HHsearch results for GI: 254781108 and protein with PDBid: 2b2x_A
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.73 E-value=1e-16 Score=117.38 Aligned_cols=184 Identities=18% Similarity=0.280 Sum_probs=133.4
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|+++++|.|+||.. + ...+..+..++..+.
T Consensus 21 ~~~DivfvlD~S~sv~~---~--------------------------------------------~~~k~fv~~li~~~~ 53 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYP---W--------------------------------------------ESVIAFLNDLLKRMD 53 (223)
T ss_dssp -CEEEEEEEECSTTCCC---H--------------------------------------------HHHHHHHHHHHTTSC
T ss_pred CCEEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHCC
T ss_conf 86569999979887436---9--------------------------------------------999999999999715
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 02768776521346541267765431123568999999997357788--8744588999999961134666665667666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPY--ENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~--G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
- .....+.+.+.|..............++..+...|+.+.+. ++|+++.+|.++.+.+.....+.+ ++
T Consensus 54 i-----~~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~~~i~~i~~~~~~~t~~~~aL~~~~~~~~~~~~g~R-----~~ 123 (223)
T 2b2x_A 54 I-----GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEARGAR-----RG 123 (223)
T ss_dssp C-----STTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCC-----TT
T ss_pred C-----CCCCCEEEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC-----CC
T ss_conf 5-----8886089899860426786054555768999999874312477332217778888887503335888-----78
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCH--------HHHHHHHHCCC--CCEEEECCH
Q ss_conf 65169981588778777776631489999999978988999995479755--------89999985199--818994698
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEG--------QDLLRKCTDSS--GQFFAVNDS 373 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~--------~~~l~~cAs~~--~~yy~a~~~ 373 (398)
..|++||+|||..+. ..........+|+.||+||+||+|.+.+. .+.|+.+|+.| .|+|.+++.
T Consensus 124 ~~kvlillTDG~~~d------~~~~~~~a~~lk~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~ 197 (223)
T 2b2x_A 124 VKKVMVIVTDGESHD------NYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE 197 (223)
T ss_dssp SEEEEEEEESSCCTT------GGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESST
T ss_pred CCEEEEEEECCCCCC------CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCH
T ss_conf 725799982698788------31299999999875998999998466664432442369999998669985518981899
Q ss_pred HHHHHHHHHHHHHHHHCEE
Q ss_conf 9999999999998751245
Q gi|254781108|r 374 RELLESFDKITDKIQEQSV 392 (398)
Q Consensus 374 ~~L~~aF~~I~~~i~~~r~ 392 (398)
++|.+++++|.++|.....
T Consensus 198 ~~L~~i~~~l~~~ic~~e~ 216 (223)
T 2b2x_A 198 LALVTIVKALGERIFALEA 216 (223)
T ss_dssp TGGGGGHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999988643103