HHsearch alignment for GI: 254781110 and conserved domain: TIGR00868
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=99.47 E-value=4e-13 Score=103.96 Aligned_cols=180 Identities=24% Similarity=0.361 Sum_probs=122.4
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 20122102232422335787666675346766530678899989999851046787655430223204876431244577
Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW 271 (420)
Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 271 (420)
T Consensus 309 iVCLVLDKSGSM~-------------------~~dRL~RmNQAa~lFL~Q~-----vE~gs~VGmV~FDS~A~i~n~L~~ 364 (874)
T TIGR00868 309 IVCLVLDKSGSMT-------------------KEDRLKRMNQAAKLFLLQI-----VEKGSWVGMVTFDSAAEIKNELIK 364 (874)
T ss_pred EEEEEECCCCCCC-------------------CCCHHHHHHHHHHHHEEEE-----EECCCEEEEEECCCEEEEEEEEEE
T ss_conf 8999863443379-------------------8853345555664301235-----541526776630644576542077
Q ss_pred CH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 84-88999999864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r 272 GT-EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420)
Q Consensus 272 ~~-~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420)
T Consensus 365 I~s~~~~~~l~a~LP~~a~GGTSIC~Gl~~aFq~I~~~~~~t~GSE----------------i~LLTDGEDN~i~----- 423 (874)
T TIGR00868 365 ITSSDERDALTANLPTEASGGTSICSGLKAAFQVIKKSDQSTDGSE----------------IVLLTDGEDNTIS----- 423 (874)
T ss_pred ECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE----------------EEEEECCCCCCEE-----
T ss_conf 5266899899870778787680365667666543331266667536----------------9983068757623-----
Q ss_pred HHHH-HHHHHCCCEEEEEEECCCCCHH-HHHHHHHCCCCCEEEE--CCHHHHHHHHHHHHH---HHHCCEEEEEEC
Q ss_conf 9999-9999789879999954897789-9999862189827981--798999999999998---742025587736
Q gi|254781110|r 351 IKIC-DKAKENFIKIVTISINASPNGQ-RLLKTCVSSPEYHYNV--VNADSLIHVFQNISQ---LMVHRKYSVILK 419 (420)
Q Consensus 351 ~~~c-~~~k~~gi~i~tIgf~~~~~~~-~~l~~cas~~~~yf~a--~~~~~L~~aF~~Ia~---~I~~lr~s~~~~ 419 (420)
T Consensus 424 --sC~~eVkqsGaIiHtiALGpsAa~ele~lS~mT-GG~~fYa~D~~~~NgLidAFg~lsS~~~~~sQ~~lQLESk 496 (874)
T TIGR00868 424 --SCIEEVKQSGAIIHTIALGPSAAKELEELSDMT-GGLRFYASDEADNNGLIDAFGALSSGNGSVSQQSLQLESK 496 (874)
T ss_pred --ECHHHHHCCCEEEEEEECCHHHHHHHHHHHHHC-CCCEEEEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf --130554109808998507845899999987333-8711334133331414546642214761255555555432