HHSEARCH alignment of GI: 254781108 and SCOP domain: d1v7pc_

Alignment
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.74  E-value=1.4e-16  Score=115.21  Aligned_cols=178  Identities=19%  Similarity=0.227  Sum_probs=130.3

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r  148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA  227 (398)
Q Consensus       148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  227 (398)
                      +|+++++|.|+||..   +                                            +..|..+..++..+.-.
T Consensus         2 ~DivfvlD~S~Sv~~---f--------------------------------------------~~~k~f~~~ii~~~~i~   34 (193)
T d1v7pc_           2 IDVVVVCDESNSIYP---W--------------------------------------------DAVKNFLEKFVQGLDIG   34 (193)
T ss_dssp             EEEEEEEECCTTCCC---H--------------------------------------------HHHHHHHHHHHHTSCBS
T ss_pred             EEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHCCCC
T ss_conf             799999989998736---9--------------------------------------------99999999999972558


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             76877652134654126776543112356--899999999735778--88744588999999961134666665667666
Q gi|254781108|r  228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLS--NNLNEVKSRLNKLNP--YENTNTYPAMHHAYRELYNEKESSHNTIGSTR  303 (398)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~I~~l~~--~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~  303 (398)
                           ....|.+.+.|+....  ...+|+  .+...+..+|+.+.+  +|+|+++.+|.++.+.++...+..     .++
T Consensus        35 -----~~~~rv~vv~fs~~~~--~~~~l~~~~~~~~~~~~i~~~~~~~g~~t~~~~AL~~a~~~~f~~~~~~-----R~~  102 (193)
T d1v7pc_          35 -----PTKTQVGLIQYANNPR--VVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGG-----RRS  102 (193)
T ss_dssp             -----TTSEEEEEEEESSSEE--EEECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGTC-----CTT
T ss_pred             -----CCCCEEEEEEEECCEE--EEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC-----CCC
T ss_conf             -----8760799998520113--5504663036789999987444322576426889988887414612389-----888


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC--------CCHHHHHHHHHCCC--CCEEEECCH
Q ss_conf             65169981588778777776631489999999978988999995479--------75589999985199--818994698
Q gi|254781108|r  304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP--------PEGQDLLRKCTDSS--GQFFAVNDS  373 (398)
Q Consensus       304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~--------~~~~~~l~~cAs~~--~~yy~a~~~  373 (398)
                      .+|++||+|||..+.      .......+..+|+.||++|+||++..        ....+.|+.+|+.|  .|+|.+++.
T Consensus       103 ~~kvvVllTDG~s~d------~~~~~~~~~~~~~~gv~v~~Igvg~~~~~~~~~~~~~~~~L~~Ias~p~~~~~f~v~d~  176 (193)
T d1v7pc_         103 ATKVMVVVTDGESHD------GSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDE  176 (193)
T ss_dssp             SEEEEEEEESSCCSC------GGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSS
T ss_pred             CCEEEEEEECCCCCC------CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCH
T ss_conf             735899995687678------73689999999868989999996775444444441259999998669871018981899


Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999987512
Q gi|254781108|r  374 RELLESFDKITDKIQEQ  390 (398)
Q Consensus       374 ~~L~~aF~~I~~~i~~~  390 (398)
                      .+|.++.++|.++|.+.
T Consensus       177 ~~L~~i~~~l~~~Ic~~  193 (193)
T d1v7pc_         177 AALLEKAGTLGEQIFSI  193 (193)
T ss_dssp             GGGHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             99999999998651319


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha2-beta1
species: Human (Homo sapiens) [TaxId: 9606]