HHsearch alignment of GI: 254781108 and MMDB domain: 2nvo_A_53-64_359-535
>2nvo_A (A:53-64,A:359-535) RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.23 E-value=4.1e-10 Score=78.65 Aligned_cols=175 Identities=12% Similarity=-0.011 Sum_probs=110.5
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 45565431357505566666676663101233102301268876540310134322011255533341000245665541
Q gi|254781108|r 143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN 222 (398)
Q Consensus 143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 222 (398)
....+.++++++|.||||........ +....+.+...+..
T Consensus 12 ~~~~~~~iv~vlD~SgSM~~~~~~~~----------------------------------------k~~~~~~~a~~~~~ 51 (189)
T 2nvo_A 12 HQPANTRHLLALDVSGSMTCGDVAGV----------------------------------------PGLTPNMAAAAMSL 51 (189)
T ss_dssp CCCCCSEEEEEECCSGGGGSCCGGGC----------------------------------------TTCCHHHHHHHHHH
T ss_pred HCCCCCCEEEEEECHHHCCCCCCCCC----------------------------------------CHHHHHHHHHHHHH
T ss_conf 78878717999977342046400587----------------------------------------31879999999999
Q ss_pred HHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 02202768776521346541267765431123568999999997357788874458899999996113466666566766
Q gi|254781108|r 223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398)
.... ...+.+.+.|+.... ...+++.+.......+..+.+.|+|++..||..+.+.+..
T Consensus 52 ~~~~-------~~~~v~li~F~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~T~~~~al~~a~~~~~~------------ 110 (189)
T 2nvo_A 52 IALR-------TEPDALTMGFAEQFR--PLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQERLD------------ 110 (189)
T ss_dssp HHHH-------HSSEEEEEEEBSSEE--ECCCCTTCCHHHHHHHTCCSSBCCCCTTHHHHHHHHTTCC------------
T ss_pred HHHC-------CCCCCEEEEECCCCE--ECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC------------
T ss_conf 9807-------589817998789517--7588887329999999854578985699999999846455------------
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
Q ss_conf 66516998158877877777663148999999997898899999547975589999985199818994698999999999
Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDK 382 (398)
Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~ 382 (398)
++.++++|||+.+.+.. ...........+++.+|.+|+|+++...... +.. ...+.++.+..... .|+.
T Consensus 111 --~~~vilitDg~~~~~~~--~~~~~~~~~~~~~~~~i~i~~i~~~~~~~~~--~~~--~~~~~~~~~~~~~~---~~~~ 179 (189)
T 2nvo_A 111 --VDTFVVYTDNETWAGQV--HPTVALDQYAQKMGRAPKLIVVGLTATEFSI--ADP--QRRDMLDVVGFDAA---APNV 179 (189)
T ss_dssp --CSEEEEEESSCCCCCSS--CHHHHHHHHHHHHSCCCEEEEEETTCSCCCC--SCT--TCSSEEEEEECCTT---HHHH
T ss_pred --CCEEEEECCCCCCCCCC--CHHHHHHHHHHHCCCCCEEEEEEECCCCCCC--CCC--CCCCEEEEECCCHH---HHHH
T ss_conf --89899980799778999--9999999999852899759999803888887--888--99994787268889---9999
Q ss_pred HHHHHHH
Q ss_conf 9998751
Q gi|254781108|r 383 ITDKIQE 389 (398)
Q Consensus 383 I~~~i~~ 389 (398)
|++....
T Consensus 180 i~~~~~g 186 (189)
T 2nvo_A 180 MTAFARG 186 (189)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
T ss_conf 9998668