HHsearch results for GI: 254781108 and protein with PDBid: 1yvr_A

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.77  E-value=0.0015  Score=38.35  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999735778887445889999999611346666656676666516998158877877777663148999999997
Q gi|254781108|r  258 NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRN  337 (398)
Q Consensus       258 ~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~  337 (398)
                      ....+...+..+ ++|||+++.+|.|+.+.-.              ...++|++|||+++.+....  ......-.+-.+
T Consensus       429 ~l~~~~~~~~~~-~~ggT~~~~~i~~a~~~~~--------------~~D~~IvlTD~e~~~g~~~p--~~al~~Yr~k~~  491 (538)
T 1yvr_A          429 LLHEVVEKMSDI-TMGSTDCALPMLWAQKTNT--------------AADIFIVFTDCETNVEDVHP--ATALKQYREKMG  491 (538)
T ss_dssp             CHHHHHHHHTTC-CCSCCCTTHHHHHHHHTTC--------------CCSEEEEEECCCCCSSSCCH--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCC-CCCCCCHHHHHHHHHHCCC--------------CCCEEEEEECCCCCCCCCCH--HHHHHHHHHHHC
T ss_conf             499999998436-7898618999999996155--------------68989998179977898899--999999999848


Q ss_pred             CCCEEEEEEECC
Q ss_conf             898899999547
Q gi|254781108|r  338 AGMKIYSVAVSA  349 (398)
Q Consensus       338 ~gi~IytIg~~~  349 (398)
                      .+.+++.|++..
T Consensus       492 ~~ak~v~v~l~~  503 (538)
T 1yvr_A          492 IPAKLIVCAMTS  503 (538)
T ss_dssp             CCCEEEEEECSS
T ss_pred             CCCEEEEEECCC
T ss_conf             997599998568