HHsearch results for GI: 254781108 and protein with PDBid: 1jey_B

>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.97  E-value=0.00052  Score=41.16  Aligned_cols=147  Identities=11%  Similarity=0.081  Sum_probs=87.9

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r  148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA  227 (398)
Q Consensus       148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  227 (398)
                      --+++++|+|+||......                                       ..++.+..+.++..++...--.
T Consensus         8 eaiv~~iDvs~sM~~~~~~---------------------------------------~~s~~~~a~~~~~~~~~~ki~~   48 (565)
T 1jey_B            8 AAVVLCMDVGFTMSNSIPG---------------------------------------IESPFEQAKKVITMFVQRQVFA   48 (565)
T ss_dssp             EEEEEEEECCGGGGCCBTT---------------------------------------BCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEECCHHHCCCCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHCC
T ss_conf             5199999898677676889---------------------------------------9997999999999999987338


Q ss_pred             CCCCCCCCEEEEEEECCCCCCC------------CCCCCCC-CCHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHCCCCC
Q ss_conf             7687765213465412677654------------3112356-8999999997357788-874458899999996113466
Q gi|254781108|r  228 IQEKKNLSVRIGTIAYNIGIVG------------NQCTPLS-NNLNEVKSRLNKLNPY-ENTNTYPAMHHAYRELYNEKE  293 (398)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~lt-~~~~~~~~~I~~l~~~-G~T~~~~gl~~a~~~l~~~~~  293 (398)
                      .  +   ....+.+.|+.....            ....++. -+...++...+.+.++ +.++...+|.++..+|.....
T Consensus        49 ~--~---~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l~~~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~~  123 (565)
T 1jey_B           49 E--N---KDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETI  123 (565)
T ss_dssp             T--C---CCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSS
T ss_pred             C--C---CCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9--9---9879999980578887555445777559974588999999999986536887787879999999999998750


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             66656676666516998158877877777663148999999997898899999547
Q gi|254781108|r  294 SSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSA  349 (398)
Q Consensus       294 ~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~  349 (398)
                            ..+..++.|||+|||+.+..     ......+.+.+++.||.+..|++..
T Consensus       124 ------~~k~~~~~Ivl~Td~~~p~~-----~~~~~~i~~~l~~~~i~L~vi~~~~  168 (565)
T 1jey_B          124 ------GKKFEKRHIEIFTDLSSRFS-----KSQLDIIIHSLKKCDISLQFFLPFS  168 (565)
T ss_dssp             ------SSCCSEEEEEEECCCCSCCC-----CTTHHHHHHHHHHTTEEEEEEESSC
T ss_pred             ------CCCCCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             ------25556248999927998868-----7899999999986596699970366