HHsearch alignment for GI: 254781110 and conserved domain: cd01473

>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.51  E-value=1.3e-11  Score=94.06  Aligned_cols=179  Identities=14%  Similarity=0.142  Sum_probs=122.0

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             3201221022324223357876666753467665306788-999899998510467876554302232048764312445
Q gi|254781110|r  191 FLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAA-LKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEP  269 (420)
Q Consensus       191 ~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (420)
T Consensus         1 ~DivFllD~S~SIg~~--------------------nf~~~v~~F~~~lv~~f---~Ig~~~~rvgvv~yS~~~~~~~~f   57 (192)
T cd01473           1 YDLTLILDESASIGYS--------------------NWRKDVIPFTEKIINNL---NISKDKVHVGILLFAEKNRDVVPF   57 (192)
T ss_pred             CCEEEEEECCCCCCHH--------------------HHHHHHHHHHHHHHHHC---CCCCCCEEEEEEEECCCCCEEEEC
T ss_conf             9789999389986667--------------------76999999999999875---659896199999955887401323


Q ss_pred             CC----CHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             77----848899999986404-6788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r  270 SW----GTEKVRQYVTRDMDS-LILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF  344 (420)
Q Consensus       270 t~----~~~~~~~~i~~~~~~-~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~  344 (420)
T Consensus        58 ~~~~~~~k~~~l~~i~~l~~~~~~gg~T~tg~AL~~~~~~~~~~~--------------g~R~~vpkv~IvlTDG~s~~~  123 (192)
T cd01473          58 SDEERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHG--------------NRRKDAPKVTMLFTDGNDTSA  123 (192)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC--------------CCCCCCCEEEEEEECCCCCCC
T ss_conf             554434899999999998731468982479999999999863467--------------888899749999956998873


Q ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CC---EEEECCHHHHHHHHHHHHHHH
Q ss_conf             765348999999997898799999548977899999862189--82---798179899999999999874
Q gi|254781110|r  345 KSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSP--EY---HYNVVNADSLIHVFQNISQLM  409 (420)
Q Consensus       345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~--~~---yf~a~~~~~L~~aF~~Ia~~I  409 (420)
T Consensus       124 ~-~~~~~~~a~~lr~~gV~i~avGVg~~-~~~e-L~~iag~~~~~~~c~~~~~~~fd~l~~i~~~l~~~v  190 (192)
T cd01473         124 S-KKELQDISLLYKEENVKLLVVGVGAA-SENK-LKLLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKI  190 (192)
T ss_pred             C-HHHHHHHHHHHHHCCCEEEEEEECCC-CHHH-HHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             1-67899999999987978999980637-9999-999869998899775799479789999999999972