HHSEARCH alignment of GI: 254781108 and SCOP domain: d1jeya2

Alignment
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.30  E-value=6.6e-12  Score=87.10  Aligned_cols=185  Identities=12%  Similarity=0.108  Sum_probs=106.1

Q ss_pred             CEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             13575055666666766631012331023012688765403101343220112555333410002456655410220276
Q gi|254781108|r  150 ICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQ  229 (398)
Q Consensus       150 i~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  229 (398)
                      +++++|.|+||.......                                      ...+......++..++..+-... 
T Consensus         5 ivf~ID~S~SM~~~d~~~--------------------------------------~~s~~~~~~~~~~~~~~~~i~~~-   45 (220)
T d1jeya2           5 LIFLVDASKAMFESQSED--------------------------------------ELTPFDMSIQCIQSVYISKIISS-   45 (220)
T ss_dssp             EEEEEECSGGGGCCCSSS--------------------------------------SCCHHHHHHHHHHHHHHHHHHTT-
T ss_pred             EEEEEECCCCCCCCCCCC--------------------------------------CCCHHHHHHHHHHHHHHHHHHCC-
T ss_conf             999998980307455678--------------------------------------87789999999999999985079-


Q ss_pred             CCCCCCEEEEEEECCCCCCCCC--------CCCCCCCHH-------------HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8776521346541267765431--------123568999-------------9999973577888744588999999961
Q gi|254781108|r  230 EKKNLSVRIGTIAYNIGIVGNQ--------CTPLSNNLN-------------EVKSRLNKLNPYENTNTYPAMHHAYREL  288 (398)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~--------~~~lt~~~~-------------~~~~~I~~l~~~G~T~~~~gl~~a~~~l  288 (398)
                       +   ..+.+.+.|+......+        ..++.....             ......+...+.|+|+++.+|..+.+.+
T Consensus        46 -~---~d~vglv~f~t~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~al~~a~~~~  121 (220)
T d1jeya2          46 -D---RDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLF  121 (220)
T ss_dssp             -C---CCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHH
T ss_pred             -C---CCEEEEEEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             -9---877999995466666877653035530134742889876655323444444320246788862999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC--H----HHHHHHHHC
Q ss_conf             1346666656676666516998158877877777663148999999997898899999547975--5----899999851
Q gi|254781108|r  289 YNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE--G----QDLLRKCTD  362 (398)
Q Consensus       289 ~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~--~----~~~l~~cAs  362 (398)
                      .....        ....|+|||+|||+++.+............+..+++.||.||+|+++.+..  .    .++++.- .
T Consensus       122 ~~~~~--------~~~~k~IiliTDg~~~~~~~~~~~~~~~~~a~~~~~~gv~i~~i~ig~~~~~d~~~f~~~~l~~~-~  192 (220)
T d1jeya2         122 SDVQF--------KMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIA-E  192 (220)
T ss_dssp             HTCSS--------CEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCCTTTTGGGTCC----
T ss_pred             HHCCC--------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHC-C
T ss_conf             74013--------45775899980599888885124577999988776306517999837878755116689987211-3


Q ss_pred             CCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf             998189946989999999999998
Q gi|254781108|r  363 SSGQFFAVNDSRELLESFDKITDK  386 (398)
Q Consensus       363 ~~~~yy~a~~~~~L~~aF~~I~~~  386 (398)
                      ++.+.+...+.++|.+..++|..+
T Consensus       193 ~~~~~~~~~~~~~l~~l~~~i~~k  216 (220)
T d1jeya2         193 DEDLRVHFEESSKLEDLLRKVRAK  216 (220)
T ss_dssp             -----CCCCCBCSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             666761068646699999999875


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku70 subunit N-terminal domain
domain: Ku70 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]