HHsearch alignment for GI: 254781110 and conserved domain: cd01463
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.55 E-value=7.5e-13 Score=102.20 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 34432012210223242233578766667534676653067889998999985104678765543022320487643124
Q gi|254781110|r 188 RPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNI 267 (420)
Q Consensus 188 ~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (420)
T Consensus 11 ~~Pkdvv~vlD~SGSM~--------------------g~kl~~ak~a~~~il~~L~~~D------~~~iv~Fs~~~~~~~ 64 (190)
T cd01463 11 TSPKDIVILLDVSGSMT--------------------GQRLHLAKQTVSSILDTLSDND------FFNIITFSNEVNPVV 64 (190)
T ss_pred CCCCEEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHCCCCC------EEEEEEECCCCEEEE
T ss_conf 89826999997999889--------------------7349999999999998199877------999999689753630
Q ss_pred C-----CCCCHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 4-----577848-8999999864046788765388999999861310123345543347767787766624899606867
Q gi|254781110|r 268 E-----PSWGTE-KVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGEN 341 (420)
Q Consensus 268 ~-----lt~~~~-~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~ 341 (420)
T Consensus 65 p~~~~~~~~~t~~n~~~~~~~i~~l~~~G~Tn~~~al~~A~~~l~~~~~~~---------~~~~~~~~~~~IillTDG~~ 135 (190)
T cd01463 65 PCFNDTLVQATTSNKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSN---------HSGSRSQCNQAIMLITDGVP 135 (190)
T ss_pred CCCCCCEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCEEEEEECCCC
T ss_conf 245684336899999999999982857987248999999999998742015---------56655555515999836988
Q ss_pred CCCCCCCHHHHHHHHHH--HCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECCH
Q ss_conf 77776534899999999--78987999995489778999998621-89827981798
Q gi|254781110|r 342 NNFKSNVNTIKICDKAK--ENFIKIVTISINASPNGQRLLKTCVS-SPEYHYNVVNA 395 (420)
Q Consensus 342 ~~~~~~~~~~~~c~~~k--~~gi~i~tIgf~~~~~~~~~l~~cas-~~~~yf~a~~~ 395 (420)
T Consensus 136 ~~~~---~i~~~~~~~~~~~~~i~ift~G~G~~~~d~~~L~~iA~~~~G~y~~I~~~ 189 (190)
T cd01463 136 ENYK---EIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred CCHH---HHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 7578---89999999755799879999996799778799999998099569978889