HHsearch alignment of GI: 254781108 and MMDB domain: 2nvo_A_53-64_359-535

>2nvo_A (A:53-64,A:359-535) RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.23  E-value=4.1e-10  Score=78.65  Aligned_cols=175  Identities=12%  Similarity=-0.011  Sum_probs=110.5

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             45565431357505566666676663101233102301268876540310134322011255533341000245665541
Q gi|254781108|r  143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN  222 (398)
Q Consensus       143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  222 (398)
                      ....+.++++++|.||||........                                        +....+.+...+..
T Consensus        12 ~~~~~~~iv~vlD~SgSM~~~~~~~~----------------------------------------k~~~~~~~a~~~~~   51 (189)
T 2nvo_A           12 HQPANTRHLLALDVSGSMTCGDVAGV----------------------------------------PGLTPNMAAAAMSL   51 (189)
T ss_dssp             CCCCCSEEEEEECCSGGGGSCCGGGC----------------------------------------TTCCHHHHHHHHHH
T ss_pred             HCCCCCCEEEEEECHHHCCCCCCCCC----------------------------------------CHHHHHHHHHHHHH
T ss_conf             78878717999977342046400587----------------------------------------31879999999999


Q ss_pred             HHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             02202768776521346541267765431123568999999997357788874458899999996113466666566766
Q gi|254781108|r  223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGST  302 (398)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~  302 (398)
                      ....       ...+.+.+.|+....  ...+++.+.......+..+.+.|+|++..||..+.+.+..            
T Consensus        52 ~~~~-------~~~~v~li~F~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~T~~~~al~~a~~~~~~------------  110 (189)
T 2nvo_A           52 IALR-------TEPDALTMGFAEQFR--PLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQERLD------------  110 (189)
T ss_dssp             HHHH-------HSSEEEEEEEBSSEE--ECCCCTTCCHHHHHHHTCCSSBCCCCTTHHHHHHHHTTCC------------
T ss_pred             HHHC-------CCCCCEEEEECCCCE--ECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC------------
T ss_conf             9807-------589817998789517--7588887329999999854578985699999999846455------------


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
Q ss_conf             66516998158877877777663148999999997898899999547975589999985199818994698999999999
Q gi|254781108|r  303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDK  382 (398)
Q Consensus       303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~  382 (398)
                        ++.++++|||+.+.+..  ...........+++.+|.+|+|+++......  +..  ...+.++.+.....   .|+.
T Consensus       111 --~~~vilitDg~~~~~~~--~~~~~~~~~~~~~~~~i~i~~i~~~~~~~~~--~~~--~~~~~~~~~~~~~~---~~~~  179 (189)
T 2nvo_A          111 --VDTFVVYTDNETWAGQV--HPTVALDQYAQKMGRAPKLIVVGLTATEFSI--ADP--QRRDMLDVVGFDAA---APNV  179 (189)
T ss_dssp             --CSEEEEEESSCCCCCSS--CHHHHHHHHHHHHSCCCEEEEEETTCSCCCC--SCT--TCSSEEEEEECCTT---HHHH
T ss_pred             --CCEEEEECCCCCCCCCC--CHHHHHHHHHHHCCCCCEEEEEEECCCCCCC--CCC--CCCCEEEEECCCHH---HHHH
T ss_conf             --89899980799778999--9999999999852899759999803888887--888--99994787268889---9999


Q ss_pred             HHHHHHH
Q ss_conf             9998751
Q gi|254781108|r  383 ITDKIQE  389 (398)
Q Consensus       383 I~~~i~~  389 (398)
                      |++....
T Consensus       180 i~~~~~g  186 (189)
T 2nvo_A          180 MTAFARG  186 (189)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHCC
T ss_conf             9998668