HHsearch results for GI: 254781108 and protein with PDBid: 1mjn_A
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.48 E-value=2.5e-14 Score=103.01 Aligned_cols=173 Identities=15% Similarity=0.208 Sum_probs=121.7
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
+++|+++++|.|+||... +....+..+..+++.+.
T Consensus 1 g~~DivfllD~S~Sm~~~---------------------------------------------~f~~~k~~~~~~i~~l~ 35 (179)
T 1mjn_A 1 GNVDLVFLFDGSMSLQPD---------------------------------------------EFQKILDFMKDVMKKCS 35 (179)
T ss_dssp CCEEEEEEEECBTTCCHH---------------------------------------------HHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHHC
T ss_conf 976999999688999879---------------------------------------------99999999999999737
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 027687765213465412677654311235689999999973577-8887445889999999611346666656676666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~-~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
. ...+.....|..............+...+...++.+. .+|+|++..++.++...++....... +..
T Consensus 36 ~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~al~~a~~~~~~~~~~~r-----~~~ 103 (179)
T 1mjn_A 36 N-------TSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGAR-----PDA 103 (179)
T ss_dssp T-------SSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCC-----TTS
T ss_pred C-------CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCC
T ss_conf 5-------7766999998602111135212046999999875125578983278899999999854530689-----987
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCC--CCEEEECCHHHHHHH
Q ss_conf 5169981588778777776631489999999978988999995479---75589999985199--818994698999999
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSS--GQFFAVNDSRELLES 379 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~--~~yy~a~~~~~L~~a 379 (398)
+|++||+|||+.+.... .++..++.++.++++.. ......|+.+|+.| .|+|.+++.++|.+.
T Consensus 104 ~k~ivllTDG~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~ 171 (179)
T 1mjn_A 104 TKVLIIITDGEATDSGN------------IDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDL 171 (179)
T ss_dssp EEEEEEEESSCCSSCSC------------CGGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCH
T ss_pred CEEEEEECCCCCCCCHH------------HHHHHCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHH
T ss_conf 14899980799886068------------999829868899999468860179999998579986339987999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999987
Q gi|254781108|r 380 FDKITDKI 387 (398)
Q Consensus 380 F~~I~~~i 387 (398)
+++|.++|
T Consensus 172 ~~~l~~~I 179 (179)
T 1mjn_A 172 CTELQKKI 179 (179)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
T ss_conf 99997249