HHsearch results for GI: 254781108 and protein with PDBid: 1pt6_A

>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.76  E-value=2e-17  Score=121.64  Aligned_cols=182  Identities=18%  Similarity=0.255  Sum_probs=132.5

Q ss_pred             CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r  146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ  225 (398)
Q Consensus       146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  225 (398)
                      .++|++|++|.|+||..   +                                            +..+..+..++..+.
T Consensus         6 ~~~DivfvlD~S~S~~~---f--------------------------------------------~~~k~f~~~~i~~~~   38 (213)
T 1pt6_A            6 TQLDIVIVLDGSNSIYP---W--------------------------------------------DSVTAFLNDLLKRMD   38 (213)
T ss_dssp             -CEEEEEEEECCTTCCC---H--------------------------------------------HHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHHC
T ss_conf             84489999979888878---8--------------------------------------------999999999999724


Q ss_pred             HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             027687765213465412677654311235689999999973577888--744588999999961134666665667666
Q gi|254781108|r  226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE--NTNTYPAMHHAYRELYNEKESSHNTIGSTR  303 (398)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G--~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~  303 (398)
                      .     .....|.+.+.|..............+...+..+|+.+.+.|  +|+++.+|.++.+.+.....+.+     ++
T Consensus        39 ~-----~~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~g~R-----~~  108 (213)
T 1pt6_A           39 I-----GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGAR-----RG  108 (213)
T ss_dssp             B-----STTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCC-----TT
T ss_pred             C-----CCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC-----CC
T ss_conf             4-----8877378899974236899776556779999999877775078410021234344432013224787-----78


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCCC--CEEEECCH
Q ss_conf             6516998158877877777663148999999997898899999547975--------5899999851998--18994698
Q gi|254781108|r  304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE--------GQDLLRKCTDSSG--QFFAVNDS  373 (398)
Q Consensus       304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~--------~~~~l~~cAs~~~--~yy~a~~~  373 (398)
                      .+|++||+|||..+.      ........+.+|++||+||+||+|...+        ..+.|+.+|+.|+  |+|.+++.
T Consensus       109 ~~k~villTDG~~~d------~~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~  182 (213)
T 1pt6_A          109 VKKVMVIVTDGESHD------NHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE  182 (213)
T ss_dssp             CEEEEEEEESSCCSC------SHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred             CEEEEEEEECCCCCC------CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCH
T ss_conf             668999984698788------41599999999988999999997476554543332469999998669985408980899


Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999987512
Q gi|254781108|r  374 RELLESFDKITDKIQEQ  390 (398)
Q Consensus       374 ~~L~~aF~~I~~~i~~~  390 (398)
                      ++|.+++++|.++|...
T Consensus       183 ~~L~~i~~~l~~~ic~~  199 (213)
T 1pt6_A          183 LALVTIVKTLGERIFAL  199 (213)
T ss_dssp             GGGGGGHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999997246