RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781109|ref|YP_003065522.1| hypothetical protein
CLIBASIA_05055 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.0 bits (62), Expect = 0.59
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 20/83 (24%)

Query: 2   ILKNSTKLLLR-GRNIVIFISF----IDSIILWCQHSRH---VDFVIDSLMNLALIMLI- 52
           ++K S + L    R  +         ++ I+ W ++  +    D+++   ++  LI +I 
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245

Query: 53  -----VLCR-----PVSHRRFFA 65
                V  +     P   R +  
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLK 268


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.347    0.155    0.474 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 709,497
Number of extensions: 25649
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 14
Length of query: 86
Length of database: 5,693,230
Length adjustment: 54
Effective length of query: 32
Effective length of database: 4,384,054
Effective search space: 140289728
Effective search space used: 140289728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 50 (23.4 bits)