RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781109|ref|YP_003065522.1| hypothetical protein
CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>gnl|CDD|117033 pfam08456, Vmethyltransf_C, Viral methyltransferase C-terminal.
          This domain is found to the C-terminus of the viral
          methyltransferase domain (pfam01660).
          Length = 360

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 14 RNIVIFISFIDSIILWCQHSRHVDFVID 41
          R++ +++   D I LW QH+ +  F +D
Sbjct: 57 RDVPLYVEITDRIKLWKQHAPNNGFSLD 84


>gnl|CDD|132676 TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, YPEST
           subtype.  The CRISPR-associated protein Cas1 is
           virtually universal to CRISPR systems. CRISPR, an
           acronym for Clustered Regularly Interspaced Short
           Palindromic Repeats, is prokaryotic immunity system for
           foreign DNA, mostly from phage. CRISPR systems belong to
           different subtypes, distinguished by both nature of the
           repeats, the makeup of the cohort of associated Cas
           proteins, and by molecular phylogeny within the more
           universal Cas proteins such as this one. This model is
           of type EXCEPTION and provides more specific information
           than the EQUIVALOG model TIGR00287. It describes the
           Cas1 protein particular to the YPEST subtype of
           CRISPR/Cas system.
          Length = 307

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 21  SFIDSIILWCQHSRHVDFVIDSLMNLAL 48
            F    I   Q S  +D++I+S+  +AL
Sbjct: 280 EFRQQCIAILQDSDALDYMIESIKEIAL 307


>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase.  Members of this
           protein family are lipoprotein lipase (EC 3.1.1.34), a
           eukaryotic triacylglycerol lipase active in plasma and
           similar to pancreatic and hepatic triacylglycerol
           lipases (EC 3.1.1.3). It is also called clearing factor.
           It cleaves chylomicron and VLDL triacylglycerols; it
           also has phospholipase A-1 activity.
          Length = 442

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 30  CQHSRHVDFVIDSLMN 45
           C H R +   IDSL+N
Sbjct: 234 CSHERSIHLFIDSLLN 249


>gnl|CDD|184473 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional.
          Length = 467

 Score = 24.4 bits (53), Expect = 6.4
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 3  LKNS-TKLLLRGRNIVIFISFIDSII 27
          LKN+  ++LLRG+N+V +  + D ++
Sbjct: 72 LKNTKIQMLLRGQNLVGYRHYADDVV 97


>gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional.
          Length = 618

 Score = 24.2 bits (53), Expect = 7.2
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 22 FIDSIILWCQHSRHVDFVIDSLMNLALIMLIVLC 55
           I     W    R ++FV + ++NL  I LI++ 
Sbjct: 7  IIAGFFKWTW--RLLNFVRELVLNLFFIFLILVG 38


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.347    0.155    0.474 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,389,164
Number of extensions: 78887
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 70
Length of query: 86
Length of database: 5,994,473
Length adjustment: 55
Effective length of query: 31
Effective length of database: 4,806,033
Effective search space: 148987023
Effective search space used: 148987023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 50 (23.1 bits)