Query gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 86 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 21:57:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781109.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1wku_A Alpha-actinin 3; calpo 48.6 7.5 0.00022 19.1 1.3 13 21-33 9-21 (31) 2 >2zzr_A Unsaturated glucuronyl 42.7 6.9 0.0002 19.3 0.3 15 38-52 23-37 (90) 3 >2zw3_A GAP junction beta-2 pr 23.8 53 0.0016 14.5 3.3 20 56-75 69-88 (226) 4 >1dsk_A VPR protein; viral pep 22.9 23 0.00069 16.4 0.3 14 18-35 10-23 (28) 5 >1rkt_A Protein YFIR; transcri 18.7 68 0.002 13.9 4.6 40 18-57 81-120 (123) 6 >3c7a_A Octopine dehydrogenase 16.6 66 0.0019 14.0 1.4 23 20-42 86-108 (142) 7 >2d0t_A Indoleamine 2,3-dioxyg 14.1 74 0.0022 13.7 1.2 18 50-67 34-51 (54) 8 >1g5a_A Amylosucrase; glycosyl 11.5 89 0.0026 13.2 0.9 14 55-68 15-28 (62) 9 >3c1d_A Protein ORAA, regulato 8.4 1.4E+02 0.0042 12.1 1.4 9 23-31 49-57 (61) 10 >2w0c_T Protein P6, protein VI 8.1 36 0.0011 15.4 -2.1 20 19-38 19-39 (44) No 1 >>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A (A:132-162) Probab=48.58 E-value=7.5 Score=19.09 Aligned_cols=13 Identities=38% Similarity=1.014 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHCC Q ss_conf 8988999998421 Q gi|254781109|r 21 SFIDSIILWCQHS 33 (86) Q Consensus 21 sfidsiilwcqhs 33 (86) |--|...||||.. T Consensus 9 sAKdaLLLWCQrK 21 (31) T 1wku_A 9 SAKEGLLLWCQRK 21 (31) T ss_dssp EHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 7899999999998 No 2 >>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} (A:149-238) Probab=42.73 E-value=6.9 Score=19.30 Aligned_cols=15 Identities=33% Similarity=0.815 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999989999999999 Q gi|254781109|r 38 FVIDSLMNLALIMLI 52 (86) Q Consensus 38 fvidslmnlalimli 52 (86) ..||++|||.|..-- T Consensus 23 vIID~mmNL~LL~wA 37 (90) T 2zzr_A 23 LIIDCLLNIQLLFFA 37 (90) T ss_dssp EETTHHHHTHHHHHH T ss_pred EEECHHHHHHHHHHH T ss_conf 566635319999999 No 3 >>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} (A:) Probab=23.79 E-value=53 Score=14.48 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=14.6 Q ss_pred CCCCHHHHHHHHHHHHHHHH Q ss_conf 64113458999999999999 Q gi|254781109|r 56 RPVSHRRFFALLFIYLIIIF 75 (86) Q Consensus 56 rpvshrrffallfiyliiif 75 (86) .|+||-||+++-+|.+-.-. T Consensus 69 fPiShiRfW~~Qii~vs~Ps 88 (226) T 2zw3_A 69 FPISHIRLWALQLIFVSTPA 88 (226) T ss_dssp CSSCHHHHHHHHHHHTHHHH T ss_pred CCCHHHHHHHHHHHHHHCHH T ss_conf 87618999999999995429 No 4 >>1dsk_A VPR protein; viral peptide, polypeptide; NMR {Human immunodeficiency virus type 1} (A:) Probab=22.90 E-value=23 Score=16.42 Aligned_cols=14 Identities=50% Similarity=0.968 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHCCCH Q ss_conf 048898899999842111 Q gi|254781109|r 18 IFISFIDSIILWCQHSRH 35 (86) Q Consensus 18 ifisfidsiilwcqhsrh 35 (86) .||.|- .-|||||- T Consensus 10 lfiHFR----iGC~HSrI 23 (28) T 1dsk_A 10 LFIHFR----IGCRHSRI 23 (28) T ss_dssp HHHHHH----HHHTTTTG T ss_pred HHHHEE----CCCCCCCC T ss_conf 898602----15630420 No 5 >>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:83-205) Probab=18.68 E-value=68 Score=13.88 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 0488988999998421118999998999999999997064 Q gi|254781109|r 18 IFISFIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLCRP 57 (86) Q Consensus 18 ifisfidsiilwcqhsrhvdfvidslmnlalimlivlcrp 57 (86) .||||+|.++|-.++-------.+..++...-+|.-.-+| T Consensus 81 ~~Is~~DGLmL~~~~l~~e~~~v~~Q~E~~~~~L~~~L~p 120 (123) T 1rkt_A 81 FFLNXNDGIIQNALYFDEEKADVSGLAESAKLYLKTVLQA 120 (123) T ss_dssp HHHHHHHHHHHHHHHSCHHHHCHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999865887568899999999999976083 No 6 >>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* (A:205-269,A:328-404) Probab=16.55 E-value=66 Score=13.96 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 88988999998421118999998 Q gi|254781109|r 20 ISFIDSIILWCQHSRHVDFVIDS 42 (86) Q Consensus 20 isfidsiilwcqhsrhvdfvids 42 (86) ...+|.+|+|+|.-....|+.|+ T Consensus 86 TP~iD~vi~W~Q~~~gKEyLv~g 108 (142) T 3c7a_A 86 IPSNDKLIMWAQEKIGKEYLVDG 108 (142) T ss_dssp CHHHHHHHHHHHHHHTCCCCBTT T ss_pred CCHHHHHHHHHHHHHCCHHHHCC T ss_conf 76489999999998486202057 No 7 >>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} (A:263-316) Probab=14.08 E-value=74 Score=13.68 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=12.9 Q ss_pred HHHHHHCCCCHHHHHHHH Q ss_conf 999970641134589999 Q gi|254781109|r 50 MLIVLCRPVSHRRFFALL 67 (86) Q Consensus 50 mlivlcrpvshrrffall 67 (86) .-.--.+|..||+|..-+ T Consensus 34 ~emR~YMP~~HR~FL~~v 51 (54) T 2d0t_A 34 QDMRRYMPPAHRNFLCSL 51 (54) T ss_dssp HHHGGGSCHHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHH T ss_conf 999985749999999999 No 8 >>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} (A:395-456) Probab=11.50 E-value=89 Score=13.24 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=9.8 Q ss_pred HCCCCHHHHHHHHH Q ss_conf 06411345899999 Q gi|254781109|r 55 CRPVSHRRFFALLF 68 (86) Q Consensus 55 crpvshrrffallf 68 (86) -.|++||||..-.| T Consensus 15 ~~~~~Hr~FL~dfy 28 (62) T 1g5a_A 15 ISGYDHRQFLNRFF 28 (62) T ss_dssp CCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 55667887763013 No 9 >>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:1-61) Probab=8.37 E-value=1.4e+02 Score=12.11 Aligned_cols=9 Identities=33% Similarity=1.280 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 889999984 Q gi|254781109|r 23 IDSIILWCQ 31 (86) Q Consensus 23 idsiilwcq 31 (86) ||..|-||+ T Consensus 49 Ie~vIa~C~ 57 (61) T 3c1d_A 49 YERVIAWCH 57 (61) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 10 >>2w0c_T Protein P6, protein VI; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2} (T:53-96) Probab=8.10 E-value=36 Score=15.35 Aligned_cols=20 Identities=50% Similarity=0.966 Sum_probs=0.0 Q ss_pred HHHHHHHHHHH-HHCCCHHHH Q ss_conf 48898899999-842111899 Q gi|254781109|r 19 FISFIDSIILW-CQHSRHVDF 38 (86) Q Consensus 19 fisfidsiilw-cqhsrhvdf 38 (86) ||.+-|.|--| -.|.||-|| T Consensus 19 fiayddrikawlgthdrhkdf 39 (44) T 2w0c_T 19 FIAYDDRIKAWLGTHDRHKDF 39 (44) T ss_dssp HHHHHHSCSCCCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHH T ss_conf 455358899886465047879 Done!