HHsearch alignment for GI: 254781110 and conserved domain: cd01480
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.66 E-value=2.3e-14 Score=112.08 Aligned_cols=172 Identities=18% Similarity=0.125 Sum_probs=129.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCCCCEEEECCCCCCCCC
Q ss_conf 43201221022324223357876666753467665306788999899998510467---876554302232048764312
Q gi|254781110|r 190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLL---SHVKEDVYMGLIGYTTRVEKN 266 (420)
Q Consensus 190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 266 (420)
T Consensus 2 pvDlvFllD~S~Sv~--------------------~~~F~~~k~Fv~~lv~~f~~~~~~~i~~~~~rVgvv~ys~~~~~~ 61 (186)
T cd01480 2 PVDITFVLDSSESVG--------------------LQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVE 61 (186)
T ss_pred CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEE
T ss_conf 746999996889878--------------------789999999999999998530134568774389899855842798
Q ss_pred CCCCC---CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 44577---848899999986404678876538899999986131012334554334776778776662489960686777
Q gi|254781110|r 267 IEPSW---GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN 343 (420)
Q Consensus 267 ~~lt~---~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~ 343 (420)
T Consensus 62 ~~~~~~~~~~~~l~~~I~~i~--y~gG~T~tg~AL~~a~~~~~~~----------------~r~~~~kvlvliTDG~S~~ 123 (186)
T cd01480 62 AGFLRDIRNYTSLKEAVDNLE--YIGGGTFTDCALKYATEQLLEG----------------SHQKENKFLLVITDGHSDG 123 (186)
T ss_pred ECCCCCCCCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHC----------------CCCCCCEEEEEEECCCCCC
T ss_conf 604777588999999997501--3589862999999999998613----------------6789853899984587666
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf 77653489999999978987999995489778999998621898279817989999999
Q gi|254781110|r 344 FKSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVF 402 (420)
Q Consensus 344 ~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF 402 (420)
T Consensus 124 ~~-~~~~~~aa~~lr~~GV~ifaVGVG~~~-~-~eL~~IAs~p~~~~~~~~f~~L~~~~ 179 (186)
T cd01480 124 SP-DGGIEKAVNEADHLGIKIFFVAVGSQN-E-EPLSRIACDGKSALYRENFAELLWSF 179 (186)
T ss_pred CC-CHHHHHHHHHHHHCCCEEEEEEECCCC-H-HHHHHHHCCCCCEEEECCHHHHHCCH
T ss_conf 74-066999999999879899999947488-7-99999858997389736899870111