Query         gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 86
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 00:50:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781109.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2gum_A Glycoprotein B; envelop  11.4      76  0.0032   12.8   2.4   36   27-62    424-461 (628)
  2 2wjn_H Reaction center protein  11.3      66  0.0028   13.1   1.0   11   62-72     23-33  (258)
  3 2zw3_A GAP junction beta-2 pro   9.0      95   0.004   12.3   3.3   17   56-72     69-85  (226)
  4 1hpl_A Lipase; hydrolase(carbo   8.5      95   0.004   12.3   0.9   16   30-45    262-277 (449)
  5 1x5d_A Protein disulfide-isome   7.6      99  0.0042   12.1   0.7   19   27-45     34-52  (133)
  6 2r2j_A Thioredoxin domain-cont   7.4   1E+02  0.0043   12.1   0.7   13   29-41     33-45  (382)
  7 3h79_A Thioredoxin-like protei   7.4 1.1E+02  0.0047   11.8   1.1   17   28-44     43-59  (127)
  8 3d6i_A Monothiol glutaredoxin-   7.3 1.1E+02  0.0048   11.8   0.9   17   29-45     32-48  (112)
  9 1nho_A Probable thioredoxin; b   7.0 1.2E+02   0.005   11.7   0.9   17   29-45     12-28  (85)
 10 1t00_A Thioredoxin, TRX; struc   6.9 1.1E+02  0.0047   11.8   0.7   17   29-45     34-50  (112)

No 1  
>2gum_A Glycoprotein B; envelope glycoprotein, membrane fusion, viral protein; 2.10A {Human herpesvirus 1 strain kos} SCOP: e.76.1.1
Probab=11.45  E-value=76  Score=12.76  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             HHHHHCCCHHHHHHH--HHHHHHHHHHHHHHCCCCHHH
Q ss_conf             999842111899999--899999999999706411345
Q gi|254781109|r   27 ILWCQHSRHVDFVID--SLMNLALIMLIVLCRPVSHRR   62 (86)
Q Consensus        27 ilwcqhsrhvdfvid--slmnlalimlivlcrpvshrr   62 (86)
                      .-||+..+.---+-.  |-.|-.-+|--+.-||||.|.
T Consensus       424 ~AWC~~Q~R~~~vw~ELsKINPssv~saiyg~pVsAr~  461 (628)
T 2gum_A          424 IAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARM  461 (628)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEHEE
T ss_conf             99998666799999987368888988987097421101


No 2  
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H*
Probab=11.27  E-value=66  Score=13.10  Aligned_cols=11  Identities=18%  Similarity=0.637  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHH
Q ss_conf             58999999999
Q gi|254781109|r   62 RFFALLFIYLI   72 (86)
Q Consensus        62 rffallfiyli   72 (86)
                      -|||+|.+||-
T Consensus        23 ~FFa~Li~YL~   33 (258)
T 2wjn_H           23 VIWTVVLLYLR   33 (258)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999862


No 3  
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens}
Probab=9.00  E-value=95  Score=12.26  Aligned_cols=17  Identities=41%  Similarity=0.774  Sum_probs=11.8

Q ss_pred             CCCCHHHHHHHHHHHHH
Q ss_conf             64113458999999999
Q gi|254781109|r   56 RPVSHRRFFALLFIYLI   72 (86)
Q Consensus        56 rpvshrrffallfiyli   72 (86)
                      .|+||-||.++-.|..-
T Consensus        69 ~PiShiRfW~~Qii~Vs   85 (226)
T 2zw3_A           69 FPISHIRLWALQLIFVS   85 (226)
T ss_dssp             CSSCHHHHHHHHHHHTH
T ss_pred             CCCCHHHHHHHHHHHHH
T ss_conf             88833778889999983


No 4  
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19
Probab=8.45  E-value=95  Score=12.26  Aligned_cols=16  Identities=38%  Similarity=0.827  Sum_probs=13.3

Q ss_pred             HHCCCHHHHHHHHHHH
Q ss_conf             8421118999998999
Q gi|254781109|r   30 CQHSRHVDFVIDSLMN   45 (86)
Q Consensus        30 cqhsrhvdfvidslmn   45 (86)
                      |.|.|-+.|-++|+.+
T Consensus       262 CsH~rs~~~f~eSi~~  277 (449)
T 1hpl_A          262 CNHLRSYKYYTDSILN  277 (449)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHCC
T ss_conf             6838899999997157


No 5  
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=7.61  E-value=99  Score=12.15  Aligned_cols=19  Identities=16%  Similarity=0.499  Sum_probs=13.9

Q ss_pred             HHHHHCCCHHHHHHHHHHH
Q ss_conf             9998421118999998999
Q gi|254781109|r   27 ILWCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        27 ilwcqhsrhvdfvidslmn   45 (86)
                      --||+|++...-.+..+..
T Consensus        34 a~wC~~C~~~~p~~~~~a~   52 (133)
T 1x5d_A           34 APWCGHCKNLEPEWAAAAS   52 (133)
T ss_dssp             CTTCHHHHTHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHH
T ss_conf             8998621145715777777


No 6  
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, stress response; 2.60A {Homo sapiens}
Probab=7.37  E-value=1e+02  Score=12.07  Aligned_cols=13  Identities=23%  Similarity=0.889  Sum_probs=6.9

Q ss_pred             HHHCCCHHHHHHH
Q ss_conf             9842111899999
Q gi|254781109|r   29 WCQHSRHVDFVID   41 (86)
Q Consensus        29 wcqhsrhvdfvid   41 (86)
                      ||.|++...-...
T Consensus        33 wC~hCk~l~p~~~   45 (382)
T 2r2j_A           33 WCRFSQMLHPIFE   45 (382)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
T ss_conf             9989998899999


No 7  
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown function; 1.50A {Trypanosoma cruzi}
Probab=7.37  E-value=1.1e+02  Score=11.85  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=12.2

Q ss_pred             HHHHCCCHHHHHHHHHH
Q ss_conf             99842111899999899
Q gi|254781109|r   28 LWCQHSRHVDFVIDSLM   44 (86)
Q Consensus        28 lwcqhsrhvdfvidslm   44 (86)
                      -||+|++...-+.+.+.
T Consensus        43 ~wC~~Ck~~~p~~~~la   59 (127)
T 3h79_A           43 PWSRHSVAAMRLWDDLS   59 (127)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             98978998999999999


No 8  
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=7.30  E-value=1.1e+02  Score=11.83  Aligned_cols=17  Identities=18%  Similarity=0.597  Sum_probs=0.0

Q ss_pred             HHHCCCHHHHHHHHHHH
Q ss_conf             98421118999998999
Q gi|254781109|r   29 WCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        29 wcqhsrhvdfvidslmn   45 (86)
                      ||.+.+...-+.+.+..
T Consensus        32 WC~~Ck~~~p~~~~la~   48 (112)
T 3d6i_A           32 WAEPCKALKQVFEAISN   48 (112)
T ss_dssp             C--CHHHHHHHHHHHHH
T ss_pred             CCHHHHCCCCHHHHHHH
T ss_conf             79667657813567644


No 9  
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=6.96  E-value=1.2e+02  Score=11.73  Aligned_cols=17  Identities=18%  Similarity=0.110  Sum_probs=0.0

Q ss_pred             HHHCCCHHHHHHHHHHH
Q ss_conf             98421118999998999
Q gi|254781109|r   29 WCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        29 wcqhsrhvdfvidslmn   45 (86)
                      ||.|.+...-.++.+..
T Consensus        12 wC~~C~~~~p~~~~l~~   28 (85)
T 1nho_A           12 TCPYCPMAIEVVDEAKK   28 (85)
T ss_dssp             SSCCSTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCC
T ss_conf             98315879999965333


No 10 
>1t00_A Thioredoxin, TRX; structure, redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor A3}
Probab=6.86  E-value=1.1e+02  Score=11.85  Aligned_cols=17  Identities=18%  Similarity=0.706  Sum_probs=0.0

Q ss_pred             HHHCCCHHHHHHHHHHH
Q ss_conf             98421118999998999
Q gi|254781109|r   29 WCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        29 wcqhsrhvdfvidslmn   45 (86)
                      ||.+++...-....+.+
T Consensus        34 wC~~C~~~~p~~~~l~~   50 (112)
T 1t00_A           34 WCGPCRQIAPSLEAIAA   50 (112)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHCHHHHHHHH
T ss_conf             89888976736899999


Done!