Query gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 86 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 00:50:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781109.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2gum_A Glycoprotein B; envelop 11.4 76 0.0032 12.8 2.4 36 27-62 424-461 (628) 2 2wjn_H Reaction center protein 11.3 66 0.0028 13.1 1.0 11 62-72 23-33 (258) 3 2zw3_A GAP junction beta-2 pro 9.0 95 0.004 12.3 3.3 17 56-72 69-85 (226) 4 1hpl_A Lipase; hydrolase(carbo 8.5 95 0.004 12.3 0.9 16 30-45 262-277 (449) 5 1x5d_A Protein disulfide-isome 7.6 99 0.0042 12.1 0.7 19 27-45 34-52 (133) 6 2r2j_A Thioredoxin domain-cont 7.4 1E+02 0.0043 12.1 0.7 13 29-41 33-45 (382) 7 3h79_A Thioredoxin-like protei 7.4 1.1E+02 0.0047 11.8 1.1 17 28-44 43-59 (127) 8 3d6i_A Monothiol glutaredoxin- 7.3 1.1E+02 0.0048 11.8 0.9 17 29-45 32-48 (112) 9 1nho_A Probable thioredoxin; b 7.0 1.2E+02 0.005 11.7 0.9 17 29-45 12-28 (85) 10 1t00_A Thioredoxin, TRX; struc 6.9 1.1E+02 0.0047 11.8 0.7 17 29-45 34-50 (112) No 1 >2gum_A Glycoprotein B; envelope glycoprotein, membrane fusion, viral protein; 2.10A {Human herpesvirus 1 strain kos} SCOP: e.76.1.1 Probab=11.45 E-value=76 Score=12.76 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=26.7 Q ss_pred HHHHHCCCHHHHHHH--HHHHHHHHHHHHHHCCCCHHH Q ss_conf 999842111899999--899999999999706411345 Q gi|254781109|r 27 ILWCQHSRHVDFVID--SLMNLALIMLIVLCRPVSHRR 62 (86) Q Consensus 27 ilwcqhsrhvdfvid--slmnlalimlivlcrpvshrr 62 (86) .-||+..+.---+-. |-.|-.-+|--+.-||||.|. T Consensus 424 ~AWC~~Q~R~~~vw~ELsKINPssv~saiyg~pVsAr~ 461 (628) T 2gum_A 424 IAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARM 461 (628) T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEHEE T ss_conf 99998666799999987368888988987097421101 No 2 >2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H* Probab=11.27 E-value=66 Score=13.10 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=8.1 Q ss_pred HHHHHHHHHHH Q ss_conf 58999999999 Q gi|254781109|r 62 RFFALLFIYLI 72 (86) Q Consensus 62 rffallfiyli 72 (86) -|||+|.+||- T Consensus 23 ~FFa~Li~YL~ 33 (258) T 2wjn_H 23 VIWTVVLLYLR 33 (258) T ss_dssp HHHHHHHHTHH T ss_pred HHHHHHHHHHH T ss_conf 99999999862 No 3 >2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} Probab=9.00 E-value=95 Score=12.26 Aligned_cols=17 Identities=41% Similarity=0.774 Sum_probs=11.8 Q ss_pred CCCCHHHHHHHHHHHHH Q ss_conf 64113458999999999 Q gi|254781109|r 56 RPVSHRRFFALLFIYLI 72 (86) Q Consensus 56 rpvshrrffallfiyli 72 (86) .|+||-||.++-.|..- T Consensus 69 ~PiShiRfW~~Qii~Vs 85 (226) T 2zw3_A 69 FPISHIRLWALQLIFVS 85 (226) T ss_dssp CSSCHHHHHHHHHHHTH T ss_pred CCCCHHHHHHHHHHHHH T ss_conf 88833778889999983 No 4 >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 Probab=8.45 E-value=95 Score=12.26 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=13.3 Q ss_pred HHCCCHHHHHHHHHHH Q ss_conf 8421118999998999 Q gi|254781109|r 30 CQHSRHVDFVIDSLMN 45 (86) Q Consensus 30 cqhsrhvdfvidslmn 45 (86) |.|.|-+.|-++|+.+ T Consensus 262 CsH~rs~~~f~eSi~~ 277 (449) T 1hpl_A 262 CNHLRSYKYYTDSILN 277 (449) T ss_dssp HHHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHCC T ss_conf 6838899999997157 No 5 >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=7.61 E-value=99 Score=12.15 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=13.9 Q ss_pred HHHHHCCCHHHHHHHHHHH Q ss_conf 9998421118999998999 Q gi|254781109|r 27 ILWCQHSRHVDFVIDSLMN 45 (86) Q Consensus 27 ilwcqhsrhvdfvidslmn 45 (86) --||+|++...-.+..+.. T Consensus 34 a~wC~~C~~~~p~~~~~a~ 52 (133) T 1x5d_A 34 APWCGHCKNLEPEWAAAAS 52 (133) T ss_dssp CTTCHHHHTHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHH T ss_conf 8998621145715777777 No 6 >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, stress response; 2.60A {Homo sapiens} Probab=7.37 E-value=1e+02 Score=12.07 Aligned_cols=13 Identities=23% Similarity=0.889 Sum_probs=6.9 Q ss_pred HHHCCCHHHHHHH Q ss_conf 9842111899999 Q gi|254781109|r 29 WCQHSRHVDFVID 41 (86) Q Consensus 29 wcqhsrhvdfvid 41 (86) ||.|++...-... T Consensus 33 wC~hCk~l~p~~~ 45 (382) T 2r2j_A 33 WCRFSQMLHPIFE 45 (382) T ss_dssp TCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 9989998899999 No 7 >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown function; 1.50A {Trypanosoma cruzi} Probab=7.37 E-value=1.1e+02 Score=11.85 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=12.2 Q ss_pred HHHHCCCHHHHHHHHHH Q ss_conf 99842111899999899 Q gi|254781109|r 28 LWCQHSRHVDFVIDSLM 44 (86) Q Consensus 28 lwcqhsrhvdfvidslm 44 (86) -||+|++...-+.+.+. T Consensus 43 ~wC~~Ck~~~p~~~~la 59 (127) T 3h79_A 43 PWSRHSVAAMRLWDDLS 59 (127) T ss_dssp TTCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 98978998999999999 No 8 >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Probab=7.30 E-value=1.1e+02 Score=11.83 Aligned_cols=17 Identities=18% Similarity=0.597 Sum_probs=0.0 Q ss_pred HHHCCCHHHHHHHHHHH Q ss_conf 98421118999998999 Q gi|254781109|r 29 WCQHSRHVDFVIDSLMN 45 (86) Q Consensus 29 wcqhsrhvdfvidslmn 45 (86) ||.+.+...-+.+.+.. T Consensus 32 WC~~Ck~~~p~~~~la~ 48 (112) T 3d6i_A 32 WAEPCKALKQVFEAISN 48 (112) T ss_dssp C--CHHHHHHHHHHHHH T ss_pred CCHHHHCCCCHHHHHHH T ss_conf 79667657813567644 No 9 >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 Probab=6.96 E-value=1.2e+02 Score=11.73 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=0.0 Q ss_pred HHHCCCHHHHHHHHHHH Q ss_conf 98421118999998999 Q gi|254781109|r 29 WCQHSRHVDFVIDSLMN 45 (86) Q Consensus 29 wcqhsrhvdfvidslmn 45 (86) ||.|.+...-.++.+.. T Consensus 12 wC~~C~~~~p~~~~l~~ 28 (85) T 1nho_A 12 TCPYCPMAIEVVDEAKK 28 (85) T ss_dssp SSCCSTTHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCC T ss_conf 98315879999965333 No 10 >1t00_A Thioredoxin, TRX; structure, redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor A3} Probab=6.86 E-value=1.1e+02 Score=11.85 Aligned_cols=17 Identities=18% Similarity=0.706 Sum_probs=0.0 Q ss_pred HHHCCCHHHHHHHHHHH Q ss_conf 98421118999998999 Q gi|254781109|r 29 WCQHSRHVDFVIDSLMN 45 (86) Q Consensus 29 wcqhsrhvdfvidslmn 45 (86) ||.+++...-....+.+ T Consensus 34 wC~~C~~~~p~~~~l~~ 50 (112) T 1t00_A 34 WCGPCRQIAPSLEAIAA 50 (112) T ss_dssp TCHHHHHHHHHHHHHHH T ss_pred CCHHHHHHCHHHHHHHH T ss_conf 89888976736899999 Done!