BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A
[Candidatus Liberibacter asiaticus str. psy62]
         (398 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 398

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/398 (100%), Positives = 398/398 (100%)

Query: 1   MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
           MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT
Sbjct: 1   MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60

Query: 61  STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL 120
           STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL
Sbjct: 61  STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL 120

Query: 121 KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL 180
           KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL
Sbjct: 121 KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL 180

Query: 181 LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT 240
           LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT
Sbjct: 181 LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT 240

Query: 241 IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG 300
           IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG
Sbjct: 241 IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG 300

Query: 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC 360
           STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC
Sbjct: 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC 360

Query: 361 TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398
           TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR
Sbjct: 361 TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398


>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 94.7 bits (234), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 185/401 (46%), Gaps = 62/401 (15%)

Query: 1   MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
           +TAI++ V F+ +   I+ +H  +++ ++   LD ++L     I++     +   +K+  
Sbjct: 20  LTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGNNGKKQKNDF 79

Query: 61  S-----TIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115
           S      I++   +  L++  +  ++  +I +   ++I  D  +   Y   + ++YE+P 
Sbjct: 80  SYRIIKNIWQTDFRNELRENGF-AQDINNIERSTSLSIIIDDQHK-DYNLSAVSRYEMP- 136

Query: 116 ENLFLKGLIPSAL--TNLSLRSTGIIERSSE-NLAISICMVLDVSRSMEDLYLQKHNDNN 172
              F+    P     ++  L  T  ++ SS+ ++ + + MVLDVS SM D +        
Sbjct: 137 ---FIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHF-------- 185

Query: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232
                                           P   K+ V   S   +++ I K+I +  
Sbjct: 186 -------------------------------GPGMDKLGVATRSIREMLDII-KSIPDVN 213

Query: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEK 292
           N+ VR G + ++  IV  Q  PL+  +  ++ ++N+L     T + P + +AY ++++ K
Sbjct: 214 NV-VRSGLVTFSSKIV--QTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAK 270

Query: 293 ES-SHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP 351
           E   H   G    KK++IF+TDGENS  +   +   +L  C   +  G  +Y++ V A  
Sbjct: 271 EKLEHIAKGHDDYKKYIIFLTDGENSSPNI--DNKESLFYCNEAKRRGAIVYAIGVQAEA 328

Query: 352 EGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392
             Q  L+ C  S  +F++V +SR+L ++F +I  ++ +Q +
Sbjct: 329 ADQ-FLKNCA-SPDRFYSVQNSRKLHDAFLRIGKEMVKQRI 367


>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 420

 Score = 69.7 bits (169), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 11/118 (9%)

Query: 275 TNTYPAMHHAYRELYNEKESSHNT--------IGSTRLKKFVIFITDGENSGASAYQNTL 326
           T++ PAM  AY+ L ++K+ S  T        I S   +KF+IF+TDGEN+    +++ +
Sbjct: 292 TDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN---FKSNV 348

Query: 327 NTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384
           NT++IC+  +   +KI +++++A P GQ LL+ C  S    + V ++  L+  F  I+
Sbjct: 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNIS 406



 Score = 31.2 bits (69), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 12  FITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVS------DR--TIKDPTTKK--DQTS 61
           F+ Y +D     Y +N M+SA +AA+L+G + +VS      DR  +I +   +   D   
Sbjct: 39  FLIYVLDWH---YKKNSMESANNAAILAGASKMVSNLSRLGDRFESISNHAKRALIDDAK 95

Query: 62  TIFKKQIKKHLKQGSYIRENA--GDIAQKAQINITKDKNNPL 101
              K  IK+ L   S +  N    +I   ++I++T   NN L
Sbjct: 96  RFIKNHIKESLSGYSAVFYNTEIQNIVNSSRISMTHMANNRL 137


>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 374

 Score = 61.2 bits (147), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 171/402 (42%), Gaps = 63/402 (15%)

Query: 1   MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKD-- 58
           +TAI + + FL +   I+++HI +++  + S +D +++     I+++    +    K   
Sbjct: 22  LTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGD 81

Query: 59  ---QTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115
              +    +    +  L+   ++ +   DI +   ++I     N   Y   + ++Y+IP 
Sbjct: 82  ILCRIKNTWNMSFRNELRDNGFVND-IDDIVRSTSLDIVVVPQNE-GYSISAISRYKIPL 139

Query: 116 ENLFLKGLIPSALT--NLSLRSTGIIERSSENLA-ISICMVLDVSRSMEDLYLQKHNDNN 172
           +       IP      ++ +  T  ++ +S+  A + + +VLDVSRSME           
Sbjct: 140 K---FCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME----------- 185

Query: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232
                          SF+  + TK             ID+ I+S   ++  + K I +  
Sbjct: 186 ---------------SFFDSSITK-------------IDMAIKSINAMLEEV-KLIPDVN 216

Query: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE-NTNTYPAMHHAYRELYN- 290
           N+ V+ G + ++  I   +   L   ++ ++ ++  L+ +  +TN+ P + +AY ++++ 
Sbjct: 217 NV-VQSGLVTFSNKI--EEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDM 273

Query: 291 EKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350
           +    H        KK ++F+TDGEN      Q    +L  C   +  G  +Y++ +   
Sbjct: 274 QGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ---QSLYYCNEAKKRGAIVYAIGIRV- 329

Query: 351 PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392
               + LR C  S   F+ V +   + ++F  I   I  + +
Sbjct: 330 IRSHEFLRACA-SPNSFYLVENPHSMYDAFSHIGKDIVTKRI 370


>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 458

 Score = 50.4 bits (119), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 192/448 (42%), Gaps = 70/448 (15%)

Query: 1   MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
           +TA+++ V        +D+    Y  + ++ A   A+++    ++  +++++ +++   +
Sbjct: 25  ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLI--QSLEEVSSRAKNS 82

Query: 61  STIFKKQIKKHLKQG--SYIRENAGDIAQKAQINITKDKNNP----LQYIAESKAQYEIP 114
            T  K++I+++L +   + +++N  D   +  +  T  + NP     Q +  S+    + 
Sbjct: 83  FTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDLLLN 142

Query: 115 TENLFLKGL-IPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNN 173
             +LFL+ + I S L      +  +     +   +SI  V+D SRSM D       D+  
Sbjct: 143 PLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY----QRDSEG 198

Query: 174 MTSNKYLLPPPPK-KSFWSKN----TTKSKYAPA-------------PAPAN-------- 207
              N +  P     KS+ S+N        K +P              P P +        
Sbjct: 199 QPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYMLYPGPLDPSLSEEHF 258

Query: 208 ----------RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSN 257
                     +K  ++ ++  +++ SI+K   +  N +VR+G   +N  ++ +     S 
Sbjct: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKI--DNVNDTVRMGATFFNDRVISD--PSFSW 314

Query: 258 NLNE-----VKSRLNKLNPYENTNTYPAMHHAYRELYNEKESS-HNTIGSTRLKKFVIFI 311
            +++     VK+     N   +T    AM  AY  + +  E   H    +   KK+++ +
Sbjct: 315 GVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLL 374

Query: 312 TDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQD----LLRKCTDSSGQF 367
           TDGEN+     Q+    + IC   ++ G++I ++A S     Q+     L  C  S   F
Sbjct: 375 TDGENT-----QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA-SPNSF 428

Query: 368 FAVNDSRELLESF-DKITDKIQEQSVRI 394
           F  N + EL + F D+I ++I E+ +RI
Sbjct: 429 FEANSTHELNKIFRDRIGNEIFERVIRI 456


>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 30.8 bits (68), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 300 GSTRLKKFVIFITDGENSGASAYQNTLN-TLQICEYMR------NAGMKIYSVAVSAPPE 352
           G++  K  ++F    + S +S  + T++  LQ C YM          + I+SV  S   +
Sbjct: 299 GASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQD 358

Query: 353 GQDLLRKCTDSSGQFFAVNDSRELL 377
            +  LR+C     +++ +N    ++
Sbjct: 359 TRYTLRQCASDPSKYYEINSDENVM 383


>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 411

 Score = 27.3 bits (59), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 329 LQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377
           LQ C YM       R+A + I+SV  S   + +  LR+C     +++ +N    ++
Sbjct: 329 LQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383


>gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 27.3 bits (59), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 328 TLQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377
            LQ C YM       R+A + I+SV  S   + +  LR+C     +++ +N    ++
Sbjct: 328 VLQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383


>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 27.3 bits (59), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 328 TLQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377
            LQ C YM       R+A + I+SV  S   + +  LR+C     +++ +N    ++
Sbjct: 328 VLQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383


>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 648

 Score = 26.2 bits (56), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 38  LSGCASIVSDRTIKDPTTK--KDQTSTIFKKQIKKHLKQGSYIRENAGDIAQKA 89
           L  C + + D+ ++   ++  +D+   +F+K I +H   G Y ++NA    QK 
Sbjct: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461


>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 412

 Score = 24.6 bits (52), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 333 EYMRNAGMKIYSVAVSAPPE------GQDLLRKCTDSSGQFFAVNDSRELLESFDKITDK 386
           EY+R  G KI+  ++            Q++  K +++   F  + D  E +ESFD++  +
Sbjct: 310 EYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESFDQMISE 369

Query: 387 IQEQSVRIAPN 397
              +  +I  N
Sbjct: 370 NNPEGNKIVRN 380


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,789
Number of Sequences: 1233
Number of extensions: 10050
Number of successful extensions: 41
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 20
length of query: 398
length of database: 328,796
effective HSP length: 76
effective length of query: 322
effective length of database: 235,088
effective search space: 75698336
effective search space used: 75698336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 39 (19.6 bits)