HHsearch alignment for GI: 254781110 and conserved domain: cd01466
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.70 E-value=2.1e-15 Score=118.78 Aligned_cols=152 Identities=21% Similarity=0.193 Sum_probs=114.8
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 20122102232422335787666675346766530678899989999851046787655430223204876431244577
Q gi|254781110|r 192 LIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSW 271 (420)
Q Consensus 192 ~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 271 (420)
T Consensus 2 div~vlD~SGSM~--------------------g~~l~~~k~a~~~~~~~L~~------~d~v~iV~F~~~a~~~~pl~~ 55 (155)
T cd01466 2 DLVAVLDVSGSMA--------------------GDKLQLVKHALRFVISSLGD------ADRLSIVTFSTSAKRLSPLRR 55 (155)
T ss_pred EEEEEEECCCCCC--------------------CHHHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCEEEECCEE
T ss_conf 3999990898988--------------------73899999999999984897------674899995687426204603
Q ss_pred CHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 84889999-99864046788765388999999861310123345543347767787766624899606867777765348
Q gi|254781110|r 272 GTEKVRQY-VTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNT 350 (420)
Q Consensus 272 ~~~~~~~~-i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~~~~~~ 350 (420)
T Consensus 56 ~~~~~~~~~~~~i~~l~~~GgT~i~~gl~~a~~~l~~~~----------------~~~~~~~IiLlTDG~~n~~------ 113 (155)
T cd01466 56 MTAKGKRSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRR----------------QKNPVASIMLLSDGQDNHG------ 113 (155)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC----------------CCCCCEEEEEECCCCCCHH------
T ss_conf 799999999998753776888726799999999998436----------------6898308999826986405------
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEEC
Q ss_conf 9999999978987999995489778999998621-898279817
Q gi|254781110|r 351 IKICDKAKENFIKIVTISINASPNGQRLLKTCVS-SPEYHYNVV 393 (420)
Q Consensus 351 ~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas-~~~~yf~a~ 393 (420)
T Consensus 114 -~~~~~~~~~~i~i~tiGiG~~~d~~-lL~~iA~~~gG~~~~v~ 155 (155)
T cd01466 114 -AVVLRADNAPIPIHTFGLGASHDPA-LLAFIAEITGGTFSYVK 155 (155)
T ss_pred -HHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHCCCCEEEEEC
T ss_conf -7789987179739999978867899-99999976997799949