Query         gi|254781109|ref|YP_003065522.1| hypothetical protein CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 86
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:21:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781109.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1rzhh2 f.23.10.1 (H:11-35) Ph  16.0      29  0.0021   13.7   1.5   12   61-72     11-22  (26)
  2 d2guma1 e.76.1.1 (A:111-725) G  12.4      41   0.003   12.9   2.4   36   27-62    416-453 (615)
  3 d1bg6a1 a.100.1.5 (A:188-359)    8.4      31  0.0023   13.6  -0.3   23   19-41    128-150 (172)
  4 d2djja1 c.47.1.2 (A:6-121) Pro   6.7      65  0.0047   11.9   0.7   18   28-45     30-47  (116)
  5 d1rp1a2 c.69.1.19 (A:1-336) Pa   6.6      71  0.0051   11.6   0.8   16   30-45    262-277 (337)
  6 d2b5ea1 c.47.1.2 (A:365-504) P   6.5      70  0.0051   11.7   0.7   18   28-45     40-57  (140)
  7 d1fb6a_ c.47.1.1 (A:) Thioredo   6.4      71  0.0051   11.6   0.7   18   28-45     27-44  (104)
  8 d1eysh2 f.23.10.1 (H:7-43) Pho   6.0      77  0.0056   11.4   1.5   11   62-72     15-25  (37)
  9 d1bu8a2 c.69.1.19 (A:1-336) Pa   6.0      78  0.0056   11.4   0.8   16   30-45    263-278 (338)
 10 d2es7a1 c.47.1.20 (A:7-125) Hy   5.9      78  0.0057   11.4   1.1   18   28-45     40-57  (119)

No 1  
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.03  E-value=29  Score=13.75  Aligned_cols=12  Identities=42%  Similarity=0.479  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             458999999999
Q gi|254781109|r   61 RRFFALLFIYLI   72 (86)
Q Consensus        61 rrffallfiyli   72 (86)
                      --|||+|..|+-
T Consensus        11 w~ffalli~ylq   22 (26)
T d1rzhh2          11 WIFLAGLIYYLQ   22 (26)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999985


No 2  
>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]}
Probab=12.44  E-value=41  Score=12.94  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=26.2

Q ss_pred             HHHHHCCCHHHHHHH--HHHHHHHHHHHHHHCCCCHHH
Q ss_conf             999842111899999--899999999999706411345
Q gi|254781109|r   27 ILWCQHSRHVDFVID--SLMNLALIMLIVLCRPVSHRR   62 (86)
Q Consensus        27 ilwcqhsrhvdfvid--slmnlalimlivlcrpvshrr   62 (86)
                      .-||+..+.---+-.  |-.|-.-+|--++-||||-|.
T Consensus       416 ~AWC~~Q~R~~~mW~ElsKINPs~v~SaiygrpVsAr~  453 (615)
T d2guma1         416 IAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARM  453 (615)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
T ss_conf             99998766789999986368878889998399634324


No 3  
>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Probab=8.39  E-value=31  Score=13.57  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             48898899999842111899999
Q gi|254781109|r   19 FISFIDSIILWCQHSRHVDFVID   41 (86)
Q Consensus        19 fisfidsiilwcqhsrhvdfvid   41 (86)
                      -...+|++|.|||-..-.||--+
T Consensus       128 ~tP~i~~ii~~a~~~~g~d~~~~  150 (172)
T d1bg6a1         128 PTPLIDAVLDLISSLIDTDFRKE  150 (172)
T ss_dssp             CCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHC
T ss_conf             96048999999999977577751


No 4  
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}
Probab=6.74  E-value=65  Score=11.85  Aligned_cols=18  Identities=22%  Similarity=0.534  Sum_probs=13.4

Q ss_pred             HHHHCCCHHHHHHHHHHH
Q ss_conf             998421118999998999
Q gi|254781109|r   28 LWCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        28 lwcqhsrhvdfvidslmn   45 (86)
                      -||+|++...-..+.+.+
T Consensus        30 ~wC~~Ck~~~p~~~~la~   47 (116)
T d2djja1          30 PWCGHCKALAPKYEELGA   47 (116)
T ss_dssp             SSCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHH
T ss_conf             646656534069999999


No 5  
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}
Probab=6.65  E-value=71  Score=11.64  Aligned_cols=16  Identities=31%  Similarity=0.760  Sum_probs=13.9

Q ss_pred             HHCCCHHHHHHHHHHH
Q ss_conf             8421118999998999
Q gi|254781109|r   30 CQHSRHVDFVIDSLMN   45 (86)
Q Consensus        30 cqhsrhvdfvidslmn   45 (86)
                      |.|.|-+.|-++|+.+
T Consensus       262 CsH~ra~~yf~eSi~~  277 (337)
T d1rp1a2         262 CNHLRSYKYYSESILN  277 (337)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHCC
T ss_conf             4305588999998278


No 6  
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.49  E-value=70  Score=11.67  Aligned_cols=18  Identities=22%  Similarity=0.656  Sum_probs=13.0

Q ss_pred             HHHHCCCHHHHHHHHHHH
Q ss_conf             998421118999998999
Q gi|254781109|r   28 LWCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        28 lwcqhsrhvdfvidslmn   45 (86)
                      -||.|++...-+.+.+-.
T Consensus        40 ~wC~~C~~~~p~~~~la~   57 (140)
T d2b5ea1          40 PWCGHCKRLAPTYQELAD   57 (140)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHH
T ss_conf             447543025799999999


No 7  
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}
Probab=6.42  E-value=71  Score=11.64  Aligned_cols=18  Identities=33%  Similarity=0.696  Sum_probs=13.1

Q ss_pred             HHHHCCCHHHHHHHHHHH
Q ss_conf             998421118999998999
Q gi|254781109|r   28 LWCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        28 lwcqhsrhvdfvidslmn   45 (86)
                      -||.+++...-+...+.+
T Consensus        27 ~wC~~C~~~~~~~~~l~~   44 (104)
T d1fb6a_          27 PWCGPCKLIAPVIDELAK   44 (104)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHH
T ss_conf             864776535833688877


No 8  
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=6.04  E-value=77  Score=11.45  Aligned_cols=11  Identities=55%  Similarity=0.712  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHH
Q ss_conf             58999999999
Q gi|254781109|r   62 RFFALLFIYLI   72 (86)
Q Consensus        62 rffallfiyli   72 (86)
                      -|||.|-+||-
T Consensus        15 ~FFagLi~YL~   25 (37)
T d1eysh2          15 LFFFGLIIYLR   25 (37)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999997


No 9  
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.96  E-value=78  Score=11.42  Aligned_cols=16  Identities=31%  Similarity=0.735  Sum_probs=13.6

Q ss_pred             HHCCCHHHHHHHHHHH
Q ss_conf             8421118999998999
Q gi|254781109|r   30 CQHSRHVDFVIDSLMN   45 (86)
Q Consensus        30 cqhsrhvdfvidslmn   45 (86)
                      |-|.|-++|-++|+.|
T Consensus       263 CsH~ra~~yf~ESI~~  278 (338)
T d1bu8a2         263 CNHLRSYKYYASSILN  278 (338)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHCC
T ss_conf             6258899999998458


No 10 
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}
Probab=5.89  E-value=78  Score=11.40  Aligned_cols=18  Identities=11%  Similarity=0.093  Sum_probs=14.6

Q ss_pred             HHHHCCCHHHHHHHHHHH
Q ss_conf             998421118999998999
Q gi|254781109|r   28 LWCQHSRHVDFVIDSLMN   45 (86)
Q Consensus        28 lwcqhsrhvdfvidslmn   45 (86)
                      -||.+++.+.-+++.|.+
T Consensus        40 ~wCp~C~~~~pvl~eL~~   57 (119)
T d2es7a1          40 RRTPEVSDNPVMIAELLR   57 (119)
T ss_dssp             CC----CCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             989027789889999998


Done!