HHsearch results for GI: 254781108 and protein with PDBid: 1jey_B
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.97 E-value=0.00052 Score=41.16 Aligned_cols=147 Identities=11% Similarity=0.081 Sum_probs=87.9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
--+++++|+|+||...... ..++.+..+.++..++...--.
T Consensus 8 eaiv~~iDvs~sM~~~~~~---------------------------------------~~s~~~~a~~~~~~~~~~ki~~ 48 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPG---------------------------------------IESPFEQAKKVITMFVQRQVFA 48 (565)
T ss_dssp EEEEEEEECCGGGGCCBTT---------------------------------------BCCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEECCHHHCCCCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 5199999898677676889---------------------------------------9997999999999999987338
Q ss_pred CCCCCCCCEEEEEEECCCCCCC------------CCCCCCC-CCHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHCCCCC
Q ss_conf 7687765213465412677654------------3112356-8999999997357788-874458899999996113466
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVG------------NQCTPLS-NNLNEVKSRLNKLNPY-ENTNTYPAMHHAYRELYNEKE 293 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~lt-~~~~~~~~~I~~l~~~-G~T~~~~gl~~a~~~l~~~~~ 293 (398)
. + ....+.+.|+..... ....++. -+...++...+.+.++ +.++...+|.++..+|.....
T Consensus 49 ~--~---~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l~~~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~~ 123 (565)
T 1jey_B 49 E--N---KDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETI 123 (565)
T ss_dssp T--C---CCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSS
T ss_pred C--C---CCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9--9---9879999980578887555445777559974588999999999986536887787879999999999998750
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 66656676666516998158877877777663148999999997898899999547
Q gi|254781108|r 294 SSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 294 ~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~ 349 (398)
..+..++.|||+|||+.+.. ......+.+.+++.||.+..|++..
T Consensus 124 ------~~k~~~~~Ivl~Td~~~p~~-----~~~~~~i~~~l~~~~i~L~vi~~~~ 168 (565)
T 1jey_B 124 ------GKKFEKRHIEIFTDLSSRFS-----KSQLDIIIHSLKKCDISLQFFLPFS 168 (565)
T ss_dssp ------SSCCSEEEEEEECCCCSCCC-----CTTHHHHHHHHHHTTEEEEEEESSC
T ss_pred ------CCCCCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf ------25556248999927998868-----7899999999986596699970366