BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] (398 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/398 (100%), Positives = 398/398 (100%) Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60 Query: 61 STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL 120 STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL Sbjct: 61 STIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPTENLFL 120 Query: 121 KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL 180 KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL Sbjct: 121 KGLIPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYL 180 Query: 181 LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT 240 LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT Sbjct: 181 LPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGT 240 Query: 241 IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG 300 IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG Sbjct: 241 IAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG 300 Query: 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC 360 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC Sbjct: 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKC 360 Query: 361 TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398 TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR Sbjct: 361 TDSSGQFFAVNDSRELLESFDKITDKIQEQSVRIAPNR 398 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/401 (22%), Positives = 185/401 (46%), Gaps = 62/401 (15%) Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60 +TAI++ V F+ + I+ +H +++ ++ LD ++L I++ + +K+ Sbjct: 20 LTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGNNGKKQKNDF 79 Query: 61 S-----TIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115 S I++ + L++ + ++ +I + ++I D + Y + ++YE+P Sbjct: 80 SYRIIKNIWQTDFRNELRENGF-AQDINNIERSTSLSIIIDDQHK-DYNLSAVSRYEMP- 136 Query: 116 ENLFLKGLIPSAL--TNLSLRSTGIIERSSE-NLAISICMVLDVSRSMEDLYLQKHNDNN 172 F+ P ++ L T ++ SS+ ++ + + MVLDVS SM D + Sbjct: 137 ---FIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHF-------- 185 Query: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232 P K+ V S +++ I K+I + Sbjct: 186 -------------------------------GPGMDKLGVATRSIREMLDII-KSIPDVN 213 Query: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEK 292 N+ VR G + ++ IV Q PL+ + ++ ++N+L T + P + +AY ++++ K Sbjct: 214 NV-VRSGLVTFSSKIV--QTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAK 270 Query: 293 ES-SHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP 351 E H G KK++IF+TDGENS + + +L C + G +Y++ V A Sbjct: 271 EKLEHIAKGHDDYKKYIIFLTDGENSSPNI--DNKESLFYCNEAKRRGAIVYAIGVQAEA 328 Query: 352 EGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392 Q L+ C S +F++V +SR+L ++F +I ++ +Q + Sbjct: 329 ADQ-FLKNCA-SPDRFYSVQNSRKLHDAFLRIGKEMVKQRI 367 >gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 69.7 bits (169), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 11/118 (9%) Query: 275 TNTYPAMHHAYRELYNEKESSHNT--------IGSTRLKKFVIFITDGENSGASAYQNTL 326 T++ PAM AY+ L ++K+ S T I S +KF+IF+TDGEN+ +++ + Sbjct: 292 TDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN---FKSNV 348 Query: 327 NTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384 NT++IC+ + +KI +++++A P GQ LL+ C S + V ++ L+ F I+ Sbjct: 349 NTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNIS 406 Score = 31.2 bits (69), Expect = 0.032, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 15/102 (14%) Query: 12 FITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVS------DR--TIKDPTTKK--DQTS 61 F+ Y +D Y +N M+SA +AA+L+G + +VS DR +I + + D Sbjct: 39 FLIYVLDWH---YKKNSMESANNAAILAGASKMVSNLSRLGDRFESISNHAKRALIDDAK 95 Query: 62 TIFKKQIKKHLKQGSYIRENA--GDIAQKAQINITKDKNNPL 101 K IK+ L S + N +I ++I++T NN L Sbjct: 96 RFIKNHIKESLSGYSAVFYNTEIQNIVNSSRISMTHMANNRL 137 >gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] Length = 374 Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/402 (19%), Positives = 171/402 (42%), Gaps = 63/402 (15%) Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKD-- 58 +TAI + + FL + I+++HI +++ + S +D +++ I+++ + K Sbjct: 22 LTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKKLKGGD 81 Query: 59 ---QTSTIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115 + + + L+ ++ + DI + ++I N Y + ++Y+IP Sbjct: 82 ILCRIKNTWNMSFRNELRDNGFVND-IDDIVRSTSLDIVVVPQNE-GYSISAISRYKIPL 139 Query: 116 ENLFLKGLIPSALT--NLSLRSTGIIERSSENLA-ISICMVLDVSRSMEDLYLQKHNDNN 172 + IP ++ + T ++ +S+ A + + +VLDVSRSME Sbjct: 140 K---FCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME----------- 185 Query: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232 SF+ + TK ID+ I+S ++ + K I + Sbjct: 186 ---------------SFFDSSITK-------------IDMAIKSINAMLEEV-KLIPDVN 216 Query: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE-NTNTYPAMHHAYRELYN- 290 N+ V+ G + ++ I + L ++ ++ ++ L+ + +TN+ P + +AY ++++ Sbjct: 217 NV-VQSGLVTFSNKI--EEFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDM 273 Query: 291 EKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP 350 + H KK ++F+TDGEN Q +L C + G +Y++ + Sbjct: 274 QGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ---QSLYYCNEAKKRGAIVYAIGIRV- 329 Query: 351 PEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392 + LR C S F+ V + + ++F I I + + Sbjct: 330 IRSHEFLRACA-SPNSFYLVENPHSMYDAFSHIGKDIVTKRI 370 >gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 50.4 bits (119), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 94/448 (20%), Positives = 192/448 (42%), Gaps = 70/448 (15%) Query: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60 +TA+++ V +D+ Y + ++ A A+++ ++ +++++ +++ + Sbjct: 25 ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLI--QSLEEVSSRAKNS 82 Query: 61 STIFKKQIKKHLKQG--SYIRENAGDIAQKAQINITKDKNNP----LQYIAESKAQYEIP 114 T K++I+++L + + +++N D + + T + NP Q + S+ + Sbjct: 83 FTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDLLLN 142 Query: 115 TENLFLKGL-IPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNN 173 +LFL+ + I S L + + + +SI V+D SRSM D D+ Sbjct: 143 PLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY----QRDSEG 198 Query: 174 MTSNKYLLPPPPK-KSFWSKN----TTKSKYAPA-------------PAPAN-------- 207 N + P KS+ S+N K +P P P + Sbjct: 199 QPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYMLYPGPLDPSLSEEHF 258 Query: 208 ----------RKIDVLIESAGNLVNSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSN 257 +K ++ ++ +++ SI+K + N +VR+G +N ++ + S Sbjct: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKI--DNVNDTVRMGATFFNDRVISD--PSFSW 314 Query: 258 NLNE-----VKSRLNKLNPYENTNTYPAMHHAYRELYNEKESS-HNTIGSTRLKKFVIFI 311 +++ VK+ N +T AM AY + + E H + KK+++ + Sbjct: 315 GVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLL 374 Query: 312 TDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQD----LLRKCTDSSGQF 367 TDGEN+ Q+ + IC ++ G++I ++A S Q+ L C S F Sbjct: 375 TDGENT-----QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA-SPNSF 428 Query: 368 FAVNDSRELLESF-DKITDKIQEQSVRI 394 F N + EL + F D+I ++I E+ +RI Sbjct: 429 FEANSTHELNKIFRDRIGNEIFERVIRI 456 >gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 30.8 bits (68), Expect = 0.043, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 300 GSTRLKKFVIFITDGENSGASAYQNTLN-TLQICEYMR------NAGMKIYSVAVSAPPE 352 G++ K ++F + S +S + T++ LQ C YM + I+SV S + Sbjct: 299 GASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQD 358 Query: 353 GQDLLRKCTDSSGQFFAVNDSRELL 377 + LR+C +++ +N ++ Sbjct: 359 TRYTLRQCASDPSKYYEINSDENVM 383 >gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62] Length = 411 Score = 27.3 bits (59), Expect = 0.43, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Query: 329 LQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377 LQ C YM R+A + I+SV S + + LR+C +++ +N ++ Sbjct: 329 LQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383 >gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 27.3 bits (59), Expect = 0.43, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%) Query: 328 TLQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377 LQ C YM R+A + I+SV S + + LR+C +++ +N ++ Sbjct: 328 VLQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383 >gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 27.3 bits (59), Expect = 0.43, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%) Query: 328 TLQICEYM-------RNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELL 377 LQ C YM R+A + I+SV S + + LR+C +++ +N ++ Sbjct: 328 VLQDCHYMHKRHRTGRDA-ITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVM 383 >gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] Length = 648 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 38 LSGCASIVSDRTIKDPTTK--KDQTSTIFKKQIKKHLKQGSYIRENAGDIAQKA 89 L C + + D+ ++ ++ +D+ +F+K I +H G Y ++NA QK Sbjct: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 >gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Length = 412 Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 333 EYMRNAGMKIYSVAVSAPPE------GQDLLRKCTDSSGQFFAVNDSRELLESFDKITDK 386 EY+R G KI+ ++ Q++ K +++ F + D E +ESFD++ + Sbjct: 310 EYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESFDQMISE 369 Query: 387 IQEQSVRIAPN 397 + +I N Sbjct: 370 NNPEGNKIVRN 380 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.129 0.359 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,789 Number of Sequences: 1233 Number of extensions: 10050 Number of successful extensions: 41 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 20 length of query: 398 length of database: 328,796 effective HSP length: 76 effective length of query: 322 effective length of database: 235,088 effective search space: 75698336 effective search space used: 75698336 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 39 (19.6 bits)