HHsearch results for GI: 254781108 and protein with PDBid: 1mf7_A
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.67 E-value=2.1e-16 Score=115.51 Aligned_cols=180 Identities=18% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|+++++|.|+||.... ....+..+..++..+.
T Consensus 4 ~~~DivfvlD~S~s~~~~~---------------------------------------------f~~~k~~i~~~i~~l~ 38 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHD---------------------------------------------FRRMKEFVSTVMEQLK 38 (194)
T ss_dssp CCEEEEEEEECCTTSCHHH---------------------------------------------HHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCC
T ss_conf 8717999995989988799---------------------------------------------9999999999999719
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 0276877652134654126776543112356--899999999735778-8874458899999996113466666566766
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLS--NNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398)
+ ..+|.+.+.|....... .+|+ .+...+..+|+.+.. +|+|+++.+|.++.+.+....... ..
T Consensus 39 -----~--~~~rvgvv~f~~~~~~~--~~l~~~~~~~~~~~~i~~l~~~~g~t~~~~al~~a~~~~~~~~~~~-----~~ 104 (194)
T 1mf7_A 39 -----K--SKTLFSLMQYSEEFRIH--FTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGA-----RK 104 (194)
T ss_dssp -----C--TTEEEEEEEESSSEEEE--ECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTC-----CT
T ss_pred -----C--CCCEEEEEEEEEEEEEE--ECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-----CC
T ss_conf -----8--88089999965403775--1146636689999876413423698669999999999874143267-----67
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCCC--CEEEECCHHHHH
Q ss_conf 665169981588778777776631489999999978988999995479---755899999851998--189946989999
Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSSG--QFFAVNDSRELL 377 (398)
Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~~--~yy~a~~~~~L~ 377 (398)
+.+|++||+|||+.+... .....+...+|..||+||+||++.. ......|+.+|+.|+ ++|.+++.++|.
T Consensus 105 ~~~kvvvl~tDG~~~~~~-----~~~~~~~~~l~~~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~ 179 (194)
T 1mf7_A 105 NAFKILVVITDGEKFGDP-----LGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALK 179 (194)
T ss_dssp TSEEEEEEEESSCCBSCS-----SCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGG
T ss_pred CCCEEEEEEECCCCCCCH-----HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf 766499999478878980-----449999999997799999999788766634699999986699866089949999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998751
Q gi|254781108|r 378 ESFDKITDKIQE 389 (398)
Q Consensus 378 ~aF~~I~~~i~~ 389 (398)
+.+++|.++|.-
T Consensus 180 ~~~~~l~~~i~~ 191 (194)
T 1mf7_A 180 TIQNQLREKIFC 191 (194)
T ss_dssp GGHHHHHHHHHT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999876414