HHsearch alignment for GI: 254781110 and conserved domain: cd01455
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=96.22 E-value=0.092 Score=30.02 Aligned_cols=180 Identities=18% Similarity=0.220 Sum_probs=102.7
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC---CCCCC
Q ss_conf 012210223242233578766667534676653067889998999985104678765543022320487643---12445
Q gi|254781110|r 193 IELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVE---KNIEP 269 (420)
Q Consensus 193 ~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 269 (420)
T Consensus 3 lr~v~DvSgSMYRFNg---------------~DgRL~R~lEa~~MvMEaf~g~e~k~~ydIvGHSGd~~~I~lV~~~~~P 67 (191)
T cd01455 3 LKLVVDVSGSMYRFNG---------------YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFVKTNHPP 67 (191)
T ss_pred EEEEEECCCCEEEECC---------------CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 6999973544233047---------------5328999999999999986175400578875026887751023489999
Q ss_pred CCCHHH--HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 778488--999999864046788765388999999861310123345543347767787766624899606867777765
Q gi|254781110|r 270 SWGTEK--VRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSN 347 (420)
Q Consensus 270 t~~~~~--~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~ 347 (420)
T Consensus 68 k~~keRl~vl~~M~AHs-QyC~sGD~Tlea~~~Ai~~l~a~~d-----------------~De~fVivlSDANL~RYgI- 128 (191)
T cd01455 68 KNNKERLETLKMMHAHS-QFCWSGDHTVEATEFAIKELAAKED-----------------FDEAIVIVLSDANLERYGI- 128 (191)
T ss_pred CCHHHHHHHHHHHHHHH-HHEECCCCHHHHHHHHHHHHHHCCC-----------------CCCCEEEEECCCCHHHCCC-
T ss_conf 86689999999863120-1002588448999999998753026-----------------7760899981476443188-
Q ss_pred CHHHHHHHHHH-HCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf 34899999999-78987999995489778999998621898279817989999999999987
Q gi|254781110|r 348 VNTIKICDKAK-ENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQNISQL 408 (420)
Q Consensus 348 ~~~~~~c~~~k-~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF~~Ia~~ 408 (420)
T Consensus 129 -~p~~l~~~l~~~p~V~a~~IfIgslg~eA~~l~~~l-P~G~~fVc~dt~~lP~il~qIfts 188 (191)
T cd01455 129 -QPKKLADALAREPNVNAFVIFIGSLSDEADQLQREL-PAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred -CHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHC-CCCCEEEECCHHHHHHHHHHHHHH
T ss_conf -989999997338776689999735167999999748-997417853653678999999887