HHsearch alignment for GI: 254781110 and conserved domain: cd01473
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.51 E-value=1.3e-11 Score=94.06 Aligned_cols=179 Identities=14% Similarity=0.142 Sum_probs=122.0
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 3201221022324223357876666753467665306788-999899998510467876554302232048764312445
Q gi|254781110|r 191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAA-LKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP 269 (420)
Q Consensus 191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (420)
T Consensus 1 ~DivFllD~S~SIg~~--------------------nf~~~v~~F~~~lv~~f---~Ig~~~~rvgvv~yS~~~~~~~~f 57 (192)
T cd01473 1 YDLTLILDESASIGYS--------------------NWRKDVIPFTEKIINNL---NISKDKVHVGILLFAEKNRDVVPF 57 (192)
T ss_pred CCEEEEEECCCCCCHH--------------------HHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEECCCCCEEEEC
T ss_conf 9789999389986667--------------------76999999999999875---659896199999955887401323
Q ss_pred CC----CHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 77----848899999986404-6788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r 270 SW----GTEKVRQYVTRDMDS-LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420)
Q Consensus 270 t~----~~~~~~~~i~~~~~~-~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420)
T Consensus 58 ~~~~~~~k~~~l~~i~~l~~~~~~gg~T~tg~AL~~~~~~~~~~~--------------g~R~~vpkv~IvlTDG~s~~~ 123 (192)
T cd01473 58 SDEERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHG--------------NRRKDAPKVTMLFTDGNDTSA 123 (192)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC--------------CCCCCCCEEEEEEECCCCCCC
T ss_conf 554434899999999998731468982479999999999863467--------------888899749999956998873
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CC---EEEECCHHHHHHHHHHHHHHH
Q ss_conf 765348999999997898799999548977899999862189--82---798179899999999999874
Q gi|254781110|r 345 KSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EY---HYNVVNADSLIHVFQNISQLM 409 (420)
Q Consensus 345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~---yf~a~~~~~L~~aF~~Ia~~I 409 (420)
T Consensus 124 ~-~~~~~~~a~~lr~~gV~i~avGVg~~-~~~e-L~~iag~~~~~~~c~~~~~~~fd~l~~i~~~l~~~v 190 (192)
T cd01473 124 S-KKELQDISLLYKEENVKLLVVGVGAA-SENK-LKLLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKI 190 (192)
T ss_pred C-HHHHHHHHHHHHHCCCEEEEEEECCC-CHHH-HHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 1-67899999999987978999980637-9999-999869998899775799479789999999999972