RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
         (398 letters)



>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human
           complement system, glycoprotein, SP, VWFA, hydrolase;
           HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A*
           2i6s_A*
          Length = 509

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 37/197 (18%), Positives = 80/197 (40%), Gaps = 19/197 (9%)

Query: 208 RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYN--IGIVGNQCTPLSNNLNEVKSR 265
               +  ESA  +V+ I         ++V +  I +     ++ +     S ++ EV S 
Sbjct: 25  NDFLIFKESASLMVDRIFSF-----EINVSVAIITFASEPKVLMSVLNDNSRDMTEVISS 79

Query: 266 LNKLNPYE-----NTNTYPAMHHAYRELYNEKESS-HNTIGSTRLKKFVIFITDGENSGA 319
           L   N  +      TNTY A++  Y  + N+       T+    ++  +I +TDG+++  
Sbjct: 80  LENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMG 139

Query: 320 SAYQNTLNTLQICEYM---RNAGMKIYSVAVSAPPEGQDLLRKC---TDSSGQFFAVNDS 373
            + +  ++ ++    +   RN  + IY++ V         L +     D     F + D+
Sbjct: 140 GSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDT 199

Query: 374 RELLESFDKITDKIQEQ 390
           + L + F+ + D  +  
Sbjct: 200 KALHQVFEHMLDVSKLT 216


>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
           complement system, convertase, complement alternate
           pathway, complement pathway; HET: NAG P6G; 2.20A {Homo
           sapiens} PDB: 3hs0_D* 2ok5_A*
          Length = 741

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 18/180 (10%)

Query: 235 SVRIGTIAYN--IGIVGNQCTPLSNNLNEVKSRLNKLNPYE-----NTNTYPAMHHAYRE 287
             R G + Y     I        S+N + V  +LN++N  +      TNT  A+   Y  
Sbjct: 281 KPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSM 340

Query: 288 LYNEKESSHNTIGSTRLKKFVIFITDGE-------NSGASAYQNTLNTLQICEYMRNAGM 340
           +    +      G  R +  +I +TDG         +     ++ L   +  +  R   +
Sbjct: 341 MSWPDD--VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL 398

Query: 341 KIYSVAVSAPPEGQDLLR--KCTDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398
            +Y   V       ++       D+    F V D   L + F ++ D+ Q  S+      
Sbjct: 399 DVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWE 458


>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
           {Homo sapiens} SCOP: c.62.1.1
          Length = 198

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 222 NSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPA 280
           N ++  I + +  S +   + ++     +         +   S L  ++     T T  A
Sbjct: 32  NFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATA 91

Query: 281 MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGM 340
           + +    L++    +          K +I ITDG+  G     ++L+   +      AG+
Sbjct: 92  IQNVVHRLFHASYGARRDA-----AKILIVITDGKKEG-----DSLDYKDVIPMADAAGI 141

Query: 341 KIYSVAVSAPPEGQDLLRKCTD-----SSGQFFAVNDSRELLESFDKITDKI 387
             Y++ V    + ++  ++  D     S    F V D   L +  +++ +KI
Sbjct: 142 IRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKI 193


>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
           c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1
           1bho_1 1idn_1
          Length = 194

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 16/172 (9%)

Query: 222 NSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN-PYENTNTYPA 280
             +   +++ K        + Y+     +       N    +S +  +      T+T   
Sbjct: 28  EFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATG 87

Query: 281 MHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGM 340
           +    REL+N    +          K ++ ITDGE  G     + L    +       G+
Sbjct: 88  IRKVVRELFNITNGARKNA-----FKILVVITDGEKFG-----DPLGYEDVIPEADREGV 137

Query: 341 KIYSVAV---SAPPEGQDLLRKCTDSSGQ--FFAVNDSRELLESFDKITDKI 387
             Y + V       + +  L        +   F VN+   L    +++ +KI
Sbjct: 138 IRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKI 189


>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A
           domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
          Length = 223

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 23/200 (11%)

Query: 208 RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAY--NIGIVGNQCTPLSNNLNEVKSR 265
                  +S  NL+  +         +  R G + Y     I        S+N + V  +
Sbjct: 31  SNFTGAKKSLVNLIEKVASY-----GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQ 85

Query: 266 LNKLNPYE-----NTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN---- 316
           LN++N  +      TNT  A+   Y  +    +      G  R +  +I +TDG +    
Sbjct: 86  LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV--PPEGWNRTRHVIILMTDGLHNMGG 143

Query: 317 ---SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLR--KCTDSSGQFFAVN 371
              +     ++ L   +  +  R   + +Y   V       ++       D+    F V 
Sbjct: 144 DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVK 203

Query: 372 DSRELLESFDKITDKIQEQS 391
           D   L + F ++ D+ Q  S
Sbjct: 204 DMENLEDVFYQMIDESQSLS 223


>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo
           sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A
           1mhp_A
          Length = 213

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 31/201 (15%)

Query: 208 RKIDV--LIESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTPL-------S 256
            ++D+  +++ + + +           +L   + IG     +GIV               
Sbjct: 6   TQLDIVIVLDGSNS-IYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKY 64

Query: 257 NNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN 316
           ++  EV     K+       T  A+           E+     G    KK ++ +TDGE+
Sbjct: 65  SSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGV---KKVMVIVTDGES 121

Query: 317 SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD----------SSGQ 366
                 +      ++ +   +  ++ +S+A+       +L  +             +   
Sbjct: 122 HDNHRLK------KVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKH 175

Query: 367 FFAVNDSRELLESFDKITDKI 387
           FF V+D   L+     + ++I
Sbjct: 176 FFNVSDELALVTIVKTLGERI 196


>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
           1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
           1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
           1u0o_C
          Length = 202

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 18/176 (10%), Positives = 51/176 (28%), Gaps = 13/176 (7%)

Query: 214 IESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE 273
            E     V  + + ++  +   VR+  + Y+          +     +  S L ++    
Sbjct: 31  FEVLKAFVVDMMERLRVSQK-WVRVAVVEYH----DGSHAYIGLKDRKRPSELRRIASQV 85

Query: 274 NTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICE 333
                     +    Y   +           +  ++ +   E    S      N ++  +
Sbjct: 86  KYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSR-----NFVRYVQ 140

Query: 334 YMRNAGMKIYSVAVSAPPEGQDLLRKCTD--SSGQFFAVNDSRELLESFDKITDKI 387
            ++   + +  V +         +R         + F ++   EL +  D+I   +
Sbjct: 141 GLKKKKVIVIPVGIGPHAN-LKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYL 195


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 51/286 (17%), Positives = 83/286 (29%), Gaps = 140/286 (48%)

Query: 2   TAIIISVC-----FLFITY-----AIDLAHIMYI--RNQM---QSALDAAVLS-----GC 41
           TA+ I+       F    +     AI +  + +I  R       ++L  ++L        
Sbjct: 279 TAVAIAETDSWESF----FVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNE 332

Query: 42  AS---IVSDRTIKDPTTKKDQTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKN 98
                ++S   I + T          ++Q++ ++                       +K 
Sbjct: 333 GVPSPMLS---ISNLT----------QEQVQDYV-----------------------NKT 356

Query: 99  NPLQYIAESKAQYEI-----PTENLFLKGLIPSALT--NLSLRSTGIIERSSENLAISIC 151
           N   ++   K Q EI        NL + G  P +L   NL+LR     +  S        
Sbjct: 357 N--SHLPAGK-QVEISLVNGAK-NLVVSGP-PQSLYGLNLTLRK---AKAPSG------- 401

Query: 152 MVLDVSR---SMEDLYLQKHNDNNNMTSNKYLLPPP---PKKSFWSKNTTKSKY-APAP- 203
             LD SR   S   L            SN++L   P   P   F       S    PA  
Sbjct: 402 --LDQSRIPFSERKLKF----------SNRFL---PVASP---F------HSHLLVPASD 437

Query: 204 ------APANRKI---DVLI------------ESAGNLVNSIQKAI 228
                    N      D+ I              +G++   I   I
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483



 Score = 39.2 bits (91), Expect = 0.002
 Identities = 22/193 (11%), Positives = 54/193 (27%), Gaps = 68/193 (35%)

Query: 234 LSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELY--NE 291
           L++  G++ + +         +      + S+L +    +     P            +E
Sbjct: 9   LTLSHGSLEHVL--------LVPTASFFIASQLQE----QFNKILPE---PTEGFAADDE 53

Query: 292 KESSHNTIGSTRLKKFVIFITDGENSGASAY-----QNTLNTLQICEYMRNAGMKIYSVA 346
             +    +G     KF+ +++                  L   +   Y+      I+++A
Sbjct: 54  PTTPAELVG-----KFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGND--IHALA 105

Query: 347 VSAPPEG-------QDLLR--------------KCTDS-------SGQF--FAV-----N 371
                E        ++L++              K ++S        G     A+     N
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165

Query: 372 DS---RELLESFD 381
                 EL + + 
Sbjct: 166 TDDYFEELRDLYQ 178



 Score = 33.8 bits (77), Expect = 0.079
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 62/222 (27%)

Query: 49   TIKDPTTKKDQTSTIFKKQIKKHLKQGSY-IRENAGDIAQKAQINITKDKNNPLQYIAES 107
            TI D    K +T  IFK +I +H    SY  R      ++K  ++ T+    P   + E 
Sbjct: 1695 TIVD---GKLKTEKIFK-EINEH--STSYTFR------SEKGLLSATQ-FTQPALTLME- 1740

Query: 108  KAQYEIPTENLFLKGLIPSALT--NLSLRSTGIIERSSENLAI-SIC-------MVLDVS 157
            KA +E    +L  KGLIP+  T    SL     +   ++ ++I S+        M + V+
Sbjct: 1741 KAAFE----DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796

Query: 158  RSMEDLYLQKHNDNNNMTS-N-------------KYLLPPPPKKSFW-----SKNTTKSK 198
               ++L       N  M + N             +Y++    K++ W     + N    +
Sbjct: 1797 VPRDEL----GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852

Query: 199  YAPAPAPANRKIDVLIESAGNLVNSI--QK--AIQEKKNLSV 236
            Y  A     R +D +     N++N I  QK   I+ +K+LS+
Sbjct: 1853 YVAAGDL--RALDTVT----NVLNFIKLQKIDIIELQKSLSL 1888



 Score = 31.5 bits (71), Expect = 0.33
 Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 79/190 (41%)

Query: 245 IGIVGNQCTP------------LSNN-------LNEVK--SRLNKLNPY-ENTNTY-PAM 281
           IG+   +  P            L NN       L+ +   ++  ++  Y   TN++ PA 
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQ-EQVQDYVNKTNSHLPAG 363

Query: 282 HHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSG--ASAYQNTLNTLQICEYMRNAG 339
                 L N    + N          V+       SG   S Y   LN       +R   
Sbjct: 364 KQVEISLVN---GAKN---------LVV-------SGPPQSLY--GLNL-----TLRK-- 395

Query: 340 MKIYSVAVSAPPEGQDLLR--------KCTDSSGQFFAVN---DSRELLES-FDKITDKI 387
                    AP  G D  R        K ++   +F  V     S  LL    D I   +
Sbjct: 396 -------AKAPS-GLDQSRIPFSERKLKFSN---RFLPVASPFHS-HLLVPASDLINKDL 443

Query: 388 QEQSVRIAPN 397
            + +V     
Sbjct: 444 VKNNVSFNAK 453


>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell
           adhesion, glycoprotein, toxin/cell adhesion complex;
           HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB:
           1aox_A 1dzi_A
          Length = 200

 Score = 39.5 bits (91), Expect = 0.001
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 35/201 (17%)

Query: 210 IDV--LIESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTP-------LSNN 258
           IDV  + + + + +          +     + IG     +G++     P           
Sbjct: 7   IDVVVVCDESNS-IYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKT 65

Query: 259 LNEVKSRLNKLNPYENT--NTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN 316
             E+    ++ + Y     NT+ A+ +A +  Y+       +       K ++ +TDGE+
Sbjct: 66  KEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSA-----TKVMVVVTDGES 120

Query: 317 SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSA--------PPEGQDLLRKCTDSSGQ-- 366
              S  +       + +   +  +  + +AV                 ++       +  
Sbjct: 121 HDGSMLK------AVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERY 174

Query: 367 FFAVNDSRELLESFDKITDKI 387
           FF V+D   LLE    + ++I
Sbjct: 175 FFNVSDEAALLEKAGTLGEQI 195


>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex,
           immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
          Length = 223

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 32/210 (15%)

Query: 200 APAPAPANRK-IDV--LIESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTP 254
           + AP       +D+  +++ + + +   +  I    +L   + IG     +GIV      
Sbjct: 12  SFAPVQECSTQLDIVIVLDGSNS-IYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENV 70

Query: 255 -------LSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKF 307
                    ++  EV    NK+       T  A+           E+     G  +    
Sbjct: 71  THEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKK---V 127

Query: 308 VIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD----- 362
           ++ +TDGE+      +      Q+ +   +  ++ +S+A+       +L  +        
Sbjct: 128 MVIVTDGESHDNYRLK------QVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKS 181

Query: 363 -----SSGQFFAVNDSRELLESFDKITDKI 387
                +   FF V+D   L+     + ++I
Sbjct: 182 IASEPTEKHFFNVSDELALVTIVKALGERI 211


>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule,
           calcium, cell adhesion, disulfide bond, glycoprotein,
           magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens}
           PDB: 3k71_A* 3k72_A*
          Length = 1095

 Score = 36.3 bits (83), Expect = 0.013
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 220 LVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP-YENTNTY 278
           ++N ++  I + +  S +   + ++     +         +   S L  ++     T T 
Sbjct: 151 MMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTA 210

Query: 279 PAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNA 338
            A+ +    L++               K +I ITDG+  G     ++L+   +      A
Sbjct: 211 TAIQNVVHRLFHASYG-----ARRDAAKILIVITDGKKEG-----DSLDYKDVIPMADAA 260

Query: 339 GMKIYSVAVSAPPEGQDLLRKCTD-----SSGQFFAVNDSRELLESFDKITDKI 387
           G+  Y++ V    + ++  ++  D     S    F V D   L +  +++ +KI
Sbjct: 261 GIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKI 314


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 12/39 (30%)

Query: 323 QNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCT 361
           +  L  LQ       A +K+Y+   SAP     L  K T
Sbjct: 19  KQALKKLQ-------ASLKLYA-DDSAPA----LAIKAT 45


>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
           {Toxoplasma gondii}
          Length = 178

 Score = 32.1 bits (72), Expect = 0.26
 Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 26/162 (16%)

Query: 201 PAPAPANRKIDVLI---ESAGNLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQC--- 252
              A    ++D+      S    + + +   Q        + IG    N  +V       
Sbjct: 9   RGSAMGTNQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH 68

Query: 253 --TPLSNNLNEVKSRLNKLN-----PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLK 305
               L +     K               +TNT   +    + L+         +      
Sbjct: 69  LQWDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHV-----P 123

Query: 306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAV 347
           K VI +TDGE+           T++  + +R  G  +  +AV
Sbjct: 124 KLVIGMTDGESDSD------FRTVRAAKEIRELGGIVTVLAV 159


>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia
           coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I
           1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A*
           1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A*
           2o7n_A* 3f78_A* ...
          Length = 179

 Score = 31.8 bits (71), Expect = 0.27
 Identities = 27/191 (14%), Positives = 69/191 (36%), Gaps = 25/191 (13%)

Query: 209 KIDV--LIESAGNL-VNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTP--------LSN 257
            +D+  L + + +L  +  QK +   K++  +    +Y    V    +            
Sbjct: 2   NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVK 61

Query: 258 NLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENS 317
             +      +  +    TNT+ A+++   E++ E+  +          K +I ITDGE +
Sbjct: 62  RKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDA-----TKVLIIITDGEAT 116

Query: 318 GASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQF-FAVNDSREL 376
            +         +   + +    + I     +   +   L +  +  + +F   ++   +L
Sbjct: 117 DSGN-------IDAAKDIIRYIIGIGKHFQTKESQET-LHKFASKPASEFVKILDTFEKL 168

Query: 377 LESFDKITDKI 387
            +   ++  KI
Sbjct: 169 KDLCTELQKKI 179


>3da4_A Colicin-M; phosphatase, antibiotic, antimicrobial, bacteriocin,
           plasmid, TONB box; 1.70A {Escherichia coli} PDB: 3da3_A
          Length = 279

 Score = 30.3 bits (68), Expect = 0.76
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 91  INITKDKNNPLQYIAESKA--QYEIPTE---NLFLKGLIP-SALTNLSLRSTGIIERSSE 144
           + I+  K N ++ I +S     + + T+         +I  + L N++L++ G +  S+ 
Sbjct: 153 LKISPMKINQIKDIIKSGVVGTFPVSTKFTHATGDYNVITGAYLGNITLKTEGTLTISAN 212

Query: 145 N 145
            
Sbjct: 213 G 213


>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton
           transfer pathway, revertant, X-RAY crystallography; HET:
           BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter
           sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H*
           1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H*
           1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H*
           1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
          Length = 260

 Score = 30.1 bits (68), Expect = 1.0
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 163 LYLQKHN---------DNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVL 213
            YLQ  N         ++    +N+   P P  K+F   +   +   P P   +R I + 
Sbjct: 29  YYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALA 88

Query: 214 IESAGN 219
             +   
Sbjct: 89  RTAVSE 94


>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein,
           nucleotide-binding, protein biosynthesis, translation,
           zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB:
           3fik_5 3kcr_5 2rdo_9 2gya_2 2gyc_2
          Length = 234

 Score = 28.1 bits (62), Expect = 3.4
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 218 GNLVNSIQKAIQEKKNLSVRI-----GTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPY 272
           G +  ++ +A++  K   VR      G I   IG V      L  NL  +   L K  P 
Sbjct: 143 GTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPT 202

Query: 273 ENTNTY 278
           +    Y
Sbjct: 203 QAKGVY 208


>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
           I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A
           {Sphingobacterium multivorum}
          Length = 398

 Score = 27.0 bits (59), Expect = 6.9
 Identities = 10/67 (14%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 328 TLQICEYMRNAGMKIYSVAVSAP--PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITD 385
           T  + + +++ G  ++   V +P  P  + L+R    ++  +   +   E +E   K+  
Sbjct: 336 TFWVTKMLQDDG--VFVNPVVSPAVPAEESLIRFSLMATHTY---DQIDEAIEKMVKVFK 390

Query: 386 KIQEQSV 392
           + + +++
Sbjct: 391 QAEVETL 397


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0494    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,107,476
Number of extensions: 135619
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 29
Length of query: 398
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 304
Effective length of database: 3,414,294
Effective search space: 1037945376
Effective search space used: 1037945376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.7 bits)