HHsearch results for GI: 254781108 and protein with PDBid: 2vdr_B
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=98.46 E-value=8.6e-06 Score=51.83 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCEEEEECCCCCC-------------
Q ss_conf 11235689999999973577888744588999999-9611346666656676666516998158877-------------
Q gi|254781108|r 251 QCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAY-RELYNEKESSHNTIGSTRLKKFVIFITDGEN------------- 316 (398)
Q Consensus 251 ~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~-~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------- 316 (398)
...+||.+...+..+|+.+.+.||-...++..-|. +.+.-.+.-.|. .+.+|++||+||.-.
T Consensus 192 ~~l~lT~d~~~F~~~V~~~~~sGggD~PE~~~dAL~qa~vc~~~igWR----~~a~rilvliTDA~~H~agDgkl~giv~ 267 (461)
T 2vdr_B 192 HVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWR----NDASHLLVFTTDAKTHIALDGRLAGIVQ 267 (461)
T ss_dssp EEEEEESCHHHHHHHHHTCCCCCCSBSSBCHHHHHHHHHHCHHHHTCC----TTSEEEEEEEESSCBCCTTGGGGGTCCS
T ss_pred EECCCCCCHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEECCCCCCCCCCCCCCEEEC
T ss_conf 524688789999998750365479867766899999999863107878----6875999998978843368754410443
Q ss_pred -CCCCCCC-----------CCH-HHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHHHCC-CCCEE--EECCHHHHHHH
Q ss_conf -8777776-----------631-48999999997898-89999954797558999998519-98189--94698999999
Q gi|254781108|r 317 -SGASAYQ-----------NTL-NTLQICEYMRNAGM-KIYSVAVSAPPEGQDLLRKCTDS-SGQFF--AVNDSRELLES 379 (398)
Q Consensus 317 -~~~~~~~-----------~~~-~~~~~c~~~K~~gi-~IytIg~~~~~~~~~~l~~cAs~-~~~yy--~a~~~~~L~~a 379 (398)
|.+..+. ..+ ....+.+.+++++| .||.|.- ....+.+..+.- |+... -..+++.+.+.
T Consensus 268 pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~----~~~~~Y~~L~~~i~~s~vg~L~~dSsNiv~L 343 (461)
T 2vdr_B 268 PNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTE----NVVNLYQNYSELIPGTTVGVLSMDSSNVLQL 343 (461)
T ss_dssp CCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEG----GGHHHHHHHHTTSTTCEEEEESSCCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 887631537988766555577899999999998649679999655----3222689999746875367744773769999
Q ss_pred HHHHHHHHHHCEE
Q ss_conf 9999998751245
Q gi|254781108|r 380 FDKITDKIQEQSV 392 (398)
Q Consensus 380 F~~I~~~i~~~r~ 392 (398)
.++-.++|.+...
T Consensus 344 I~~aY~~i~s~v~ 356 (461)
T 2vdr_B 344 IVDAYGKIRSKVE 356 (461)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHHHHHCEEE
T ss_conf 9999987630799