RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509 Score = 59.5 bits (143), Expect = 1e-09 Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 19/197 (9%) Query: 208 RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYN--IGIVGNQCTPLSNNLNEVKSR 265 + ESA +V+ I ++V + I + ++ + S ++ EV S Sbjct: 25 NDFLIFKESASLMVDRIFSF-----EINVSVAIITFASEPKVLMSVLNDNSRDMTEVISS 79 Query: 266 LNKLNPYE-----NTNTYPAMHHAYRELYNEKESS-HNTIGSTRLKKFVIFITDGENSGA 319 L N + TNTY A++ Y + N+ T+ ++ +I +TDG+++ Sbjct: 80 LENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMG 139 Query: 320 SAYQNTLNTLQICEYM---RNAGMKIYSVAVSAPPEGQDLLRKC---TDSSGQFFAVNDS 373 + + ++ ++ + RN + IY++ V L + D F + D+ Sbjct: 140 GSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDT 199 Query: 374 RELLESFDKITDKIQEQ 390 + L + F+ + D + Sbjct: 200 KALHQVFEHMLDVSKLT 216 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Length = 741 Score = 56.4 bits (135), Expect = 1e-08 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 18/180 (10%) Query: 235 SVRIGTIAYN--IGIVGNQCTPLSNNLNEVKSRLNKLNPYE-----NTNTYPAMHHAYRE 287 R G + Y I S+N + V +LN++N + TNT A+ Y Sbjct: 281 KPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSM 340 Query: 288 LYNEKESSHNTIGSTRLKKFVIFITDGE-------NSGASAYQNTLNTLQICEYMRNAGM 340 + + G R + +I +TDG + ++ L + + R + Sbjct: 341 MSWPDD--VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 398 Query: 341 KIYSVAVSAPPEGQDLLR--KCTDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398 +Y V ++ D+ F V D L + F ++ D+ Q S+ Sbjct: 399 DVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWE 458 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Length = 198 Score = 53.7 bits (128), Expect = 8e-08 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 16/172 (9%) Query: 222 NSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPA 280 N ++ I + + S + + ++ + + S L ++ T T A Sbjct: 32 NFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATA 91 Query: 281 MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGM 340 + + L++ + K +I ITDG+ G ++L+ + AG+ Sbjct: 92 IQNVVHRLFHASYGARRDA-----AKILIVITDGKKEG-----DSLDYKDVIPMADAAGI 141 Query: 341 KIYSVAVSAPPEGQDLLRKCTD-----SSGQFFAVNDSRELLESFDKITDKI 387 Y++ V + ++ ++ D S F V D L + +++ +KI Sbjct: 142 IRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKI 193 >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Length = 194 Score = 51.0 bits (121), Expect = 4e-07 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 16/172 (9%) Query: 222 NSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPA 280 + +++ K + Y+ + N +S + + T+T Sbjct: 28 EFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATG 87 Query: 281 MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGM 340 + REL+N + K ++ ITDGE G + L + G+ Sbjct: 88 IRKVVRELFNITNGARKNA-----FKILVVITDGEKFG-----DPLGYEDVIPEADREGV 137 Query: 341 KIYSVAV---SAPPEGQDLLRKCTDSSGQ--FFAVNDSRELLESFDKITDKI 387 Y + V + + L + F VN+ L +++ +KI Sbjct: 138 IRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKI 189 >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223 Score = 46.8 bits (110), Expect = 9e-06 Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 23/200 (11%) Query: 208 RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAY--NIGIVGNQCTPLSNNLNEVKSR 265 +S NL+ + + R G + Y I S+N + V + Sbjct: 31 SNFTGAKKSLVNLIEKVASY-----GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQ 85 Query: 266 LNKLNPYE-----NTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN---- 316 LN++N + TNT A+ Y + + G R + +I +TDG + Sbjct: 86 LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV--PPEGWNRTRHVIILMTDGLHNMGG 143 Query: 317 ---SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLR--KCTDSSGQFFAVN 371 + ++ L + + R + +Y V ++ D+ F V Sbjct: 144 DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVK 203 Query: 372 DSRELLESFDKITDKIQEQS 391 D L + F ++ D+ Q S Sbjct: 204 DMENLEDVFYQMIDESQSLS 223 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Length = 213 Score = 45.9 bits (108), Expect = 2e-05 Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 31/201 (15%) Query: 208 RKIDV--LIESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTPL-------S 256 ++D+ +++ + + + +L + IG +GIV Sbjct: 6 TQLDIVIVLDGSNS-IYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKY 64 Query: 257 NNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN 316 ++ EV K+ T A+ E+ G KK ++ +TDGE+ Sbjct: 65 SSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGV---KKVMVIVTDGES 121 Query: 317 SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD----------SSGQ 366 + ++ + + ++ +S+A+ +L + + Sbjct: 122 HDNHRLK------KVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKH 175 Query: 367 FFAVNDSRELLESFDKITDKI 387 FF V+D L+ + ++I Sbjct: 176 FFNVSDELALVTIVKTLGERI 196 >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Length = 202 Score = 44.1 bits (103), Expect = 5e-05 Identities = 18/176 (10%), Positives = 51/176 (28%), Gaps = 13/176 (7%) Query: 214 IESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE 273 E V + + ++ + VR+ + Y+ + + S L ++ Sbjct: 31 FEVLKAFVVDMMERLRVSQK-WVRVAVVEYH----DGSHAYIGLKDRKRPSELRRIASQV 85 Query: 274 NTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICE 333 + Y + + ++ + E S N ++ + Sbjct: 86 KYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSR-----NFVRYVQ 140 Query: 334 YMRNAGMKIYSVAVSAPPEGQDLLRKCTD--SSGQFFAVNDSRELLESFDKITDKI 387 ++ + + V + +R + F ++ EL + D+I + Sbjct: 141 GLKKKKVIVIPVGIGPHAN-LKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYL 195 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 6e-04 Identities = 51/286 (17%), Positives = 83/286 (29%), Gaps = 140/286 (48%) Query: 2 TAIIISVC-----FLFITY-----AIDLAHIMYI--RNQM---QSALDAAVLS-----GC 41 TA+ I+ F + AI + + +I R ++L ++L Sbjct: 279 TAVAIAETDSWESF----FVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNE 332 Query: 42 AS---IVSDRTIKDPTTKKDQTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKN 98 ++S I + T ++Q++ ++ +K Sbjct: 333 GVPSPMLS---ISNLT----------QEQVQDYV-----------------------NKT 356 Query: 99 NPLQYIAESKAQYEI-----PTENLFLKGLIPSALT--NLSLRSTGIIERSSENLAISIC 151 N ++ K Q EI NL + G P +L NL+LR + S Sbjct: 357 N--SHLPAGK-QVEISLVNGAK-NLVVSGP-PQSLYGLNLTLRK---AKAPSG------- 401 Query: 152 MVLDVSR---SMEDLYLQKHNDNNNMTSNKYLLPPP---PKKSFWSKNTTKSKY-APAP- 203 LD SR S L SN++L P P F S PA Sbjct: 402 --LDQSRIPFSERKLKF----------SNRFL---PVASP---F------HSHLLVPASD 437 Query: 204 ------APANRKI---DVLI------------ESAGNLVNSIQKAI 228 N D+ I +G++ I I Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483 Score = 39.2 bits (91), Expect = 0.002 Identities = 22/193 (11%), Positives = 54/193 (27%), Gaps = 68/193 (35%) Query: 234 LSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELY--NE 291 L++ G++ + + + + S+L + + P +E Sbjct: 9 LTLSHGSLEHVL--------LVPTASFFIASQLQE----QFNKILPE---PTEGFAADDE 53 Query: 292 KESSHNTIGSTRLKKFVIFITDGENSGASAY-----QNTLNTLQICEYMRNAGMKIYSVA 346 + +G KF+ +++ L + Y+ I+++A Sbjct: 54 PTTPAELVG-----KFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGND--IHALA 105 Query: 347 VSAPPEG-------QDLLR--------------KCTDS-------SGQF--FAV-----N 371 E ++L++ K ++S G A+ N Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165 Query: 372 DS---RELLESFD 381 EL + + Sbjct: 166 TDDYFEELRDLYQ 178 Score = 33.8 bits (77), Expect = 0.079 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 62/222 (27%) Query: 49 TIKDPTTKKDQTSTIFKKQIKKHLKQGSY-IRENAGDIAQKAQINITKDKNNPLQYIAES 107 TI D K +T IFK +I +H SY R ++K ++ T+ P + E Sbjct: 1695 TIVD---GKLKTEKIFK-EINEH--STSYTFR------SEKGLLSATQ-FTQPALTLME- 1740 Query: 108 KAQYEIPTENLFLKGLIPSALT--NLSLRSTGIIERSSENLAI-SIC-------MVLDVS 157 KA +E +L KGLIP+ T SL + ++ ++I S+ M + V+ Sbjct: 1741 KAAFE----DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796 Query: 158 RSMEDLYLQKHNDNNNMTS-N-------------KYLLPPPPKKSFW-----SKNTTKSK 198 ++L N M + N +Y++ K++ W + N + Sbjct: 1797 VPRDEL----GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852 Query: 199 YAPAPAPANRKIDVLIESAGNLVNSI--QK--AIQEKKNLSV 236 Y A R +D + N++N I QK I+ +K+LS+ Sbjct: 1853 YVAAGDL--RALDTVT----NVLNFIKLQKIDIIELQKSLSL 1888 Score = 31.5 bits (71), Expect = 0.33 Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 79/190 (41%) Query: 245 IGIVGNQCTP------------LSNN-------LNEVK--SRLNKLNPY-ENTNTY-PAM 281 IG+ + P L NN L+ + ++ ++ Y TN++ PA Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQ-EQVQDYVNKTNSHLPAG 363 Query: 282 HHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSG--ASAYQNTLNTLQICEYMRNAG 339 L N + N V+ SG S Y LN +R Sbjct: 364 KQVEISLVN---GAKN---------LVV-------SGPPQSLY--GLNL-----TLRK-- 395 Query: 340 MKIYSVAVSAPPEGQDLLR--------KCTDSSGQFFAVN---DSRELLES-FDKITDKI 387 AP G D R K ++ +F V S LL D I + Sbjct: 396 -------AKAPS-GLDQSRIPFSERKLKFSN---RFLPVASPFHS-HLLVPASDLINKDL 443 Query: 388 QEQSVRIAPN 397 + +V Sbjct: 444 VKNNVSFNAK 453 >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Length = 200 Score = 39.5 bits (91), Expect = 0.001 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 35/201 (17%) Query: 210 IDV--LIESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTP-------LSNN 258 IDV + + + + + + + IG +G++ P Sbjct: 7 IDVVVVCDESNS-IYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKT 65 Query: 259 LNEVKSRLNKLNPYENT--NTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN 316 E+ ++ + Y NT+ A+ +A + Y+ + K ++ +TDGE+ Sbjct: 66 KEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSA-----TKVMVVVTDGES 120 Query: 317 SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSA--------PPEGQDLLRKCTDSSGQ-- 366 S + + + + + + +AV ++ + Sbjct: 121 HDGSMLK------AVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERY 174 Query: 367 FFAVNDSRELLESFDKITDKI 387 FF V+D LLE + ++I Sbjct: 175 FFNVSDEAALLEKAGTLGEQI 195 >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Length = 223 Score = 39.2 bits (90), Expect = 0.002 Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 32/210 (15%) Query: 200 APAPAPANRK-IDV--LIESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTP 254 + AP +D+ +++ + + + + I +L + IG +GIV Sbjct: 12 SFAPVQECSTQLDIVIVLDGSNS-IYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENV 70 Query: 255 -------LSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKF 307 ++ EV NK+ T A+ E+ G + Sbjct: 71 THEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKK---V 127 Query: 308 VIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD----- 362 ++ +TDGE+ + Q+ + + ++ +S+A+ +L + Sbjct: 128 MVIVTDGESHDNYRLK------QVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKS 181 Query: 363 -----SSGQFFAVNDSRELLESFDKITDKI 387 + FF V+D L+ + ++I Sbjct: 182 IASEPTEKHFFNVSDELALVTIVKALGERI 211 >3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Length = 1095 Score = 36.3 bits (83), Expect = 0.013 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 16/174 (9%) Query: 220 LVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP-YENTNTY 278 ++N ++ I + + S + + ++ + + S L ++ T T Sbjct: 151 MMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTA 210 Query: 279 PAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNA 338 A+ + L++ K +I ITDG+ G ++L+ + A Sbjct: 211 TAIQNVVHRLFHASYG-----ARRDAAKILIVITDGKKEG-----DSLDYKDVIPMADAA 260 Query: 339 GMKIYSVAVSAPPEGQDLLRKCTD-----SSGQFFAVNDSRELLESFDKITDKI 387 G+ Y++ V + ++ ++ D S F V D L + +++ +KI Sbjct: 261 GIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKI 314 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.3 bits (72), Expect = 0.22 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 12/39 (30%) Query: 323 QNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCT 361 + L LQ A +K+Y+ SAP L K T Sbjct: 19 KQALKKLQ-------ASLKLYA-DDSAPA----LAIKAT 45 >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Length = 178 Score = 32.1 bits (72), Expect = 0.26 Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 26/162 (16%) Query: 201 PAPAPANRKIDVLI---ESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQC--- 252 A ++D+ S + + + Q + IG N +V Sbjct: 9 RGSAMGTNQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH 68 Query: 253 --TPLSNNLNEVKSRLNKLN-----PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLK 305 L + K +TNT + + L+ + Sbjct: 69 LQWDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHV-----P 123 Query: 306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAV 347 K VI +TDGE+ T++ + +R G + +AV Sbjct: 124 KLVIGMTDGESDSD------FRTVRAAKEIRELGGIVTVLAV 159 >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3f78_A* ... Length = 179 Score = 31.8 bits (71), Expect = 0.27 Identities = 27/191 (14%), Positives = 69/191 (36%), Gaps = 25/191 (13%) Query: 209 KIDV--LIESAGNL-VNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTP--------LSN 257 +D+ L + + +L + QK + K++ + +Y V + Sbjct: 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVK 61 Query: 258 NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENS 317 + + + TNT+ A+++ E++ E+ + K +I ITDGE + Sbjct: 62 RKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDA-----TKVLIIITDGEAT 116 Query: 318 GASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQF-FAVNDSREL 376 + + + + + I + + L + + + +F ++ +L Sbjct: 117 DSGN-------IDAAKDIIRYIIGIGKHFQTKESQET-LHKFASKPASEFVKILDTFEKL 168 Query: 377 LESFDKITDKI 387 + ++ KI Sbjct: 169 KDLCTELQKKI 179 >3da4_A Colicin-M; phosphatase, antibiotic, antimicrobial, bacteriocin, plasmid, TONB box; 1.70A {Escherichia coli} PDB: 3da3_A Length = 279 Score = 30.3 bits (68), Expect = 0.76 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 91 INITKDKNNPLQYIAESKA--QYEIPTE---NLFLKGLIP-SALTNLSLRSTGIIERSSE 144 + I+ K N ++ I +S + + T+ +I + L N++L++ G + S+ Sbjct: 153 LKISPMKINQIKDIIKSGVVGTFPVSTKFTHATGDYNVITGAYLGNITLKTEGTLTISAN 212 Query: 145 N 145 Sbjct: 213 G 213 >1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ... Length = 260 Score = 30.1 bits (68), Expect = 1.0 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 9/66 (13%) Query: 163 LYLQKHN---------DNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVL 213 YLQ N ++ +N+ P P K+F + + P P +R I + Sbjct: 29 YYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALA 88 Query: 214 IESAGN 219 + Sbjct: 89 RTAVSE 94 >2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 Score = 28.1 bits (62), Expect = 3.4 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 218 GNLVNSIQKAIQEKKNLSVRI-----GTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPY 272 G + ++ +A++ K VR G I IG V L NL + L K P Sbjct: 143 GTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPT 202 Query: 273 ENTNTY 278 + Y Sbjct: 203 QAKGVY 208 >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 Score = 27.0 bits (59), Expect = 6.9 Identities = 10/67 (14%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 328 TLQICEYMRNAGMKIYSVAVSAP--PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITD 385 T + + +++ G ++ V +P P + L+R ++ + + E +E K+ Sbjct: 336 TFWVTKMLQDDG--VFVNPVVSPAVPAEESLIRFSLMATHTY---DQIDEAIEKMVKVFK 390 Query: 386 KIQEQSV 392 + + +++ Sbjct: 391 QAEVETL 397 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.129 0.359 Gapped Lambda K H 0.267 0.0494 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,107,476 Number of extensions: 135619 Number of successful extensions: 398 Number of sequences better than 10.0: 1 Number of HSP's gapped: 395 Number of HSP's successfully gapped: 29 Length of query: 398 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 304 Effective length of database: 3,414,294 Effective search space: 1037945376 Effective search space used: 1037945376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 58 (26.7 bits)