RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
         (398 letters)



>1jey_A KU70; double-strand DNA break repair, non-homologous
           END-joining, protein/nucleic acid complex, alpha/beta
           domain, beta barrel; HET: DNA; 2.50A {Homo sapiens}
           (A:1-252)
          Length = 252

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 11/133 (8%), Positives = 38/133 (28%), Gaps = 19/133 (14%)

Query: 267 NKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTL 326
           + +    + +    +        + +    +        K ++  T+ +N   +      
Sbjct: 133 DMMGHGSDYSLSEVLWVCANLFSDVQFKMSH--------KRIMLFTNEDNPHGNDSAKAS 184

Query: 327 NTLQICEYMRNAGMKIYSVAVSAPPEGQ------DLLRKCTDSSGQFFAVNDSRELLESF 380
                   +R+ G+ +  + +  P          D++    D   +      S       
Sbjct: 185 RARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESS-----KL 239

Query: 381 DKITDKIQEQSVR 393
           + +  K++ +  R
Sbjct: 240 EDLLRKVRAKETR 252


>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus,
           CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A
           {Streptococcus pneumoniae}
           (A:221-279,A:318-447,A:506-585)
          Length = 269

 Score = 42.6 bits (99), Expect = 9e-05
 Identities = 24/218 (11%), Positives = 57/218 (26%), Gaps = 44/218 (20%)

Query: 202 APAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYN------------IGIVG 249
                 R+ +   E+  +L++ I        +   R+  + Y                  
Sbjct: 20  IRNKNARRAERAGEATRSLIDKI------TSDSENRVALVTYASTIDYSYLKLTNDKNDI 73

Query: 250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVI 309
            +         E       +  +  T T  A+  A   L  +   +         +K + 
Sbjct: 74  VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNS--------QKVIF 125

Query: 310 FITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRK---------C 360
            ITDG  + +              +  +   ++ +    +P +   LL            
Sbjct: 126 HITDGVPTMSYPINF-----NHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEH 180

Query: 361 TDSSGQFFAVNDSRELLESFDKIT----DKIQEQSVRI 394
           T   G   + +++ ++    D         I      +
Sbjct: 181 TIVRGDGQSNSNTAKITNHGDPTRWYYNGNIAPDGYDV 218



 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 18/271 (6%), Positives = 60/271 (22%), Gaps = 39/271 (14%)

Query: 148 ISICMVLDVSRSME---------------------DLYLQKHNDNNNMT--SNKYLLPPP 184
           + + ++LD S SM                      D       +   +   ++       
Sbjct: 5   LDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIDYSYL 64

Query: 185 PKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAG-NLVNSIQKAIQEKKNLSVRIGTIAY 243
              +  +         P  A  +    ++ +        ++ KA +     + R  +   
Sbjct: 65  KLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA-RQNSQKV 123

Query: 244 NIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303
              I     T          +         N     + +     L +    + +   +  
Sbjct: 124 IFHITDGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEHTIV 183

Query: 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP-------EGQDL 356
                      + +                 +   G  +++V +                
Sbjct: 184 RGDGQSNSNTAKITN----HGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSF 239

Query: 357 LRKCTDSSGQFFAVNDSRELLESFDKITDKI 387
           ++  +     +  V    +  +  +++    
Sbjct: 240 MQSISSKPENYTNVT---DTTKILEQLNRYF 267


>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
           admidas, membrane, integrin, titration, rossman fold,
           cell adhesion, transmembrane; NMR {Mus musculus} (A:)
          Length = 212

 Score = 36.1 bits (82), Expect = 0.008
 Identities = 25/250 (10%), Positives = 68/250 (27%), Gaps = 57/250 (22%)

Query: 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPA 204
           + ++ +  ++ +S S +                                           
Sbjct: 1   DNSVDLYFLMGLSGSAQG------------------------------------------ 18

Query: 205 PANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKS 264
                +  +     +L+ ++      + + S RIG  +    +       L+ + ++ + 
Sbjct: 19  ----HLSNVQTLGSDLLKALN-----EISRSGRIGFGSIVN-MTFQHILKLTADSSQFQR 68

Query: 265 RLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQN 324
            L K        T      A  ++                 +F++ +TD +   A     
Sbjct: 69  ELRKQLVSGKLATPKGQLDAVVQVAICLGEIGW----RNGTRFLVLVTDNDFHLAKDKTL 124

Query: 325 TLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384
                              S           L  K  +++ Q   V  S  ++++++K+T
Sbjct: 125 GTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPS-RMVKTYEKLT 183

Query: 385 DKIQEQSVRI 394
             I + ++  
Sbjct: 184 TFIPKLTIGE 193


>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine
           ladder, asparagine ladder, virulence factor, solenoid,
           cell WALL; 2.70A {Listeria monocytogenes} (A:)
          Length = 457

 Score = 33.0 bits (73), Expect = 0.066
 Identities = 4/30 (13%), Positives = 8/30 (26%), Gaps = 3/30 (10%)

Query: 120 LKGLIPSALTNLSLRS---TGIIERSSENL 146
           L    P+     +  +    G +    E  
Sbjct: 424 LSTDNPAVTYTFTSENGAIVGTVTTPFEAP 453



 Score = 26.8 bits (57), Expect = 4.5
 Identities = 3/17 (17%), Positives = 6/17 (35%)

Query: 116 ENLFLKGLIPSALTNLS 132
           EN  + G + +      
Sbjct: 438 ENGAIVGTVTTPFEAPQ 454


>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
           alternative splicing, glycoprotein, immune response,
           inflammatory response, innate immunity, membrane; HET:
           PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens}
           (A:)
          Length = 605

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 120 LKGLIPSALTNLSLRS 135
           ++   PS    + + S
Sbjct: 581 MECATPSDKQGMPVLS 596


>2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2,
           TLR1, lipopeptide, innate immunity, glycoprotein, immune
           response, inflammatory response, leucine-rich repeat,
           membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
           (B:1-484)
          Length = 484

 Score = 27.7 bits (59), Expect = 2.7
 Identities = 5/17 (29%), Positives = 7/17 (41%), Gaps = 1/17 (5%)

Query: 120 LKGLIPSALTNL-SLRS 135
           LK +       L SL+ 
Sbjct: 456 LKSVPDGIFDRLTSLQK 472


>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme-
           inhibitor complex, structural genomics, protein
           structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo
           sapiens} (W:)
          Length = 461

 Score = 27.2 bits (58), Expect = 4.0
 Identities = 5/68 (7%), Positives = 22/68 (32%), Gaps = 11/68 (16%)

Query: 124 IPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPP 183
           +   + +L ++   +    S+     +  +L   +  + + L     +  +T  +     
Sbjct: 1   MSLDIQSLDIQCEEL----SDARWAELLPLL---QQCQVVRLD----DCGLTEARCKDIS 49

Query: 184 PPKKSFWS 191
              +   +
Sbjct: 50  SALRVNPA 57


>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2,
           transcription factor, RNA polymerase recycling,
           activator, ATP-binding, DNA-binding; 3.20A {Escherichia
           coli K12} (A:150-424,A:686-712)
          Length = 302

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 214 IESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE 273
           ++ A +LV S     +E + +      +   + +     TP         +RL  L+P  
Sbjct: 130 VDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTA---TPEQLGXESHFARLRLLDPNR 186

Query: 274 NTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVI 309
             + +       +      ++    +   +L    +
Sbjct: 187 F-HDFAQFVEEQKNYCPVADAVAXLLAGNKLSNDEL 221


>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex,
           LRR, cell cycle/ligase/protein turnover complex; HET:
           TPO; 2.30A {Homo sapiens} (B:48-336)
          Length = 289

 Score = 26.8 bits (57), Expect = 5.0
 Identities = 2/16 (12%), Positives = 6/16 (37%)

Query: 120 LKGLIPSALTNLSLRS 135
           L   +   L +  + +
Sbjct: 12  LHPDVTGRLLSQGVIA 27


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} (F:1-76)
          Length = 76

 Score = 26.6 bits (58), Expect = 5.9
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 186 KKSFWSKNTTKSKYAPAPAPANRKIDVLIE 215
           K++      +   YA   APA   I   +E
Sbjct: 19  KQALKKLQASLKLYADDSAPA-LAIKATME 47


>1ls4_A Apolp-III, apolipophorin-III; helix-bundle, exchangeable
           apolipoprotein, lipid transport; NMR {Locusta
           migratoria} (A:)
          Length = 180

 Score = 26.1 bits (56), Expect = 7.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 191 SKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKN 233
           ++ + +  +AP  +      +   E+A NL NSIQ A+Q+  N
Sbjct: 138 TQASAQEAWAPVQSALQEAAEKTKEAAANLQNSIQSAVQKPAN 180


>1uf2_K Structural protein P7; virus components, icosahedral virus;
           3.50A {Rice dwarf virus} (K:)
          Length = 506

 Score = 26.1 bits (57), Expect = 8.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 55  TKKDQTSTIFKKQIKKHLKQGSY 77
           T  D    ++ + I KH+  GSY
Sbjct: 306 TDSDAYEKLYSETISKHVSDGSY 328


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0276    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,695,217
Number of extensions: 112341
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 21
Length of query: 398
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 308
Effective length of database: 1,913,599
Effective search space: 589388492
Effective search space used: 589388492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.8 bits)