HHSEARCH alignment of GI: 254781108 and SCOP domain: d1q0pa_

Alignment
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80  E-value=2.5e-19  Score=131.58  Aligned_cols=191  Identities=21%  Similarity=0.238  Sum_probs=135.3

Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             54313575055666666766631012331023012688765403101343220112555333410002456655410220
Q gi|254781108|r  147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK  226 (398)
Q Consensus       147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  226 (398)
                      .+|+++++|.||||...                                             +.+..+.++..+++.+..
T Consensus         1 slDivfvlD~SgSm~~~---------------------------------------------~~~~~k~~~~~li~~l~~   35 (209)
T d1q0pa_           1 SMNIYLVLDGSDSIGAS---------------------------------------------NFTGAKKSLVNLIEKVAS   35 (209)
T ss_dssp             CEEEEEEEECSTTTCHH---------------------------------------------HHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHCCC
T ss_conf             90779999688998859---------------------------------------------999999999999996104


Q ss_pred             CCCCCCCCCEEEEEEECCCCCCCCC--CCCCCCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             2768776521346541267765431--1235689999999973577-----88874458899999996113466666566
Q gi|254781108|r  227 AIQEKKNLSVRIGTIAYNIGIVGNQ--CTPLSNNLNEVKSRLNKLN-----PYENTNTYPAMHHAYRELYNEKESSHNTI  299 (398)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~~I~~l~-----~~G~T~~~~gl~~a~~~l~~~~~~~~~~~  299 (398)
                      ..     ...+.+.+.|........  .....++...+...|+.+.     ++|+|++..||.++.+.+.........  
T Consensus        36 ~~-----~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~l~~~i~~i~~~~~~~~g~t~~~~al~~a~~~~~~~~~~~~~--  108 (209)
T d1q0pa_          36 YG-----VKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPE--  108 (209)
T ss_dssp             TT-----CCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCT--
T ss_pred             CC-----CCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC--
T ss_conf             78-----87679999965850588647651166789999999972101366788854989999999999752224765--


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCHHHHH-------HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEE
Q ss_conf             7666651699815887787777766314899-------9999997898899999547975589999985199---81899
Q gi|254781108|r  300 GSTRLKKFVIFITDGENSGASAYQNTLNTLQ-------ICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS---GQFFA  369 (398)
Q Consensus       300 ~~~~~~k~iillTDG~~~~~~~~~~~~~~~~-------~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~---~~yy~  369 (398)
                      ..++.+|++||+|||..+.+..+........       .+..++..||.||+||+|.+ .+...|+.+|+.+   ++||.
T Consensus       109 ~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~vgvg~~-~~~~~L~~iAs~~~~~~~~f~  187 (209)
T d1q0pa_         109 GWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVFK  187 (209)
T ss_dssp             TGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSC-CCHHHHHHHSCCCTTCCCEEE
T ss_pred             CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHCCCCCCEEEEE
T ss_conf             6677751899975787667898589999999854437899999866995598427766-899999999749899715999


Q ss_pred             ECCHHHHHHHHHHHHHHHHHC
Q ss_conf             469899999999999987512
Q gi|254781108|r  370 VNDSRELLESFDKITDKIQEQ  390 (398)
Q Consensus       370 a~~~~~L~~aF~~I~~~i~~~  390 (398)
                      +.+.++|.++|++|.++..++
T Consensus       188 ~~~~~~L~~~~~~ii~~~~s~  208 (209)
T d1q0pa_         188 VKDMENLEDVFYQMIDESQSL  208 (209)
T ss_dssp             TTC-----------------C
T ss_pred             ECCHHHHHHHHHHHHHHHCCC
T ss_conf             389999999999998852578


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]