HHSEARCH alignment of GI: 254781108 and SCOP domain: d1yvra2

Alignment
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=98.65  E-value=8.5e-07  Score=56.44  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             34654126776543112356899999999735778887445889999999611346666656676666516998158877
Q gi|254781108|r  237 RIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN  316 (398)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~  316 (398)
                      +.+.+.|.+....-+ .........+...+... ++|||++..++.|+.+...              ..++|||+|||++
T Consensus        46 ~~~vv~F~~~~~~~~-~~~~~~~~~~~~~~~~~-~~ggT~i~~al~~a~~~~~--------------~~~~ivllTDg~~  109 (174)
T d1yvra2          46 DSHMVAFSDEMLPCP-ITVNMLLHEVVEKMSDI-TMGSTDCALPMLWAQKTNT--------------AADIFIVFTDCET  109 (174)
T ss_dssp             SEEEEEESSSEECCS-CCTTSCHHHHHHHHTTC-CCSCCCTTHHHHHHHHTTC--------------CCSEEEEEECCCC
T ss_pred             CEEEEEECCCCCCCC-CCCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHC--------------CCCEEEEEECCCC
T ss_conf             489999667740154-67311299999976325-6666308899999986301--------------5787999967875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             877777663148999999997898899999547
Q gi|254781108|r  317 SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSA  349 (398)
Q Consensus       317 ~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~  349 (398)
                      +.+....  ........+....+++++.|++..
T Consensus       110 ~~g~~~~--~~~l~~y~~~~~~~~~~~~i~l~~  140 (174)
T d1yvra2         110 NVEDVHP--ATALKQYREKMGIPAKLIVCAMTS  140 (174)
T ss_dssp             CSSSCCH--HHHHHHHHHHHTCCCEEEEEECSS
T ss_pred             CCCCCCH--HHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             6788798--999999998708994899998768


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]