Query gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 398
No_of_seqs 141 out of 1170
Neff 10.5
Searched_HMMs 23785
Date Wed Jun 1 01:49:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781108.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2odp_A Complement C2; C3/C5 co 99.8 1.4E-19 5.9E-24 134.6 15.2 190 144-385 6-211 (509)
2 1v7p_C Integrin alpha-2; snake 99.8 5.2E-18 2.2E-22 125.2 17.0 183 145-390 4-198 (200)
3 1rrk_A Complement factor B; BB 99.8 2.5E-18 1E-22 127.1 13.7 185 148-387 2-205 (497)
4 1q0p_A Complement factor B; VO 99.8 1.3E-18 5.3E-23 128.9 11.8 191 145-390 13-222 (223)
5 1shu_X Anthrax toxin receptor 99.8 2E-17 8.5E-22 121.6 14.7 174 146-388 5-182 (182)
6 1pt6_A Integrin alpha-1; X-RAY 99.8 2E-17 8.4E-22 121.6 14.6 182 146-390 6-199 (213)
7 3hrz_D Complement factor B; se 99.7 2.5E-17 1.1E-21 121.0 13.3 174 212-393 263-453 (741)
8 2b2x_A Integrin alpha-1; compu 99.7 1E-16 4.3E-21 117.4 13.6 184 146-392 21-216 (223)
9 1atz_A VON willebrand factor; 99.7 6.9E-16 2.9E-20 112.4 15.1 177 146-387 4-183 (189)
10 1n3y_A Integrin alpha-X; alpha 99.7 1.5E-16 6.3E-21 116.4 10.2 183 144-390 6-196 (198)
11 3gxb_A VON willebrand factor; 99.7 2.1E-15 8.9E-20 109.5 16.0 172 147-388 2-175 (184)
12 3ibs_A Conserved hypothetical 99.7 2.9E-15 1.2E-19 108.7 16.4 175 146-388 10-213 (218)
13 1mf7_A Integrin alpha M; cell 99.7 2.1E-16 8.8E-21 115.5 9.0 180 146-389 4-191 (194)
14 1ijb_A VON willebrand factor; 99.7 1.4E-14 5.9E-19 104.6 17.8 183 146-390 12-198 (202)
15 2x5n_A SPRPN10, 26S proteasome 99.6 6.6E-14 2.8E-18 100.5 16.2 154 148-361 3-156 (192)
16 1mjn_A Integrin alpha-L; rossm 99.5 2.5E-14 1.1E-18 103.0 5.6 173 146-387 1-179 (179)
17 2xgg_A Microneme protein 2; A/ 99.4 8.7E-12 3.7E-16 87.8 11.9 154 146-361 16-172 (178)
18 2x31_A Magnesium-chelatase 60 99.3 3.2E-14 1.4E-18 102.4 -3.0 175 145-382 3-185 (189)
19 2iue_A Pactolus I-domain; memb 99.2 1.1E-09 4.5E-14 75.3 15.3 162 146-370 2-193 (212)
20 3k6s_A Integrin alpha-X; cell 99.1 1.5E-11 6.5E-16 86.3 3.5 149 235-393 166-320 (1095)
21 3fcs_B Integrin beta-3; beta p 98.6 1.7E-06 7E-11 56.1 12.9 135 250-392 191-356 (690)
22 2vdr_B Integrin beta-3; cell a 98.5 8.6E-06 3.6E-10 51.8 14.0 134 251-392 192-356 (461)
23 2nvo_A RO sixty-related protei 98.2 4.7E-05 2E-09 47.4 12.5 94 237-350 405-500 (535)
24 1jey_B KU80; double-strand DNA 98.0 0.00052 2.2E-08 41.2 14.5 147 148-349 8-168 (565)
25 1yvr_A RO autoantigen, 60-kDa 97.8 0.0015 6.4E-08 38.3 14.0 75 258-349 429-503 (538)
26 3k6s_B Integrin beta-2; cell r 97.7 0.00018 7.5E-09 43.9 8.6 131 250-389 183-343 (687)
27 1jey_A KU70; double-strand DNA 83.1 1.8 7.5E-05 19.9 12.4 70 273-350 139-208 (609)
28 3gk3_A Acetoacetyl-COA reducta 49.2 9.9 0.00042 15.5 7.4 22 328-349 186-207 (269)
29 1gee_A Glucose 1-dehydrogenase 44.5 12 0.00049 15.0 7.8 21 329-349 170-190 (261)
30 3afn_B A1-R, 4-deoxy-L-erythro 36.5 16 0.00066 14.3 9.3 20 330-349 177-196 (258)
31 2ehd_A Oxidoreductase, oxidore 36.4 16 0.00066 14.3 6.2 52 328-385 161-212 (234)
32 3efo_B SEC24 related gene fami 36.3 16 0.00066 14.3 13.7 111 252-372 264-401 (770)
33 2v76_A Docking protein 1; alte 33.2 18 0.00075 13.9 2.0 33 358-393 73-106 (107)
34 2hq1_A Glucose/ribitol dehydro 31.7 19 0.00079 13.8 9.2 22 328-349 166-187 (247)
35 3imf_A Short chain dehydrogena 31.6 19 0.00079 13.8 7.8 19 330-348 169-188 (257)
36 2bgk_A Rhizome secoisolaricire 31.1 19 0.00081 13.7 7.5 20 329-348 179-198 (278)
37 1kjn_A MTH0777; hypotethical p 29.5 21 0.00086 13.6 5.7 48 338-385 102-154 (157)
38 3eh2_A Protein transport prote 29.4 21 0.00087 13.6 13.4 126 252-387 260-415 (766)
39 3is3_A 17BETA-hydroxysteroid d 29.3 21 0.00087 13.5 7.9 22 328-349 178-199 (270)
40 3ezl_A Acetoacetyl-COA reducta 26.9 23 0.00096 13.3 9.0 22 328-349 174-195 (256)
41 1g0o_A Trihydroxynaphthalene r 26.8 23 0.00097 13.3 7.9 22 328-349 189-210 (283)
42 3h7a_A Short chain dehydrogena 23.7 26 0.0011 12.9 8.1 57 329-386 167-229 (252)
43 3ijr_A Oxidoreductase, short c 22.3 28 0.0012 12.8 8.7 22 328-349 207-228 (291)
44 2cfc_A 2-(R)-hydroxypropyl-COM 22.2 28 0.0012 12.7 6.6 22 328-349 166-187 (250)
45 1geg_A Acetoin reductase; SDR 21.6 29 0.0012 12.7 7.4 22 328-349 163-184 (256)
46 3osu_A 3-oxoacyl-[acyl-carrier 21.4 29 0.0012 12.7 6.6 54 329-384 166-226 (246)
47 1x1t_A D(-)-3-hydroxybutyrate 21.4 29 0.0012 12.7 4.9 21 329-349 167-187 (260)
48 1p5t_A DOK1, docking protein 1 21.3 24 0.00099 13.2 0.8 31 359-392 76-107 (127)
49 1edo_A Beta-keto acyl carrier 20.9 30 0.0013 12.6 7.1 22 328-349 162-183 (244)
50 1fmc_A 7 alpha-hydroxysteroid 20.1 31 0.0013 12.5 7.6 21 329-349 171-191 (255)
No 1
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.83 E-value=1.4e-19 Score=134.57 Aligned_cols=190 Identities=22% Similarity=0.297 Sum_probs=132.4
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410
Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398)
Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398)
..+.+|+++|||.|+||... +....+.++..+++.
T Consensus 6 ~~g~~DivfvlD~SgSm~~~---------------------------------------------~~~~~k~~~~~~i~~ 40 (509)
T 2odp_A 6 RSGHLNLYLLLDASQSVSEN---------------------------------------------DFLIFKESASLMVDR 40 (509)
T ss_dssp SSSEEEEEEEEECSTTSCHH---------------------------------------------HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHH
T ss_conf 78986599999786999989---------------------------------------------999999999999996
Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCC--CCCCCCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHCCCCCCC-
Q ss_conf 2202768776521346541267765431--1235689999999973577-----8887445889999999611346666-
Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQ--CTPLSNNLNEVKSRLNKLN-----PYENTNTYPAMHHAYRELYNEKESS- 295 (398)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~~I~~l~-----~~G~T~~~~gl~~a~~~l~~~~~~~- 295 (398)
+...+ ...+.+.+.|+....... ....+.+...+..+|+.+. ++|+|++..||..+++.+.......
T Consensus 41 ~~~~~-----~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~~ 115 (509)
T 2odp_A 41 IFSFE-----INVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLG 115 (509)
T ss_dssp HHTTC-----CCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCC-----CCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 14489-----9748999998883579971788875579999999971734567789977799999999999998764302
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH-----HHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC---CE
Q ss_conf 6566766665169981588778777776631489999-----999978988999995479755899999851998---18
Q gi|254781108|r 296 HNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQIC-----EYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG---QF 367 (398)
Q Consensus 296 ~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c-----~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~---~y 367 (398)
......++.+|+|||||||+.|.+....... ..+. ..+++.||.||+||+|....+.+.|+.+|+.|+ |+
T Consensus 116 ~~~~~~~~~~~~iillTDG~~n~g~~~~~~~--~~~~~~~~~~~~~~~~v~i~~igvG~~~~d~~~L~~ias~~~~~~h~ 193 (509)
T 2odp_A 116 METMAWQEIRHAIILLTDGKSNMGGSPKTAV--DHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHA 193 (509)
T ss_dssp TTSHHHHTEEEEEEEESCSCCCSSSCTHHHH--HHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHH--HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEE
T ss_conf 3556667886299999488756699848999--99876666656630696599999588645899999986599997159
Q ss_pred EEECCHHHHHHHHHHHHH
Q ss_conf 994698999999999999
Q gi|254781108|r 368 FAVNDSRELLESFDKITD 385 (398)
Q Consensus 368 y~a~~~~~L~~aF~~I~~ 385 (398)
|.+.+.++|.++|++|-+
T Consensus 194 f~~~~~~~L~~~~~~i~~ 211 (509)
T 2odp_A 194 FILQDTKALHQVFEHMLD 211 (509)
T ss_dssp EEESSHHHHHHHHHHHEE
T ss_pred EEECCHHHHHHHHHHCCC
T ss_conf 994888899999974044
No 2
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.80 E-value=5.2e-18 Score=125.16 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=133.7
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102
Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398)
Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398)
+..+|+++|+|.|+||.. + +..|..+..++..+
T Consensus 4 p~~~DivfvlD~S~S~~~---~--------------------------------------------~~~k~f~~~~i~~~ 36 (200)
T 1v7p_C 4 PSLIDVVVVCDESNSIYP---W--------------------------------------------DAVKNFLEKFVQGL 36 (200)
T ss_dssp --CEEEEEEEECCTTCCC---H--------------------------------------------HHHHHHHHHHHHTS
T ss_pred CCCEEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHH
T ss_conf 871669999979898867---9--------------------------------------------99999999999971
Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 20276877652134654126776543112356899999999735778--8874458899999996113466666566766
Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP--YENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~--~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398)
... ...+|.+.+.|+..........-..+...+..+|+.+.+ +|+|+++.+|.++.+.++....... +
T Consensus 37 ~i~-----~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~i~~~~g~~t~~~~AL~~a~~~~f~~~~~~r-----~ 106 (200)
T 1v7p_C 37 DIG-----PTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGR-----R 106 (200)
T ss_dssp CBS-----TTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGTCC-----T
T ss_pred CCC-----CCCEEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC-----C
T ss_conf 558-----876089999975954674066421158999999876306799964289999999997337355888-----8
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC--------CHHHHHHHHHCCCC--CEEEECC
Q ss_conf 6651699815887787777766314899999999789889999954797--------55899999851998--1899469
Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP--------EGQDLLRKCTDSSG--QFFAVND 372 (398)
Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~--------~~~~~l~~cAs~~~--~yy~a~~ 372 (398)
+.+|++||+|||..+. .......++.+|+.||+||+||++... .....|+.+|+.|. |+|.+++
T Consensus 107 ~~~kvivllTDG~~~d------~~~~~~~~~~~~~~gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d 180 (200)
T 1v7p_C 107 SATKVMVVVTDGESHD------GSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSD 180 (200)
T ss_dssp TSEEEEEEEESSCCSC------GGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESS
T ss_pred CCCEEEEEEECCCCCC------CCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf 8855599982798888------6113999998764890999999777445565443125999999866998613999389
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999987512
Q gi|254781108|r 373 SRELLESFDKITDKIQEQ 390 (398)
Q Consensus 373 ~~~L~~aF~~I~~~i~~~ 390 (398)
.++|.+++++|.++|.+.
T Consensus 181 ~~~L~~~~~~l~~~ic~i 198 (200)
T 1v7p_C 181 EAALLEKAGTLGEQIFSI 198 (200)
T ss_dssp SGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999772056
No 3
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.79 E-value=2.5e-18 Score=127.08 Aligned_cols=185 Identities=20% Similarity=0.233 Sum_probs=130.4
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
+|+++|||.|+||... +.+..+.++..+++.+...
T Consensus 2 lDivfvlD~S~Sm~~~---------------------------------------------~~~~~k~~~~~~i~~~~~~ 36 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGAS---------------------------------------------NFTGAKKVLVNLIEKVASY 36 (497)
T ss_dssp EEEEEEEECSTTTCHH---------------------------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHCCCC
T ss_conf 4589999577999869---------------------------------------------9999999999999853658
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCC----CCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 76877652134654126776543112356----89999999973577-----8887445889999999611346666656
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLS----NNLNEVKSRLNKLN-----PYENTNTYPAMHHAYRELYNEKESSHNT 298 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt----~~~~~~~~~I~~l~-----~~G~T~~~~gl~~a~~~l~~~~~~~~~~ 298 (398)
. ...|.+.+.|+..... ..+++ .++..++..|+.|. .+|+|++..+|.++.+.+.........
T Consensus 37 ~-----~~~rv~lv~f~~~~~~--~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~- 108 (497)
T 1rrk_A 37 G-----VKPRYGLVTYATYPKI--WVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPE- 108 (497)
T ss_dssp T-----CCCEEEEEEESSSEEE--EECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC-------
T ss_pred C-----CCEEEEEEEECCEEEE--EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 9-----9609999998781789--9737987756899999999608566886888757999999999998652014755-
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH-------HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC---CEE
Q ss_conf 67666651699815887787777766314899-------99999978988999995479755899999851998---189
Q gi|254781108|r 299 IGSTRLKKFVIFITDGENSGASAYQNTLNTLQ-------ICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG---QFF 368 (398)
Q Consensus 299 ~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~-------~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~---~yy 368 (398)
.....+|+|||||||+.|.+........... ....+|++||.||+||+|. ..+.+.|+.+|+.|+ |||
T Consensus 109 -~~~~~~~viillTDG~~n~~~~p~~~~~~i~~~~~~~~~~~~~~~~gi~i~~vgiG~-~~d~~~L~~iAs~~~~~~~~f 186 (497)
T 1rrk_A 109 -GWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVC 186 (497)
T ss_dssp -CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEE
T ss_pred -CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHCCCCCCEEEE
T ss_conf -556787599999797677789878999999987877777766876790799973688-679999998751789850499
Q ss_pred EECCHHHHHHHHHHHHHHH
Q ss_conf 9469899999999999987
Q gi|254781108|r 369 AVNDSRELLESFDKITDKI 387 (398)
Q Consensus 369 ~a~~~~~L~~aF~~I~~~i 387 (398)
.+++.++|.++|.++.++-
T Consensus 187 ~~~d~~~L~~~~~~~~~~~ 205 (497)
T 1rrk_A 187 KVKDMECLEDVFYQMIDES 205 (497)
T ss_dssp ETTCHHHHHHHHHHHSCGG
T ss_pred EECCHHHHHHHHHHCCCCC
T ss_conf 9499999999875302466
No 4
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.79 E-value=1.3e-18 Score=128.85 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=135.3
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102
Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398)
Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398)
..++|++++||.||||... +.+..+.++..++..+
T Consensus 13 ~~~~DivfvlD~SgSm~~~---------------------------------------------~~~~~k~~~~~li~~~ 47 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGAS---------------------------------------------NFTGAKKSLVNLIEKV 47 (223)
T ss_dssp --CEEEEEEEECSTTTCHH---------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHH
T ss_conf 8986189999488888828---------------------------------------------8999999999999973
Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCCCCCC----CCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 2027687765213465412677654311235----689999999973577-----8887445889999999611346666
Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQCTPL----SNNLNEVKSRLNKLN-----PYENTNTYPAMHHAYRELYNEKESS 295 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~~~~~~~~I~~l~-----~~G~T~~~~gl~~a~~~l~~~~~~~ 295 (398)
.... ...+.+.+.|++.... ..++ ..+...+...++.+. .+|+|++..+|..+.+.+.......
T Consensus 48 ~~~~-----~~~rvgvv~fs~~~~~--~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~ 120 (223)
T 1q0p_A 48 ASYG-----VKPRYGLVTYATYPKI--WVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVP 120 (223)
T ss_dssp HTTT-----CCCEEEEEEESSSEEE--EECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSC
T ss_pred CCCC-----CCCEEEEEEECCCEEE--EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 3688-----7758999997593789--97078630245678999998545421668889759999999999986401146
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH-------HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC---
Q ss_conf 65667666651699815887787777766314899-------99999978988999995479755899999851998---
Q gi|254781108|r 296 HNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQ-------ICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG--- 365 (398)
Q Consensus 296 ~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~-------~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~--- 365 (398)
. .......|++||+|||..+.+........... .+..++..|+.+|+||+|. ..+...|+.+|+.++
T Consensus 121 ~--~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~igvg~-~~~~~~L~~iAs~~~~~~ 197 (223)
T 1q0p_A 121 P--EGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQ 197 (223)
T ss_dssp C--TTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCC
T ss_pred C--CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCCHHHHHHHHCCCCCCE
T ss_conf 6--6677774289997688767789828999999863346799999876796599973687-569999999974989974
Q ss_pred CEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 1899469899999999999987512
Q gi|254781108|r 366 QFFAVNDSRELLESFDKITDKIQEQ 390 (398)
Q Consensus 366 ~yy~a~~~~~L~~aF~~I~~~i~~~ 390 (398)
+||.+.+.++|.++|.+|.++...+
T Consensus 198 ~~~~~~d~~~L~~~~~~i~~e~~s~ 222 (223)
T 1q0p_A 198 HVFKVKDMENLEDVFYQMIDESQSL 222 (223)
T ss_dssp CEEETTC-----------------C
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 7999089999999999999861478
No 5
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.76 E-value=2e-17 Score=121.60 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=127.8
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|+++++|.|+||...+ ...+..+..++..+.
T Consensus 5 ~~~DivfliD~S~Sm~~~~----------------------------------------------~~~k~~~~~~~~~~~ 38 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNW----------------------------------------------IEIYNFVQQLAERFV 38 (182)
T ss_dssp SCEEEEEEEECSGGGGGGH----------------------------------------------HHHHHHHHHHHHHCC
T ss_pred CCEEEEEEEECCCCCCCCH----------------------------------------------HHHHHHHHHHHHHHC
T ss_conf 9746999993897843279----------------------------------------------999999999999735
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH---HCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 02768776521346541267765431123568999999997---357788874458899999996113466666566766
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRL---NKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I---~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398)
....+.+.+.|++.. ....+++++...+...+ ..+.+.|+|+++.++..+.+.+..... .
T Consensus 39 -------~~~~rvglv~fs~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~g~T~~~~al~~~~~~~~~~~~--------~ 101 (182)
T 1shu_X 39 -------SPEMRLSFIVFSSQA--TIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGG--------L 101 (182)
T ss_dssp -------CTTEEEEEEEESSSE--EEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHTG--------G
T ss_pred -------CCCCEEEEEEECCCC--EEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC--------C
T ss_conf -------899879999960454--15246435578899988877406799984699999999999875036--------7
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC-HHHHHHHHH
Q ss_conf 6651699815887787777766314899999999789889999954797558999998519981899469-899999999
Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVND-SRELLESFD 381 (398)
Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~-~~~L~~aF~ 381 (398)
...|++|+||||..+.. ........++.+|+.||.||+||++ + .+...|+.+|++|++.|.+.+ .++|.+.++
T Consensus 102 ~~~~~ivllTDG~~~~~----~~~~~~~~a~~l~~~gv~v~~Vgig-~-~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~ 175 (182)
T 1shu_X 102 KTSSIIIALTDGKLDGL----VPSYAEKEAKISRSLGASVYCVGVL-D-FEQAQLERIADSKEQVFPVKGGFQALKGIIN 175 (182)
T ss_dssp GSCEEEEEEECCCCCTT----HHHHHHHHHHHHHHTTCEEEEEECS-S-CCHHHHHHHSSSGGGEEESSSTTHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCC----CCHHHHHHHHHHHHCCCEEEEEEEC-C-CCHHHHHHHHCCCCCEEEECCCHHHHHHHHH
T ss_conf 88559999972887888----6489999999999789999999847-5-4899999985899966993499999999999
Q ss_pred HHHHHHH
Q ss_conf 9999875
Q gi|254781108|r 382 KITDKIQ 388 (398)
Q Consensus 382 ~I~~~i~ 388 (398)
+|.++|.
T Consensus 176 ~i~~~~C 182 (182)
T 1shu_X 176 SILAQSC 182 (182)
T ss_dssp HHHHTBC
T ss_pred HHHHHHC
T ss_conf 9986239
No 6
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.76 E-value=2e-17 Score=121.64 Aligned_cols=182 Identities=18% Similarity=0.255 Sum_probs=132.5
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|++|++|.|+||.. + +..+..+..++..+.
T Consensus 6 ~~~DivfvlD~S~S~~~---f--------------------------------------------~~~k~f~~~~i~~~~ 38 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYP---W--------------------------------------------DSVTAFLNDLLKRMD 38 (213)
T ss_dssp -CEEEEEEEECCTTCCC---H--------------------------------------------HHHHHHHHHHHTTSC
T ss_pred CCEEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHHC
T ss_conf 84489999979888878---8--------------------------------------------999999999999724
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 027687765213465412677654311235689999999973577888--744588999999961134666665667666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE--NTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G--~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
. .....|.+.+.|..............+...+..+|+.+.+.| +|+++.+|.++.+.+.....+.+ ++
T Consensus 39 ~-----~~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~g~R-----~~ 108 (213)
T 1pt6_A 39 I-----GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGAR-----RG 108 (213)
T ss_dssp B-----STTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCC-----TT
T ss_pred C-----CCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC-----CC
T ss_conf 4-----8877378899974236899776556779999999877775078410021234344432013224787-----78
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCCC--CEEEECCH
Q ss_conf 6516998158877877777663148999999997898899999547975--------5899999851998--18994698
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE--------GQDLLRKCTDSSG--QFFAVNDS 373 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~--------~~~~l~~cAs~~~--~yy~a~~~ 373 (398)
.+|++||+|||..+. ........+.+|++||+||+||+|...+ ..+.|+.+|+.|+ |+|.+++.
T Consensus 109 ~~k~villTDG~~~d------~~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~ 182 (213)
T 1pt6_A 109 VKKVMVIVTDGESHD------NHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE 182 (213)
T ss_dssp CEEEEEEEESSCCSC------SHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred CEEEEEEEECCCCCC------CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCH
T ss_conf 668999984698788------41599999999988999999997476554543332469999998669985408980899
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999987512
Q gi|254781108|r 374 RELLESFDKITDKIQEQ 390 (398)
Q Consensus 374 ~~L~~aF~~I~~~i~~~ 390 (398)
++|.+++++|.++|...
T Consensus 183 ~~L~~i~~~l~~~ic~~ 199 (213)
T 1pt6_A 183 LALVTIVKTLGERIFAL 199 (213)
T ss_dssp GGGGGGHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999997246
No 7
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A*
Probab=99.75 E-value=2.5e-17 Score=121.01 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCC--CCCCCHHHHHHHHHCCCC-----CCCCCHHHHHHHH
Q ss_conf 002456655410220276877652134654126776543112--356899999999735778-----8874458899999
Q gi|254781108|r 212 VLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCT--PLSNNLNEVKSRLNKLNP-----YENTNTYPAMHHA 284 (398)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lt~~~~~~~~~I~~l~~-----~G~T~~~~gl~~a 284 (398)
..+..+..+++.+... ....|.+.+.|+......... ..+.++..+..+|+.|.. +|+|+++.+|.++
T Consensus 263 ~~k~f~~~lv~~~~~~-----~~~~rv~vi~ys~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ggT~t~~Al~~~ 337 (741)
T 3hrz_D 263 GAKKCLVNLIEKVASY-----GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAV 337 (741)
T ss_dssp HHHHHHHHHHHHHHHT-----TCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC-----CCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999863468-----88746999996477158885166667899999999971776667788875899999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHH-------HHHHHHHHCCCEEEEEEECCCCCHHHHH
Q ss_conf 996113466666566766665169981588778777776631489-------9999999789889999954797558999
Q gi|254781108|r 285 YRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTL-------QICEYMRNAGMKIYSVAVSAPPEGQDLL 357 (398)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~-------~~c~~~K~~gi~IytIg~~~~~~~~~~l 357 (398)
.+.+......... ...+.+|++||+|||+.+.+.......... ...+++|++||.||+||+|.+ .+...|
T Consensus 338 ~~~~~~~~~~~~~--~~~~~~~vlillTDG~s~~g~~p~~~~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~~-~~~~~L 414 (741)
T 3hrz_D 338 YSMMSWPDDVPPE--GWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPL-VNQVNI 414 (741)
T ss_dssp HHHHCCC--CCCT--TGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSS-CCHHHH
T ss_pred HHHHHHHHCCCCC--CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHH
T ss_conf 9864211015755--5678985999989986557888324444322122234667778878939999986775-899999
Q ss_pred HHHHCCCC---CEEEECCHHHHHHHHHHHHHHHHHCEEE
Q ss_conf 99851998---1899469899999999999987512457
Q gi|254781108|r 358 RKCTDSSG---QFFAVNDSRELLESFDKITDKIQEQSVR 393 (398)
Q Consensus 358 ~~cAs~~~---~yy~a~~~~~L~~aF~~I~~~i~~~r~~ 393 (398)
+.+|+.++ ++|.+.+.++|.++|.+|..+....+..
T Consensus 415 ~~iAs~~~~~~~v~~~~d~~~L~~~~~~~~~~~~~~~~c 453 (741)
T 3hrz_D 415 NALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLC 453 (741)
T ss_dssp HHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTST
T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999708888623999689999888874430023234445
No 8
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.73 E-value=1e-16 Score=117.38 Aligned_cols=184 Identities=18% Similarity=0.280 Sum_probs=133.4
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|+++++|.|+||.. + ...+..+..++..+.
T Consensus 21 ~~~DivfvlD~S~sv~~---~--------------------------------------------~~~k~fv~~li~~~~ 53 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYP---W--------------------------------------------ESVIAFLNDLLKRMD 53 (223)
T ss_dssp -CEEEEEEEECSTTCCC---H--------------------------------------------HHHHHHHHHHHTTSC
T ss_pred CCEEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHCC
T ss_conf 86569999979887436---9--------------------------------------------999999999999715
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 02768776521346541267765431123568999999997357788--8744588999999961134666665667666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPY--ENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~--G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
- .....+.+.+.|..............++..+...|+.+.+. ++|+++.+|.++.+.+.....+.+ ++
T Consensus 54 i-----~~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~~~i~~i~~~~~~~t~~~~aL~~~~~~~~~~~~g~R-----~~ 123 (223)
T 2b2x_A 54 I-----GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEARGAR-----RG 123 (223)
T ss_dssp C-----STTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCC-----TT
T ss_pred C-----CCCCCEEEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC-----CC
T ss_conf 5-----8886089899860426786054555768999999874312477332217778888887503335888-----78
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCH--------HHHHHHHHCCC--CCEEEECCH
Q ss_conf 65169981588778777776631489999999978988999995479755--------89999985199--818994698
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEG--------QDLLRKCTDSS--GQFFAVNDS 373 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~--------~~~l~~cAs~~--~~yy~a~~~ 373 (398)
..|++||+|||..+. ..........+|+.||+||+||+|.+.+. .+.|+.+|+.| .|+|.+++.
T Consensus 124 ~~kvlillTDG~~~d------~~~~~~~a~~lk~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~ 197 (223)
T 2b2x_A 124 VKKVMVIVTDGESHD------NYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE 197 (223)
T ss_dssp SEEEEEEEESSCCTT------GGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESST
T ss_pred CCEEEEEEECCCCCC------CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCH
T ss_conf 725799982698788------31299999999875998999998466664432442369999998669985518981899
Q ss_pred HHHHHHHHHHHHHHHHCEE
Q ss_conf 9999999999998751245
Q gi|254781108|r 374 RELLESFDKITDKIQEQSV 392 (398)
Q Consensus 374 ~~L~~aF~~I~~~i~~~r~ 392 (398)
++|.+++++|.++|.....
T Consensus 198 ~~L~~i~~~l~~~ic~~e~ 216 (223)
T 2b2x_A 198 LALVTIVKALGERIFALEA 216 (223)
T ss_dssp TGGGGGHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999988643103
No 9
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A
Probab=99.70 E-value=6.9e-16 Score=112.39 Aligned_cols=177 Identities=11% Similarity=0.132 Sum_probs=125.5
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|+++++|.|+||.... .+..+..+..++..+.
T Consensus 4 ~~~DivfllD~S~s~~~~~---------------------------------------------~~~~k~fv~~~i~~~~ 38 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASY---------------------------------------------FDEMKSFAKAFISKAN 38 (189)
T ss_dssp CCEEEEEEEECSSSSCHHH---------------------------------------------HHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCC
T ss_conf 8578999994879988689---------------------------------------------9999999999999707
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 027687765213465412677654311235689999999973577-8887445889999999611346666656676666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~-~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
- .....|.+.+.|..............+...+...|+.+. ++|+|+++.+|.++.+.++....+.+ ++.
T Consensus 39 i-----~~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~t~~~~al~~a~~~~~~~~~g~R-----~~a 108 (189)
T 1atz_A 39 I-----GPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGAR-----PGA 108 (189)
T ss_dssp B-----STTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCTTCC-----TTS
T ss_pred C-----CCCCCEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCC
T ss_conf 5-----888748999997501389998523675899999999887437787632578999999740102799-----988
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECCHHHHHHHHHH
Q ss_conf 516998158877877777663148999999997898899999547975589999985199--818994698999999999
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS--GQFFAVNDSRELLESFDK 382 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~--~~yy~a~~~~~L~~aF~~ 382 (398)
.|++|++|||..+. ....+++.+|+.||+||+||+|. ..+...|+..|+.| ++.|.+.+.++|.. +..
T Consensus 109 ~k~vvlltdg~~~~--------~~~~~~~~lk~~~i~v~~igig~-~~~~~~l~~ia~~~~~~~~~~~~~~~~l~~-l~~ 178 (189)
T 1atz_A 109 SKAVVILVTDVSVD--------SVDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGDSNVVKLQRIEDLPT-MVT 178 (189)
T ss_dssp EEEEEEEECSCCSS--------CCHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGGGGCEEESSTTHHHH-HHH
T ss_pred EEEEEEEECCCCCC--------CHHHHHHHHHHCCCEEEEEEECC-CCCHHHHHHHHCCCCCCCEEEECCHHHHHH-HHH
T ss_conf 05899992599865--------18999999998899999999588-699999999857888775899468766888-999
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254781108|r 383 ITDKI 387 (398)
Q Consensus 383 I~~~i 387 (398)
|.++|
T Consensus 179 ~~~~~ 183 (189)
T 1atz_A 179 LGNSF 183 (189)
T ss_dssp SCSHH
T ss_pred HHHHH
T ss_conf 99999
No 10
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.69 E-value=1.5e-16 Score=116.37 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=128.9
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410
Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398)
Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398)
...++|+++++|.|+||.... ....+..+..+++.
T Consensus 6 ~~~~~DivfvlD~S~Sm~~~~---------------------------------------------~~~~k~~i~~li~~ 40 (198)
T 1n3y_A 6 SRQEQDIVFLIDGSGSISSRN---------------------------------------------FATMMNFVRAVISQ 40 (198)
T ss_dssp --CCEEEEEEEECCTTSCHHH---------------------------------------------HHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHH
T ss_conf 688864899996879988799---------------------------------------------99999999999997
Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 220276877652134654126776543112356--89999999973577-888744588999999961134666665667
Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLS--NNLNEVKSRLNKLN-PYENTNTYPAMHHAYRELYNEKESSHNTIG 300 (398)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~I~~l~-~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~ 300 (398)
+. + ...|.+.+.|....... .+|+ .+...+...|+.+. .+|+|+++.++.++.+.++....+ .
T Consensus 41 l~-----~--~~~rv~vv~f~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~t~~~~al~~a~~~~~~~~~~-----~ 106 (198)
T 1n3y_A 41 FQ-----R--PSTQFSLMQFSNKFQTH--FTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYG-----A 106 (198)
T ss_dssp SC-----T--TTEEEEEEEESSSEEEE--ECHHHHHHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGT-----C
T ss_pred HC-----C--CCCEEEEEEEECCEEEE--CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----C
T ss_conf 08-----9--98589999983432341--266664338999998876540369873889999999998423205-----7
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCC--CCEEEECCHHH
Q ss_conf 66665169981588778777776631489999999978988999995479---75589999985199--81899469899
Q gi|254781108|r 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSS--GQFFAVNDSRE 375 (398)
Q Consensus 301 ~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~--~~yy~a~~~~~ 375 (398)
.+..+|++||+|||..+.. ......+++.+|+.||+||+||++.. ....+.|+.+|+.| .++|.+++.++
T Consensus 107 r~~~~kvivlltDG~~~~~-----~~~~~~~~~~~~~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~ 181 (198)
T 1n3y_A 107 RRDAAKILIVITDGKKEGD-----SLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp CTTSEEEEEEEESSCCBSC-----SSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred CCCCCCEEEEEECCCCCCC-----CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 7876425999935898887-----20599999999978988999997876677534999999866998651999299999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999987512
Q gi|254781108|r 376 LLESFDKITDKIQEQ 390 (398)
Q Consensus 376 L~~aF~~I~~~i~~~ 390 (398)
|.+++++|.++|..+
T Consensus 182 L~~i~~~l~~~ic~~ 196 (198)
T 1n3y_A 182 LKDIQNQLKEKIFAI 196 (198)
T ss_dssp GGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999873167
No 11
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Probab=99.69 E-value=2.1e-15 Score=109.49 Aligned_cols=172 Identities=10% Similarity=0.113 Sum_probs=125.4
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220
Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398)
Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398)
.+|+++++|.|+||.... ....+..+..+++.+.-
T Consensus 2 vlDivfllD~S~Sv~~~~---------------------------------------------f~~~k~fi~~~i~~l~i 36 (184)
T 3gxb_A 2 VLDVAFVLEGSDKIGEAD---------------------------------------------FNRSKEFMEEVIQRMDV 36 (184)
T ss_dssp CEEEEEEEECSTTTCHHH---------------------------------------------HHHHHHHHHHHHHTSCB
T ss_pred CEEEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCCC
T ss_conf 168999997989989799---------------------------------------------99999999999996365
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2768776521346541267765431123568999999997357788--87445889999999611346666656676666
Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPY--ENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~--G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
. ...+|.+.+.|+..........-..+...+..+|+.+.+. ++|+++.+|.++.+.++....+. .++.
T Consensus 37 ~-----~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~i~~~~g~~t~~~~AL~~~~~~~f~~~~~~-----R~~~ 106 (184)
T 3gxb_A 37 G-----QDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGD-----REQA 106 (184)
T ss_dssp C-----TTSEEEEEEEESSSEEEEECTTSCCCHHHHHHHHHTCCCCCCSCCCHHHHHHHHHHTGGGSCCGG-----GGGS
T ss_pred C-----CCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC-----CCCC
T ss_conf 9-----87349999885471789984687677799999863001137765417999999999852634489-----9999
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 51699815887787777766314899999999789889999954797558999998519981899469899999999999
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I~ 384 (398)
+|++||+|||..+.... .+.+||+||+||+|.+ .+.+.|+.+|+ ++++|.+++.++|.+.+.+|.
T Consensus 107 ~kvivllTdG~s~d~~~-------------~~~~gi~i~~vgvG~~-~~~~~L~~ia~-~~~~~~~~~~~~L~~~~~~l~ 171 (184)
T 3gxb_A 107 PNLVYMVTGNPASDEIK-------------RLPGDIQVVPIGVGPN-ANVQELERIGW-PNAPILIQDFETLPREAPDLV 171 (184)
T ss_dssp CEEEEEEECSCCSSCCC-------------CCCTTEEEEEEEESTT-SCHHHHHHHHT-TSCCEEESCTTTHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHH-------------HHHCCCEEEEEECCCC-CCHHHHHHHCC-CCCEEEECCHHHHHHHHHHHH
T ss_conf 66999965999706899-------------9848998999984674-79999998739-997799489999999999999
Q ss_pred HHHH
Q ss_conf 9875
Q gi|254781108|r 385 DKIQ 388 (398)
Q Consensus 385 ~~i~ 388 (398)
.++.
T Consensus 172 ~~~c 175 (184)
T 3gxb_A 172 LQRC 175 (184)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 7546
No 12
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.9e-15 Score=108.70 Aligned_cols=175 Identities=17% Similarity=0.303 Sum_probs=128.7
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
..+|++||+|.||||..... ..+|++.++.++..+++.+.
T Consensus 10 ~g~divlvvD~SgSM~~~D~----------------------------------------~~~R~~~ak~~~~~~l~~~~ 49 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDV----------------------------------------QPSRLEKAKRLISRLVDELD 49 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSS----------------------------------------SSCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCCCCCCCC----------------------------------------CCCHHHHHHHHHHHHHHHCC
T ss_conf 79589999979857788777----------------------------------------84899999999999995099
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 027687765213465412677654311235689999999973577----8887445889999999611346666656676
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN----PYENTNTYPAMHHAYRELYNEKESSHNTIGS 301 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~----~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~ 301 (398)
..+.+.+.|.... ....+++.+.......+..+. +.|||++..+|.++...|...
T Consensus 50 ---------~~rvglv~F~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~gT~~~~al~~a~~~l~~~---------- 108 (218)
T 3ibs_A 50 ---------NDKVGMIVFAGDA--FTQLPITSDYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQ---------- 108 (218)
T ss_dssp ---------SCEEEEEEESSSE--EEEEEEESCHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSC----------
T ss_pred ---------CCEEEEEEECCCC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH----------
T ss_conf ---------9769999976844--2011243067788888875221456689963789999999874120----------
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC------------------------HHHHH
Q ss_conf 666516998158877877777663148999999997898899999547975------------------------58999
Q gi|254781108|r 302 TRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE------------------------GQDLL 357 (398)
Q Consensus 302 ~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~------------------------~~~~l 357 (398)
....|+|||+|||+++... .......++..++.+|+++++.+.. +..+|
T Consensus 109 ~~~~~~iillSDG~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 181 (218)
T 3ibs_A 109 EGVGRAIIVITDGENHEGG-------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMC 181 (218)
T ss_dssp SSCCEEEEEEECCTTCCSC-------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHH
T ss_pred CCCCCEEEEECCCCCCCCC-------HHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 2677679996589988761-------389999998769879999862687862112267752214677624332699999
Q ss_pred HHHHC-CCCCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 99851-99818994698999999999999875
Q gi|254781108|r 358 RKCTD-SSGQFFAVNDSRELLESFDKITDKIQ 388 (398)
Q Consensus 358 ~~cAs-~~~~yy~a~~~~~L~~aF~~I~~~i~ 388 (398)
+.+|. ++|.||.+++.++|.++|.+.-+++.
T Consensus 182 ~~iA~~tgG~y~~~~~~~~~~~~i~~~I~~l~ 213 (218)
T 3ibs_A 182 QEIAKDGKGIYVRVDNSNSAQKAISQEISKMA 213 (218)
T ss_dssp HHHHHHTEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 99999649189995287999999999997542
No 13
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.67 E-value=2.1e-16 Score=115.51 Aligned_cols=180 Identities=18% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|+++++|.|+||.... ....+..+..++..+.
T Consensus 4 ~~~DivfvlD~S~s~~~~~---------------------------------------------f~~~k~~i~~~i~~l~ 38 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHD---------------------------------------------FRRMKEFVSTVMEQLK 38 (194)
T ss_dssp CCEEEEEEEECCTTSCHHH---------------------------------------------HHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCC
T ss_conf 8717999995989988799---------------------------------------------9999999999999719
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 0276877652134654126776543112356--899999999735778-8874458899999996113466666566766
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLS--NNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398)
+ ..+|.+.+.|....... .+|+ .+...+..+|+.+.. +|+|+++.+|.++.+.+....... ..
T Consensus 39 -----~--~~~rvgvv~f~~~~~~~--~~l~~~~~~~~~~~~i~~l~~~~g~t~~~~al~~a~~~~~~~~~~~-----~~ 104 (194)
T 1mf7_A 39 -----K--SKTLFSLMQYSEEFRIH--FTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGA-----RK 104 (194)
T ss_dssp -----C--TTEEEEEEEESSSEEEE--ECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTC-----CT
T ss_pred -----C--CCCEEEEEEEEEEEEEE--ECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-----CC
T ss_conf -----8--88089999965403775--1146636689999876413423698669999999999874143267-----67
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCCC--CEEEECCHHHHH
Q ss_conf 665169981588778777776631489999999978988999995479---755899999851998--189946989999
Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSSG--QFFAVNDSRELL 377 (398)
Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~~--~yy~a~~~~~L~ 377 (398)
+.+|++||+|||+.+... .....+...+|..||+||+||++.. ......|+.+|+.|+ ++|.+++.++|.
T Consensus 105 ~~~kvvvl~tDG~~~~~~-----~~~~~~~~~l~~~gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~ 179 (194)
T 1mf7_A 105 NAFKILVVITDGEKFGDP-----LGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALK 179 (194)
T ss_dssp TSEEEEEEEESSCCBSCS-----SCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGG
T ss_pred CCCEEEEEEECCCCCCCH-----HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf 766499999478878980-----449999999997799999999788766634699999986699866089949999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998751
Q gi|254781108|r 378 ESFDKITDKIQE 389 (398)
Q Consensus 378 ~aF~~I~~~i~~ 389 (398)
+.+++|.++|.-
T Consensus 180 ~~~~~l~~~i~~ 191 (194)
T 1mf7_A 180 TIQNQLREKIFC 191 (194)
T ss_dssp GGHHHHHHHHHT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999876414
No 14
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.66 E-value=1.4e-14 Score=104.56 Aligned_cols=183 Identities=10% Similarity=0.195 Sum_probs=133.1
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|+++|||.||||... +....+.++..+++.+.
T Consensus 12 ~~~DlvfvlD~SgSm~~~---------------------------------------------~~~~~k~~~~~li~~l~ 46 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEA---------------------------------------------EFEVLKAFVVDMMERLR 46 (202)
T ss_dssp SCEEEEEEEECBTTSCHH---------------------------------------------HHHHHHHHHHHHHHTBC
T ss_pred CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHCC
T ss_conf 873489999688998858---------------------------------------------99999999999998666
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0276877652134654126776543112356899999999735778--88744588999999961134666665667666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP--YENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~--~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
.. ....+.+.+.|..............+...+...+..+.. +++++...++.++...+..... ...
T Consensus 47 ~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~ 114 (202)
T 1ijb_A 47 VS-----QKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKID-------RPE 114 (202)
T ss_dssp BS-----TTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHHHHTSSSCS-------CTT
T ss_pred CC-----CCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC-------CCC
T ss_conf 78-----887368887742632688606753149999999975540477520499999999975544205-------776
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC--CCCCEEEECCHHHHHHHHH
Q ss_conf 65169981588778777776631489999999978988999995479755899999851--9981899469899999999
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD--SSGQFFAVNDSRELLESFD 381 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs--~~~~yy~a~~~~~L~~aF~ 381 (398)
..|.+|+++||..+... ......+++.+|+.||+||+||+|.+ .+...|+.+|+ +++++|.+++.++|.++++
T Consensus 115 ~~~~~i~~~~~~~~~~~----~~~~~~~a~~l~~~gi~i~~igiG~~-~~~~~l~~ia~~~~~~~~~~~~~~~~l~~~~~ 189 (202)
T 1ijb_A 115 ASRIALLLMASQEPQRM----SRNFVRYVQGLKKKKVIVIPVGIGPH-ANLKQIRLIEKQAPENKAFVLSSVDELEQQRD 189 (202)
T ss_dssp SEEEEEEEECCCCCGGG----CTTHHHHHHHHHHTTEEEEEEEESTT-SCHHHHHHHHHHCTTCCCEEESSGGGHHHHHH
T ss_pred CCEEEEEEEECCCCCCC----CHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
T ss_conf 52135899953689863----24499999999867988999996784-69999999973799761899489999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999987512
Q gi|254781108|r 382 KITDKIQEQ 390 (398)
Q Consensus 382 ~I~~~i~~~ 390 (398)
+|.+.|...
T Consensus 190 ~i~~~iC~~ 198 (202)
T 1ijb_A 190 EIVSYLCDL 198 (202)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHCCC
T ss_conf 999986288
No 15
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.60 E-value=6.6e-14 Score=100.54 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=112.6
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
-.+++|+|.|+||.... ...+|+...+.++..+++.+...
T Consensus 3 ea~viviD~S~SM~~~D----------------------------------------~~p~Rl~~ak~a~~~li~~~~~~ 42 (192)
T 2x5n_A 3 EATMILIDNSEWMINGD----------------------------------------YIPTRFEAQKDTVHMIFNQKIND 42 (192)
T ss_dssp EEEEEEECCSGGGGCTT----------------------------------------SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHCCCC----------------------------------------CCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 79999998985543789----------------------------------------89789999999999999987645
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 76877652134654126776543112356899999999735778887445889999999611346666656676666516
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKF 307 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~ 307 (398)
... .+.+.+.|..... ....+++.+...+...++.+.++|+|+++.|+..|++.|.... ....++.
T Consensus 43 ~~~-----~~vg~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~G~T~l~~al~~A~~~l~~~~--------~~~~~~~ 108 (192)
T 2x5n_A 43 NPE-----NMCGLMTIGDNSP-QVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRE--------NKIQRQR 108 (192)
T ss_dssp CTT-----CEEEEEECCTTSC-CEEEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHTCS--------CTTSEEE
T ss_pred CCC-----CEEEEEEECCCCC-CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--------HCCCCEE
T ss_conf 977-----7499986057643-0147884089999987402344687652279999999998621--------1046506
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 998158877877777663148999999997898899999547975589999985
Q gi|254781108|r 308 VIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCT 361 (398)
Q Consensus 308 iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cA 361 (398)
|+|+|||..+.. ......+++.+|+.||+||+||||.+. +...|+.++
T Consensus 109 iil~tdg~~~~~-----~~~~~~~a~~~~~~~i~i~~Ig~G~~~-~~~~l~~~~ 156 (192)
T 2x5n_A 109 IVAFVGSPIVED-----EKNLIRLAKRMKKNNVAIDIIHIGELQ-NESALQHFI 156 (192)
T ss_dssp EEEEECSCCSSC-----HHHHHHHHHHHHHTTEEEEEEEESCC----CHHHHHH
T ss_pred EEEEECCCCCCC-----HHHHHHHHHHHCCCCCEEEEEEEECCC-CHHHHHHHH
T ss_conf 999968897530-----678999999851357507999971767-879999999
No 16
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.48 E-value=2.5e-14 Score=103.01 Aligned_cols=173 Identities=15% Similarity=0.208 Sum_probs=121.7
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
+++|+++++|.|+||... +....+..+..+++.+.
T Consensus 1 g~~DivfllD~S~Sm~~~---------------------------------------------~f~~~k~~~~~~i~~l~ 35 (179)
T 1mjn_A 1 GNVDLVFLFDGSMSLQPD---------------------------------------------EFQKILDFMKDVMKKCS 35 (179)
T ss_dssp CCEEEEEEEECBTTCCHH---------------------------------------------HHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHHC
T ss_conf 976999999688999879---------------------------------------------99999999999999737
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 027687765213465412677654311235689999999973577-8887445889999999611346666656676666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~-~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
. ...+.....|..............+...+...++.+. .+|+|++..++.++...++....... +..
T Consensus 36 ~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~al~~a~~~~~~~~~~~r-----~~~ 103 (179)
T 1mjn_A 36 N-------TSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGAR-----PDA 103 (179)
T ss_dssp T-------SSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCC-----TTS
T ss_pred C-------CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCC
T ss_conf 5-------7766999998602111135212046999999875125578983278899999999854530689-----987
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCC--CCEEEECCHHHHHHH
Q ss_conf 5169981588778777776631489999999978988999995479---75589999985199--818994698999999
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSS--GQFFAVNDSRELLES 379 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~--~~yy~a~~~~~L~~a 379 (398)
+|++||+|||+.+.... .++..++.++.++++.. ......|+.+|+.| .|+|.+++.++|.+.
T Consensus 104 ~k~ivllTDG~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~ 171 (179)
T 1mjn_A 104 TKVLIIITDGEATDSGN------------IDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDL 171 (179)
T ss_dssp EEEEEEEESSCCSSCSC------------CGGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCH
T ss_pred CEEEEEECCCCCCCCHH------------HHHHHCCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHH
T ss_conf 14899980799886068------------999829868899999468860179999998579986339987999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999987
Q gi|254781108|r 380 FDKITDKI 387 (398)
Q Consensus 380 F~~I~~~i 387 (398)
+++|.++|
T Consensus 172 ~~~l~~~I 179 (179)
T 1mjn_A 172 CTELQKKI 179 (179)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
T ss_conf 99997249
No 17
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.37 E-value=8.7e-12 Score=87.80 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=101.8
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
..+|+++++|.|+||... +....+.++..+++.+.
T Consensus 16 ~~lDivfvlD~S~Sm~~~---------------------------------------------~~~~~k~~v~~~i~~l~ 50 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQ---------------------------------------------NFRLVKQFLHTFLMVLP 50 (178)
T ss_dssp TCEEEEEEEECCTTTCHH---------------------------------------------HHHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHHH
T ss_conf 987699999588998848---------------------------------------------99999999999999850
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCC--CCCCCCCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 02768776521346541267765431--12356899999999735778-8874458899999996113466666566766
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQ--CTPLSNNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398)
... ...+...+.|........ ....+.+...+...+..+.. .++++...++.++.+.+....... ..
T Consensus 51 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~-----~~ 120 (178)
T 2xgg_A 51 IGP-----EEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPG-----RE 120 (178)
T ss_dssp BST-----TSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCTT-----CT
T ss_pred CCC-----CCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC-----CC
T ss_conf 357-----61399987404430366402443104299999999862302365507899999999875330378-----65
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 66516998158877877777663148999999997898899999547975589999985
Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCT 361 (398)
Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cA 361 (398)
+.+|++||||||+.+. ......+++.+|+.||+||+||+| +....++|..-+
T Consensus 121 ~~~~vviliTDG~~~~------~~~~~~~a~~lk~~gi~I~~iGiG-~~~~~ell~~~~ 172 (178)
T 2xgg_A 121 HVPKLVIGMTDGESDS------DFRTVRAAKEIRELGGIVTVLAVG-HYVAAALVPRGS 172 (178)
T ss_dssp TSCEEEEEEESSCCCH------HHHHSHHHHHHHHTTCEEEEEECC-------------
T ss_pred CCCEEEEEEECCCCCC------CCCHHHHHHHHHHCCCEEEEEEEC-CCCHHHCCCCCC
T ss_conf 2301369984388788------737999999999789989999978-752442566664
No 18
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.32 E-value=3.2e-14 Score=102.37 Aligned_cols=175 Identities=13% Similarity=0.134 Sum_probs=112.4
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102
Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398)
Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398)
..+.+++||+|.||||... +++..+.++..++...
T Consensus 3 ~~~~~iv~vlD~SGSM~~~---------------------------------------------~~~~~k~~~~~~l~~~ 37 (189)
T 2x31_A 3 MSDRVLIFAVDASGSAAVA---------------------------------------------RLSEAKGAVELLLGRA 37 (189)
T ss_dssp SSCCEEEEEEECCTTSCC-----------------------------------------------CHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEEEECCCCCCH---------------------------------------------HHHHHHHHHHHHHHHH
T ss_conf 7774699999817578926---------------------------------------------9999999999999972
Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 20276877652134654126776543112356899999999735778887445889999999611346666656676666
Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
... ..+...+.|..... ....+++.+...++..++.+.+.|+|+...++..+++.+...+. +..
T Consensus 38 ~~~-------~d~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~GgT~~~~al~~a~~~~~~~~~--------~~~ 101 (189)
T 2x31_A 38 YAA-------RDHVSLITFRGTAA-QVLLQPSRSLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQARS--------RGM 101 (189)
T ss_dssp CTT-------TSCCCEEEESBSCC-CBCTTTCSCHHHHHHHHHHCCCCBCCCCHHHHHHHHHHHHTCTT--------TCS
T ss_pred CCC-------CCEEEEEEEEECCC-CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC--------CCC
T ss_conf 568-------96799999993243-13588746899999998534457986178999999999997224--------588
Q ss_pred CEEEEECCCCCCCCCCCCCCCHH-----HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC-CCCEEEECCH--HHH
Q ss_conf 51699815887787777766314-----899999999789889999954797558999998519-9818994698--999
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLN-----TLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDS-SGQFFAVNDS--REL 376 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~-----~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~-~~~yy~a~~~--~~L 376 (398)
.++|||+|||..+.+........ ...++..++..||.+++|+++.. ....|+++|.. +|.||.+++. ++|
T Consensus 102 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~i~~g~~--~~~~l~~iA~~~gG~y~~~~~~~~~~l 179 (189)
T 2x31_A 102 TPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPRATAHKM 179 (189)
T ss_dssp SEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 777999647987768786045899999999999998726983799847978--769999999761999997599999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781108|r 377 LESFDK 382 (398)
Q Consensus 377 ~~aF~~ 382 (398)
.+++.+
T Consensus 180 ~~~~~~ 185 (189)
T 2x31_A 180 ADVLGA 185 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 19
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=99.20 E-value=1.1e-09 Score=75.27 Aligned_cols=162 Identities=13% Similarity=0.105 Sum_probs=105.2
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.|+|++||+|.||||.. ++..+|.++..++..+.
T Consensus 2 ~pvDl~fviD~SgSM~~----------------------------------------------~i~~~k~~~~~l~~~l~ 35 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQG----------------------------------------------HLSNVQTLGSDLLKALN 35 (212)
T ss_dssp CCEEEEEEEECCGGGTT----------------------------------------------THHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCHHH----------------------------------------------HHHHHHHHHHHHHHHHH
T ss_conf 84689999988805267----------------------------------------------99999999999999997
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 02768776521346541267765431123568999999997357788874----45889999999611346666656676
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENT----NTYPAMHHAYRELYNEKESSHNTIGS 301 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T----~~~~gl~~a~~~l~~~~~~~~~~~~~ 301 (398)
... ...|.+.+.|.+... ....+++.+...++.+|+.+.+.||+ +...||.++...+...+ .
T Consensus 36 ~~~-----~~~r~g~v~f~d~~~-~~~~~~t~~~~~~~~~i~~~~~~gg~d~~e~~~~al~~a~~~~~~~~--------~ 101 (212)
T 2iue_A 36 EIS-----RSGRIGFGSIVNMTF-QHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIG--------W 101 (212)
T ss_dssp HHC-----SCEEEEEEEESSSCE-EEEEEEESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHT--------C
T ss_pred HCC-----CCEEEEEEECCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC--------C
T ss_conf 269-----870899997056434-33465576399999998630214898885069999999998766437--------7
Q ss_pred CCCCEEEEECCCCCCCCCCCCC-------------------------CCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH
Q ss_conf 6665169981588778777776-------------------------631489999999978988999995479755899
Q gi|254781108|r 302 TRLKKFVIFITDGENSGASAYQ-------------------------NTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDL 356 (398)
Q Consensus 302 ~~~~k~iillTDG~~~~~~~~~-------------------------~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~ 356 (398)
....|+|||+|||......... +......++..+++++|..+... .....+.
T Consensus 102 ~~~~~~ivl~tD~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~---~~~~~~~ 178 (212)
T 2iue_A 102 RNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVV---PSRMVKT 178 (212)
T ss_dssp CSSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEE---EHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE---CCCHHHH
T ss_conf 7773599999689865566302444531158715752565356777677779999999986397589997---4532789
Q ss_pred HHHHHC-CCCCEEEE
Q ss_conf 999851-99818994
Q gi|254781108|r 357 LRKCTD-SSGQFFAV 370 (398)
Q Consensus 357 l~~cAs-~~~~yy~a 370 (398)
++..+. .++.++..
T Consensus 179 ~~~l~~~~~g~~v~~ 193 (212)
T 2iue_A 179 YEKLTTFIPKLTIGE 193 (212)
T ss_dssp HHHHHHHSTTCEEEE
T ss_pred HHHHHHHCCCCCHHH
T ss_conf 999999738741266
No 20
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.14 E-value=1.5e-11 Score=86.30 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=104.3
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 213465412677654311235689999999973577-8887445889999999611346666656676666516998158
Q gi|254781108|r 235 SVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITD 313 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~-~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTD 313 (398)
..+.+.+.|.....................+++.+. .+|.|++..|+..+...++....+. .++.+|++|++||
T Consensus 166 ~~qvg~vqys~~~~~~f~l~d~~~~~~~~~~v~~i~~~~g~T~Ta~ai~~~~~~~f~~~~g~-----r~~a~kv~IviTD 240 (1095)
T 3k6s_A 166 STQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGA-----RRDAAKILIVITD 240 (1095)
T ss_dssp SEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTC-----CSSSEEEEEEEES
T ss_pred CEEEEEEEECCCEEEEEEHHHCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCC-----CCCCCEEEEEEEC
T ss_conf 54999996137325888703433330267875414613674307888999999763164268-----8898417999926
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCCC--CEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 8778777776631489999999978988999995479---755899999851998--18994698999999999999875
Q gi|254781108|r 314 GENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSSG--QFFAVNDSRELLESFDKITDKIQ 388 (398)
Q Consensus 314 G~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~~--~yy~a~~~~~L~~aF~~I~~~i~ 388 (398)
|+-.... .......+.++.+||.+|.||++.. ......|+.+|++|+ ++|.+++.++|.++...+.++|.
T Consensus 241 G~s~~d~-----~~l~~~i~~~~~~gI~~~aIGvg~~~~~~~~~~eL~~iAs~p~~~~~f~v~~~~aL~~i~~~L~~~i~ 315 (1095)
T 3k6s_A 241 GKKEGDS-----LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIF 315 (1095)
T ss_dssp SCCBSCS-----SCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHH
T ss_pred CCCCCCC-----CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 8645673-----20344444586489289999725432564335354212058874038993555776677776416525
Q ss_pred HCEEE
Q ss_conf 12457
Q gi|254781108|r 389 EQSVR 393 (398)
Q Consensus 389 ~~r~~ 393 (398)
.+...
T Consensus 316 ~ieg~ 320 (1095)
T 3k6s_A 316 AIEGT 320 (1095)
T ss_dssp TCCCC
T ss_pred EEECC
T ss_conf 64545
No 21
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.58 E-value=1.7e-06 Score=56.11 Aligned_cols=135 Identities=12% Similarity=0.186 Sum_probs=77.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC------------
Q ss_conf 3112356899999999735778887445889-999999611346666656676666516998158877------------
Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYPA-MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN------------ 316 (398)
Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~g-l~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------ 316 (398)
...++||.+...+..+|++...+|+-...+| |.-.++...-...-.|+ ...+|++||.||...
T Consensus 191 ~~~~~lt~~~~~f~~~v~~~~~s~n~d~pe~~~dal~q~~vc~~~igwr----~~~~~~~v~~tD~~~H~agDg~l~gi~ 266 (690)
T 3fcs_B 191 KHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWR----NDASHLLVFTTDAKTHIALDGRLAGIV 266 (690)
T ss_dssp EEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC----SSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred EEECCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCCC----CCCEEEEEEEECCCCCCCCCCCCEEEE
T ss_conf 4654566678999998752551168778750466787765231223567----897699999806731125665423563
Q ss_pred --CCCCCCC-----------CCH-HHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHC-CCC-C-EEEECCHHHHHH
Q ss_conf --8777776-----------631-489999999978988-999995479755899999851-998-1-899469899999
Q gi|254781108|r 317 --SGASAYQ-----------NTL-NTLQICEYMRNAGMK-IYSVAVSAPPEGQDLLRKCTD-SSG-Q-FFAVNDSRELLE 378 (398)
Q Consensus 317 --~~~~~~~-----------~~~-~~~~~c~~~K~~gi~-IytIg~~~~~~~~~~l~~cAs-~~~-~-yy~a~~~~~L~~ 378 (398)
|.+.-+. ..+ ....+..++++++|. ||.|.-. ...+.+..+. -++ . .-...+++.|.+
T Consensus 267 ~pnd~~chl~~~~~y~~~~~~dyPs~~q~~~~l~~~~i~~ifavt~~----~~~~y~~l~~~~~~~~~~~l~~dssnv~~ 342 (690)
T 3fcs_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN----VVNLYQNYSELIPGTTVGVLSMDSSNVLQ 342 (690)
T ss_dssp SCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGG----GHHHHHHHHHHSTTCEEEEECTTCTTHHH
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC----CCCHHHHHHHHCCCCEEEECCCCCHHHHH
T ss_conf 16776114079885255676778999999999987296799997665----40068999975487526870578615999
Q ss_pred HHHHHHHHHHHCEE
Q ss_conf 99999998751245
Q gi|254781108|r 379 SFDKITDKIQEQSV 392 (398)
Q Consensus 379 aF~~I~~~i~~~r~ 392 (398)
..++..++|.+.+.
T Consensus 343 li~~~y~~~~s~v~ 356 (690)
T 3fcs_B 343 LIVDAYGKIRSKVE 356 (690)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHCEEE
T ss_conf 99999987526467
No 22
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=98.46 E-value=8.6e-06 Score=51.83 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCEEEEECCCCCC-------------
Q ss_conf 11235689999999973577888744588999999-9611346666656676666516998158877-------------
Q gi|254781108|r 251 QCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAY-RELYNEKESSHNTIGSTRLKKFVIFITDGEN------------- 316 (398)
Q Consensus 251 ~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~-~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------- 316 (398)
...+||.+...+..+|+.+.+.||-...++..-|. +.+.-.+.-.|. .+.+|++||+||.-.
T Consensus 192 ~~l~lT~d~~~F~~~V~~~~~sGggD~PE~~~dAL~qa~vc~~~igWR----~~a~rilvliTDA~~H~agDgkl~giv~ 267 (461)
T 2vdr_B 192 HVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWR----NDASHLLVFTTDAKTHIALDGRLAGIVQ 267 (461)
T ss_dssp EEEEEESCHHHHHHHHHTCCCCCCSBSSBCHHHHHHHHHHCHHHHTCC----TTSEEEEEEEESSCBCCTTGGGGGTCCS
T ss_pred EECCCCCCHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEECCCCCCCCCCCCCCEEEC
T ss_conf 524688789999998750365479867766899999999863107878----6875999998978843368754410443
Q ss_pred -CCCCCCC-----------CCH-HHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHHHCC-CCCEE--EECCHHHHHHH
Q ss_conf -8777776-----------631-48999999997898-89999954797558999998519-98189--94698999999
Q gi|254781108|r 317 -SGASAYQ-----------NTL-NTLQICEYMRNAGM-KIYSVAVSAPPEGQDLLRKCTDS-SGQFF--AVNDSRELLES 379 (398)
Q Consensus 317 -~~~~~~~-----------~~~-~~~~~c~~~K~~gi-~IytIg~~~~~~~~~~l~~cAs~-~~~yy--~a~~~~~L~~a 379 (398)
|.+..+. ..+ ....+.+.+++++| .||.|.- ....+.+..+.- |+... -..+++.+.+.
T Consensus 268 pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~----~~~~~Y~~L~~~i~~s~vg~L~~dSsNiv~L 343 (461)
T 2vdr_B 268 PNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTE----NVVNLYQNYSELIPGTTVGVLSMDSSNVLQL 343 (461)
T ss_dssp CCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEG----GGHHHHHHHHTTSTTCEEEEESSCCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 887631537988766555577899999999998649679999655----3222689999746875367744773769999
Q ss_pred HHHHHHHHHHCEE
Q ss_conf 9999998751245
Q gi|254781108|r 380 FDKITDKIQEQSV 392 (398)
Q Consensus 380 F~~I~~~i~~~r~ 392 (398)
.++-.++|.+...
T Consensus 344 I~~aY~~i~s~v~ 356 (461)
T 2vdr_B 344 IVDAYGKIRSKVE 356 (461)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHHHHHCEEE
T ss_conf 9999987630799
No 23
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.18 E-value=4.7e-05 Score=47.39 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=56.3
Q ss_pred EEEEEECCCCCCCCCCCCCCC--CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 346541267765431123568--999999997357788874458899999996113466666566766665169981588
Q gi|254781108|r 237 RIGTIAYNIGIVGNQCTPLSN--NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDG 314 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~lt~--~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG 314 (398)
+...+.|++.... .+++. ........+..+ ++|+|+++.+|.|+.+.-. ....||++|||
T Consensus 405 ~~~vv~Fs~~~~~---v~l~~~~sl~~~~~~~~~~-~~ggT~~~~~l~~a~~~~~--------------~~D~iIllTD~ 466 (535)
T 2nvo_A 405 DALTMGFAEQFRP---LGITPRDTLESAMQKAQSV-SFGGTDCAQPILWAAQERL--------------DVDTFVVYTDN 466 (535)
T ss_dssp EEEEEEEBSSEEE---CCCCTTCCHHHHHHHTCCS-SBCCCCTTHHHHHHHHTTC--------------CCSEEEEEESS
T ss_pred CEEEEEECCCEEE---ECCCCCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCC--------------CCCEEEEEECC
T ss_conf 8079842796587---1788886499999998615-7899669999999985654--------------58989998089
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 778777776631489999999978988999995479
Q gi|254781108|r 315 ENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350 (398)
Q Consensus 315 ~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~ 350 (398)
+++.+.... ........+..+.+.++++|++...
T Consensus 467 e~~~g~~~p--~~al~~yr~~~~~~~klv~v~l~~~ 500 (535)
T 2nvo_A 467 ETWAGQVHP--TVALDQYAQKMGRAPKLIVVGLTAT 500 (535)
T ss_dssp CCCCCSSCH--HHHHHHHHHHHSCCCEEEEEETTCS
T ss_pred CCCCCCCCH--HHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 977899999--9999999997189971899980378
No 24
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.97 E-value=0.00052 Score=41.16 Aligned_cols=147 Identities=11% Similarity=0.081 Sum_probs=87.9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
--+++++|+|+||...... ..++.+..+.++..++...--.
T Consensus 8 eaiv~~iDvs~sM~~~~~~---------------------------------------~~s~~~~a~~~~~~~~~~ki~~ 48 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPG---------------------------------------IESPFEQAKKVITMFVQRQVFA 48 (565)
T ss_dssp EEEEEEEECCGGGGCCBTT---------------------------------------BCCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEECCHHHCCCCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 5199999898677676889---------------------------------------9997999999999999987338
Q ss_pred CCCCCCCCEEEEEEECCCCCCC------------CCCCCCC-CCHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHCCCCC
Q ss_conf 7687765213465412677654------------3112356-8999999997357788-874458899999996113466
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVG------------NQCTPLS-NNLNEVKSRLNKLNPY-ENTNTYPAMHHAYRELYNEKE 293 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~lt-~~~~~~~~~I~~l~~~-G~T~~~~gl~~a~~~l~~~~~ 293 (398)
. + ....+.+.|+..... ....++. -+...++...+.+.++ +.++...+|.++..+|.....
T Consensus 49 ~--~---~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l~~~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~~ 123 (565)
T 1jey_B 49 E--N---KDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETI 123 (565)
T ss_dssp T--C---CCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSS
T ss_pred C--C---CCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9--9---9879999980578887555445777559974588999999999986536887787879999999999998750
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 66656676666516998158877877777663148999999997898899999547
Q gi|254781108|r 294 SSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 294 ~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~ 349 (398)
..+..++.|||+|||+.+.. ......+.+.+++.||.+..|++..
T Consensus 124 ------~~k~~~~~Ivl~Td~~~p~~-----~~~~~~i~~~l~~~~i~L~vi~~~~ 168 (565)
T 1jey_B 124 ------GKKFEKRHIEIFTDLSSRFS-----KSQLDIIIHSLKKCDISLQFFLPFS 168 (565)
T ss_dssp ------SSCCSEEEEEEECCCCSCCC-----CTTHHHHHHHHHHTTEEEEEEESSC
T ss_pred ------CCCCCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf ------25556248999927998868-----7899999999986596699970366
No 25
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.77 E-value=0.0015 Score=38.35 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=47.0
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999735778887445889999999611346666656676666516998158877877777663148999999997
Q gi|254781108|r 258 NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRN 337 (398)
Q Consensus 258 ~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~ 337 (398)
....+...+..+ ++|||+++.+|.|+.+.-. ...++|++|||+++.+.... ......-.+-.+
T Consensus 429 ~l~~~~~~~~~~-~~ggT~~~~~i~~a~~~~~--------------~~D~~IvlTD~e~~~g~~~p--~~al~~Yr~k~~ 491 (538)
T 1yvr_A 429 LLHEVVEKMSDI-TMGSTDCALPMLWAQKTNT--------------AADIFIVFTDCETNVEDVHP--ATALKQYREKMG 491 (538)
T ss_dssp CHHHHHHHHTTC-CCSCCCTTHHHHHHHHTTC--------------CCSEEEEEECCCCCSSSCCH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-CCCCCCHHHHHHHHHHCCC--------------CCCEEEEEECCCCCCCCCCH--HHHHHHHHHHHC
T ss_conf 499999998436-7898618999999996155--------------68989998179977898899--999999999848
Q ss_pred CCCEEEEEEECC
Q ss_conf 898899999547
Q gi|254781108|r 338 AGMKIYSVAVSA 349 (398)
Q Consensus 338 ~gi~IytIg~~~ 349 (398)
.+.+++.|++..
T Consensus 492 ~~ak~v~v~l~~ 503 (538)
T 1yvr_A 492 IPAKLIVCAMTS 503 (538)
T ss_dssp CCCEEEEEECSS
T ss_pred CCCEEEEEECCC
T ss_conf 997599998568
No 26
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.71 E-value=0.00018 Score=43.92 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC------------
Q ss_conf 3112356899999999735778887445889-999999611346666656676666516998158877------------
Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYPA-MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN------------ 316 (398)
Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~g-l~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------ 316 (398)
...++||.+...+..+|++...+|+-...+| |.-.++.+.-...-.|+ + .+|++||.||...
T Consensus 183 ~~~~~lt~~~~~f~~~~~~~~~~~n~d~pe~~~da~~q~~~c~~~igwr--~---~~~~~~~~td~~~h~agdg~l~gi~ 257 (687)
T 3k6s_B 183 RHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWR--N---VTRLLVFATDDGFHFAGDGKLGAIL 257 (687)
T ss_dssp EEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCC--S---SCCEEEEECSSCCCCTTGGGGGTCC
T ss_pred EEECCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCCC--C---CEEEEEEECCCCCCCCCCCCCCEEC
T ss_conf 5422566778999998751670357768650166888877502223645--7---5489999816874426764231040
Q ss_pred --CCCC-------CCC---CCH-HHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHHHC-CCCCEE--EECCHHHHHHH
Q ss_conf --8777-------776---631-489999999978988-999995479755899999851-998189--94698999999
Q gi|254781108|r 317 --SGAS-------AYQ---NTL-NTLQICEYMRNAGMK-IYSVAVSAPPEGQDLLRKCTD-SSGQFF--AVNDSRELLES 379 (398)
Q Consensus 317 --~~~~-------~~~---~~~-~~~~~c~~~K~~gi~-IytIg~~~~~~~~~~l~~cAs-~~~~yy--~a~~~~~L~~a 379 (398)
|.+. |.. ..+ ....+-.++++++|. ||.|.= ....+.+..+. =|+... -+.+++.|.+.
T Consensus 258 ~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~----~~~~~y~~l~~~~~~~~~~~l~~ds~ni~~l 333 (687)
T 3k6s_B 258 TPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTS----RMVKTYEKLTEIIPKSAVGELSEDSSNVVQL 333 (687)
T ss_dssp CCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECG----GGHHHHHHHHHHSSSCCEEECCTTCCSCGGG
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 478873170488303566667789899999998649259999766----4443689999755775047614664779999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998751
Q gi|254781108|r 380 FDKITDKIQE 389 (398)
Q Consensus 380 F~~I~~~i~~ 389 (398)
+++-.++|.+
T Consensus 334 i~~~y~~i~s 343 (687)
T 3k6s_B 334 IKNAYNKLSS 343 (687)
T ss_dssp TTTHHHHHSS
T ss_pred HHHHHHHHHC
T ss_conf 9999986513
No 27
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A*
Probab=83.10 E-value=1.8 Score=19.94 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 874458899999996113466666566766665169981588778777776631489999999978988999995479
Q gi|254781108|r 273 ENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350 (398)
Q Consensus 273 G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~ 350 (398)
...+....|..+.+++.... .....|-|+|+||+++....-..........+..+++.||.|-.+.+..+
T Consensus 139 ~~~~l~~aL~~~~~~f~~~~--------~k~~~krI~lfTd~d~P~~~d~~~~~~~~~~~~dl~~~gI~i~~~~i~~~ 208 (609)
T 1jey_A 139 SDYSLSEVLWVCANLFSDVQ--------FKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp CCCCHHHHHHHHHHHHHTCS--------SCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CCCCHHHHHHHHHHHHHHHC--------CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 54469999999999998602--------02367579998689987888517799999999999970905777335788
No 28
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=49.20 E-value=9.9 Score=15.47 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++..|.-|.
T Consensus 186 tr~lA~e~~~~gIrVN~V~PG~ 207 (269)
T 3gk3_A 186 TKTLALETAKRGITVNTVSPGY 207 (269)
T ss_dssp HHHHHHHHGGGTEEEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999998865195898763485
No 29
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A*
Probab=44.52 E-value=12 Score=15.03 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCEEEEEEECC
Q ss_conf 999999997898899999547
Q gi|254781108|r 329 LQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 329 ~~~c~~~K~~gi~IytIg~~~ 349 (398)
..++.++...||++.+|.-|.
T Consensus 170 r~lA~e~~~~gIrVN~V~PG~ 190 (261)
T 1gee_A 170 ETLALEYAPKGIRVNNIGPGA 190 (261)
T ss_dssp HHHHHHHGGGTCEEEEEEECS
T ss_pred HHHHHHHHHHCCEEEEEEECC
T ss_conf 999999635491999996097
No 30
>3afn_B A1-R, 4-deoxy-L-erythro-5-hexoseulose-uronic acid reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=36.51 E-value=16 Score=14.27 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHHHHHHCCCEEEEEEECC
Q ss_conf 99999997898899999547
Q gi|254781108|r 330 QICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 330 ~~c~~~K~~gi~IytIg~~~ 349 (398)
.++.++...||++.+|.-|.
T Consensus 177 ~lA~e~~~~gIrVN~I~PG~ 196 (258)
T 3afn_B 177 NWVDFHTKDGVRFNIVSPGT 196 (258)
T ss_dssp HHHHHHGGGTEEEEEEEECS
T ss_pred HHHHHHCCCCEEEEEEECCC
T ss_conf 99998552584999996286
No 31
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reductase family; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8}
Probab=36.45 E-value=16 Score=14.26 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 8999999997898899999547975589999985199818994698999999999999
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITD 385 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I~~ 385 (398)
+..++.++...||++-+|.=|.= ..+++++. ++..+. -.++|+.++.-.+..
T Consensus 161 t~~la~el~~~gIrVn~I~PG~v--~T~~~~~~---~~~~~~-~~PediA~~i~~l~s 212 (234)
T 2ehd_A 161 AGAAMLDLREANVRVVNVLPGSV--DTGFAGNT---PGQAWK-LKPEDVAQAVLFALE 212 (234)
T ss_dssp HHHHHHHHGGGTEEEEEEECC----------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEEECCCC--CCCCCCCC---CCCCCC-CCHHHHHHHHHHHHC
T ss_conf 99999984812859999971889--77000078---877546-999999999999978
No 32
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=36.34 E-value=16 Score=14.25 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHHCCC------CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-----
Q ss_conf 1235689999999973577------88874458899999996113466666566766665169981588778777-----
Q gi|254781108|r 252 CTPLSNNLNEVKSRLNKLN------PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGAS----- 320 (398)
Q Consensus 252 ~~~lt~~~~~~~~~I~~l~------~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~----- 320 (398)
..++...+..+...++.|. ....|..+.++..+...+.....+ -|++++.+.+-+..+-
T Consensus 264 l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~~g----------Gkii~f~s~~P~~~gpg~l~~ 333 (770)
T 3efo_B 264 LVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP----------GKLFIFHSSLPTAEAPGKLKN 333 (770)
T ss_dssp SBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC----------EEEEEEECSCCCSSSTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC----------CEEEEEECCCCCCCCCCCCCC
T ss_conf 1208998999999986231220578888743899999999997156999----------639999657998888744446
Q ss_pred ---------------CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECC
Q ss_conf ---------------776631489999999978988999995479755899999851-9981899469
Q gi|254781108|r 321 ---------------AYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVND 372 (398)
Q Consensus 321 ---------------~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~ 372 (398)
+.....--..++..+.++||.|-...+..+..+-..|..++. ++|..|..++
T Consensus 334 r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 401 (770)
T 3efo_B 334 RDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNN 401 (770)
T ss_dssp CCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 54322357722343036217999999999998594699999448767879999999864966999689
No 33
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=33.24 E-value=18 Score=13.95 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=21.0
Q ss_pred HHHHCCCCCEEE-ECCHHHHHHHHHHHHHHHHHCEEE
Q ss_conf 998519981899-469899999999999987512457
Q gi|254781108|r 358 RKCTDSSGQFFA-VNDSRELLESFDKITDKIQEQSVR 393 (398)
Q Consensus 358 ~~cAs~~~~yy~-a~~~~~L~~aF~~I~~~i~~~r~~ 393 (398)
+.|.+.+|.|+. ...++ ++|+.|...|...+.|
T Consensus 73 Rrc~~G~G~f~f~t~~~~---~I~~~v~~~i~~~~~~ 106 (107)
T 2v76_A 73 RRCPSGPGTFTFQTAQGN---DIFQAVETAIHRQKAQ 106 (107)
T ss_dssp TTSTTCSEEEEEECSCHH---HHHHHHHHHHHHC---
T ss_pred CCCCCCCCEEEEECCCHH---HHHHHHHHHHHHHHHC
T ss_conf 898989827999828999---9999999999977646
No 34
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=31.74 E-value=19 Score=13.80 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++.+|.-|.
T Consensus 166 t~~lA~el~~~gIrVN~I~PG~ 187 (247)
T 2hq1_A 166 TKSIAKEFAAKGIYCNAVAPGI 187 (247)
T ss_dssp HHHHHHHHGGGTEEEEEEEECS
T ss_pred HHHHHHHHHCCCEEEEEEECCC
T ss_conf 9999999721496999985497
No 35
>3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=31.62 E-value=19 Score=13.79 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=12.7
Q ss_pred HHHHHH-HHCCCEEEEEEEC
Q ss_conf 999999-9789889999954
Q gi|254781108|r 330 QICEYM-RNAGMKIYSVAVS 348 (398)
Q Consensus 330 ~~c~~~-K~~gi~IytIg~~ 348 (398)
.++.++ .+.||++-+|.-|
T Consensus 169 ~lA~ela~~~gIrVN~I~PG 188 (257)
T 3imf_A 169 TLAVEWGRKYGIRVNAIAPG 188 (257)
T ss_dssp HHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHCCEEEEEEEC
T ss_conf 99999667559189999538
No 36
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=31.14 E-value=19 Score=13.74 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCEEEEEEEC
Q ss_conf 99999999789889999954
Q gi|254781108|r 329 LQICEYMRNAGMKIYSVAVS 348 (398)
Q Consensus 329 ~~~c~~~K~~gi~IytIg~~ 348 (398)
..++.++...||++.+|.-|
T Consensus 179 r~lA~el~~~gIrVN~I~PG 198 (278)
T 2bgk_A 179 TSLCTELGEYGIRVNCVSPY 198 (278)
T ss_dssp HHHHHHHGGGTEEEEEEEES
T ss_pred HHHHHHHHHHCCEEEEEECC
T ss_conf 99999862549099999619
No 37
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=29.51 E-value=21 Score=13.57 Aligned_cols=48 Identities=8% Similarity=0.208 Sum_probs=25.7
Q ss_pred CCCEEEEEEECCCCCH-HHHHHHHH-CCCCCEEEEC---CHHHHHHHHHHHHH
Q ss_conf 8988999995479755-89999985-1998189946---98999999999999
Q gi|254781108|r 338 AGMKIYSVAVSAPPEG-QDLLRKCT-DSSGQFFAVN---DSRELLESFDKITD 385 (398)
Q Consensus 338 ~gi~IytIg~~~~~~~-~~~l~~cA-s~~~~yy~a~---~~~~L~~aF~~I~~ 385 (398)
.+...|.|-||-+..+ .++.+..- ..+-..+.|. |+--|...+++|..
T Consensus 102 ~~~~~~aiVFG~~a~~~~E~~~~i~~~~~~e~i~arAfHNP~pl~~kidkvl~ 154 (157)
T 1kjn_A 102 LNTETLAIIFDRDADVLEELVNEIMETLDAEIIAARAHHNPAPLRVRIDRFME 154 (157)
T ss_dssp HCSEEEEEEECSCHHHHHHHHHHHHHHCCCEEEEECCSSCCHHHHHHHHHHHT
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 27874899933774358999986530389658984021586878999999851
No 38
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=29.43 E-value=21 Score=13.56 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=72.2
Q ss_pred CCCCCCCHHHHHHHHHCCC------CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC---
Q ss_conf 1235689999999973577------8887445889999999611346666656676666516998158877877777---
Q gi|254781108|r 252 CTPLSNNLNEVKSRLNKLN------PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAY--- 322 (398)
Q Consensus 252 ~~~lt~~~~~~~~~I~~l~------~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~--- 322 (398)
..++...+..+.+.++.+. ....+..+.++..+...+..... .-|++++.+.|-.+.+-..
T Consensus 260 l~~~~e~~~~i~~lL~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~~----------gG~ii~f~~s~P~t~GpG~l~~ 329 (766)
T 3eh2_A 260 LVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAEC----------AGKLFLFHTSLPIAEAPGKLKN 329 (766)
T ss_dssp SBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC----------CEEEEEEECSCCCSSSTTCCCC
T ss_pred EECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC----------CCCEEEEECCCCCCCCCCCCCC
T ss_conf 215588899999998736433468878875479999999999705577----------9848999516887789974204
Q ss_pred -----------------CCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECCH--H-HHHHHHH
Q ss_conf -----------------6631489999999978988999995479755899999851-99818994698--9-9999999
Q gi|254781108|r 323 -----------------QNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVNDS--R-ELLESFD 381 (398)
Q Consensus 323 -----------------~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~~--~-~L~~aF~ 381 (398)
....--..++..+..+||.|-...+..+..+-..|..++. ++|..|..++. + +.....+
T Consensus 330 ~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~dl~~l~~l~~~TGG~v~~~~~f~~~~~~~~l~~ 409 (766)
T 3eh2_A 330 RDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLS 409 (766)
T ss_dssp CCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf 43223457620133305625899999999998695799999548765879999998744955999689764222789999
Q ss_pred HHHHHH
Q ss_conf 999987
Q gi|254781108|r 382 KITDKI 387 (398)
Q Consensus 382 ~I~~~i 387 (398)
.+.+.+
T Consensus 410 ~l~~~~ 415 (766)
T 3eh2_A 410 DLRRDV 415 (766)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999975
No 39
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3itd_A
Probab=29.28 E-value=21 Score=13.54 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++..|.-|.
T Consensus 178 tk~lA~el~~~gIrVN~V~PG~ 199 (270)
T 3is3_A 178 VRIFSKDCGDKKITVNAVAPGG 199 (270)
T ss_dssp HHHHHHHHGGGTCEEEEEEECS
T ss_pred HHHHHHHHCCCCEEEEEEECCC
T ss_conf 9999998570492999996098
No 40
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B}
Probab=26.92 E-value=23 Score=13.29 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++..|.-|.
T Consensus 174 t~~lA~el~~~gIrVN~I~PG~ 195 (256)
T 3ezl_A 174 TMSLAQEVATKGVTVNTVSPGY 195 (256)
T ss_dssp HHHHHHHHGGGTEEEEEEEECS
T ss_pred HHHHHHHHHHHCEEEEEEEECC
T ss_conf 9999999706581799874276
No 41
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=26.77 E-value=23 Score=13.28 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++.+|.-|.
T Consensus 189 tr~lA~ela~~gIrVN~I~PG~ 210 (283)
T 1g0o_A 189 ARCMAIDMADKKITVNVVAPGG 210 (283)
T ss_dssp HHHHHHHHGGGTCEEEEEEECC
T ss_pred HHHHHHHHHHHCCEEEEEEECC
T ss_conf 9999999615396798883087
No 42
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=23.67 E-value=26 Score=12.92 Aligned_cols=57 Identities=2% Similarity=0.053 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC----C--CCEEEECCHHHHHHHHHHHHHH
Q ss_conf 99999999789889999954797558999998519----9--8189946989999999999998
Q gi|254781108|r 329 LQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDS----S--GQFFAVNDSRELLESFDKITDK 386 (398)
Q Consensus 329 ~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~----~--~~yy~a~~~~~L~~aF~~I~~~ 386 (398)
..++.+++..||.+.++... +.-...+++.--.. . -..-..-.++|+.+++-.++.+
T Consensus 167 ~~la~e~~~~gi~V~~~~~p-g~v~t~~~~~~~~~~~~~~~~~~~~~~~~PedIA~~v~fl~s~ 229 (252)
T 3h7a_A 167 QSMARELMPKNIHVAHLIID-SGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQ 229 (252)
T ss_dssp HHHHHHHGGGTEEEEEEEEC----------------------------CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999860658879999589-8738755554046665664126877781999999999999789
No 43
>3ijr_A Oxidoreductase, short chain dehydrogenase/reductase family; structural genomics, infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=22.30 E-value=28 Score=12.76 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++.+|.-|.
T Consensus 207 tr~lA~Ela~~gIrVN~I~PG~ 228 (291)
T 3ijr_A 207 TRSLSQSLVQKGIRVNGVAPGP 228 (291)
T ss_dssp HHHHHHHHGGGTCEEEEEEECS
T ss_pred HHHHHHHHHHCCEEEEEEECCC
T ss_conf 9999998633190899996488
No 44
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=22.16 E-value=28 Score=12.74 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++.+|.-|.
T Consensus 166 tr~lA~El~~~gIrVN~I~PG~ 187 (250)
T 2cfc_A 166 TKSVAVDYAGSGIRCNAVCPGM 187 (250)
T ss_dssp HHHHHHHHGGGTEEEEEEEECS
T ss_pred HHHHHHHHHHCCEEEEEEEECC
T ss_conf 9999999624095999961087
No 45
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=21.64 E-value=29 Score=12.68 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++.+|.-|.
T Consensus 163 tk~lA~el~~~gIrVN~I~PG~ 184 (256)
T 1geg_A 163 TQTAARDLAPLGITVNGYCPGI 184 (256)
T ss_dssp HHHHHHHHGGGTEEEEEEEECS
T ss_pred HHHHHHHHHHHCEEEEEEEECC
T ss_conf 9999998602290999996188
No 46
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp}
Probab=21.45 E-value=29 Score=12.65 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCEEEEEEECCC------CCHHHHHHHHHC-CCCCEEEECCHHHHHHHHHHHH
Q ss_conf 9999999978988999995479------755899999851-9981899469899999999999
Q gi|254781108|r 329 LQICEYMRNAGMKIYSVAVSAP------PEGQDLLRKCTD-SSGQFFAVNDSRELLESFDKIT 384 (398)
Q Consensus 329 ~~~c~~~K~~gi~IytIg~~~~------~~~~~~l~~cAs-~~~~yy~a~~~~~L~~aF~~I~ 384 (398)
..++.++...||++..|.-|.= .-..+..+.... .|-+ ..-.++|+.++..-++
T Consensus 166 ~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~--R~~~pedvA~~v~fL~ 226 (246)
T 3osu_A 166 KSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLA--RFGQDTDIANTVAFLA 226 (246)
T ss_dssp HHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCTTC--SCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEEECCCCCCCHHHHCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHH
T ss_conf 999999606684896663186667121204999999998569988--9979999999999995
No 47
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta-hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A*
Probab=21.43 E-value=29 Score=12.65 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCEEEEEEECC
Q ss_conf 999999997898899999547
Q gi|254781108|r 329 LQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 329 ~~~c~~~K~~gi~IytIg~~~ 349 (398)
..++.++...||++..|.-|.
T Consensus 167 k~lA~el~~~gIrVN~V~PG~ 187 (260)
T 1x1t_A 167 KVTALETAGQGITANAICPGW 187 (260)
T ss_dssp HHHHHHHTTTTEEEEEEEECC
T ss_pred HHHHHHHHHHCEEEEEEEECC
T ss_conf 999998532092999996097
No 48
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=21.32 E-value=24 Score=13.22 Aligned_cols=31 Identities=26% Similarity=0.651 Sum_probs=14.8
Q ss_pred HHHCCCCCE-EEECCHHHHHHHHHHHHHHHHHCEE
Q ss_conf 985199818-9946989999999999998751245
Q gi|254781108|r 359 KCTDSSGQF-FAVNDSRELLESFDKITDKIQEQSV 392 (398)
Q Consensus 359 ~cAs~~~~y-y~a~~~~~L~~aF~~I~~~i~~~r~ 392 (398)
.|.+.+|.| |...++++ +|+.|...|...+.
T Consensus 76 rc~~G~G~f~f~t~~~~~---If~~v~~~i~~~~~ 107 (127)
T 1p5t_A 76 RCPSGPGTFTFQTSQGND---IFQAVEAAIQQQKA 107 (127)
T ss_dssp TSTTCSEEEEEECSCHHH---HHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECCCHHH---HHHHHHHHHHHHHH
T ss_conf 678898079998489999---99999999997452
No 49
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=20.93 E-value=30 Score=12.59 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999997898899999547
Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~ 349 (398)
+..++.++...||++-+|.-|.
T Consensus 162 tk~lA~e~~~~gIrVN~I~PG~ 183 (244)
T 1edo_A 162 SKTAAREGASRNINVNVVCPGF 183 (244)
T ss_dssp HHHHHHHHHTTTEEEEEEEECS
T ss_pred HHHHHHHHCCCCEEEEEEECCC
T ss_conf 9999999640296999995188
No 50
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=20.11 E-value=31 Score=12.48 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCCEEEEEEECC
Q ss_conf 999999997898899999547
Q gi|254781108|r 329 LQICEYMRNAGMKIYSVAVSA 349 (398)
Q Consensus 329 ~~~c~~~K~~gi~IytIg~~~ 349 (398)
..++.++...||++.+|.-|.
T Consensus 171 k~lA~e~a~~gIrVN~I~PG~ 191 (255)
T 1fmc_A 171 RNMAFDLGEKNIRVNGIAPGA 191 (255)
T ss_dssp HHHHHHHHTTTEEEEEEEECS
T ss_pred HHHHHHHHHCCEEEEEEEECC
T ss_conf 999999631193999996098
Done!