HHsearch results for GI: 254781108 and protein with PDBid: 1yvr_A
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.77 E-value=0.0015 Score=38.35 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=47.0
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999735778887445889999999611346666656676666516998158877877777663148999999997
Q gi|254781108|r 258 NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRN 337 (398)
Q Consensus 258 ~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~ 337 (398)
....+...+..+ ++|||+++.+|.|+.+.-. ...++|++|||+++.+.... ......-.+-.+
T Consensus 429 ~l~~~~~~~~~~-~~ggT~~~~~i~~a~~~~~--------------~~D~~IvlTD~e~~~g~~~p--~~al~~Yr~k~~ 491 (538)
T 1yvr_A 429 LLHEVVEKMSDI-TMGSTDCALPMLWAQKTNT--------------AADIFIVFTDCETNVEDVHP--ATALKQYREKMG 491 (538)
T ss_dssp CHHHHHHHHTTC-CCSCCCTTHHHHHHHHTTC--------------CCSEEEEEECCCCCSSSCCH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-CCCCCCHHHHHHHHHHCCC--------------CCCEEEEEECCCCCCCCCCH--HHHHHHHHHHHC
T ss_conf 499999998436-7898618999999996155--------------68989998179977898899--999999999848
Q ss_pred CCCEEEEEEECC
Q ss_conf 898899999547
Q gi|254781108|r 338 AGMKIYSVAVSA 349 (398)
Q Consensus 338 ~gi~IytIg~~~ 349 (398)
.+.+++.|++..
T Consensus 492 ~~ak~v~v~l~~ 503 (538)
T 1yvr_A 492 IPAKLIVCAMTS 503 (538)
T ss_dssp CCCEEEEEECSS
T ss_pred CCCEEEEEECCC
T ss_conf 997599998568