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~--------~~~~l~~cAs~~--~~yy~a 370 (398)
..+..|+|||+|||..+.. ......+..+++++|+||+||+|.+.. +...|+.+|+.+ .++|.+
T Consensus 121 ~~~~~~~ivliTDG~~~~~------~~~~~~~~~~~~~~i~i~~igig~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~ 194 (223)
T 2b2x_A 121 RRGVKKVMVIVTDGESHDN------YRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 194 (223)
T ss_dssp CTTSEEEEEEEESSCCTTG------GGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEE
T ss_pred CCCCCEEEEEEECCCCCCC------HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEC
T ss_conf 8787337999846887762------3389999999753987999997066554433432479999998569986618983
Q ss_pred CCHHHHHHHHHHHHHHHHHCEE
Q ss_conf 6989999999999998751245
Q gi|254781108|r 371 NDSRELLESFDKITDKIQEQSV 392 (398)
Q Consensus 371 ~~~~~L~~aF~~I~~~i~~~r~ 392 (398)
++.++|.++|+.|.+.+..+.-
T Consensus 195 ~~~~~L~~~~~~i~~~~~~~~~ 216 (223)
T 2b2x_A 195 SDELALVTIVKALGERIFALEA 216 (223)
T ss_dssp SSTTGGGGGHHHHHTTTC----
T ss_pred CCHHHHHHHHHHHHHHHCCCCC
T ss_conf 8999999999999998621535