HHsearch alignment for GI: 254781110 and conserved domain: cd01480

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.66  E-value=2.3e-14  Score=112.08  Aligned_cols=172  Identities=18%  Similarity=0.125  Sum_probs=129.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCCCCEEEECCCCCCCCC
Q ss_conf             43201221022324223357876666753467665306788999899998510467---876554302232048764312
Q gi|254781110|r  190 IFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLL---SHVKEDVYMGLIGYTTRVEKN  266 (420)
Q Consensus       190 ~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  266 (420)
T Consensus         2 pvDlvFllD~S~Sv~--------------------~~~F~~~k~Fv~~lv~~f~~~~~~~i~~~~~rVgvv~ys~~~~~~   61 (186)
T cd01480           2 PVDITFVLDSSESVG--------------------LQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVE   61 (186)
T ss_pred             CEEEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEE
T ss_conf             746999996889878--------------------789999999999999998530134568774389899855842798


Q ss_pred             CCCCC---CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             44577---848899999986404678876538899999986131012334554334776778776662489960686777
Q gi|254781110|r  267 IEPSW---GTEKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNN  343 (420)
Q Consensus       267 ~~lt~---~~~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~  343 (420)
T Consensus        62 ~~~~~~~~~~~~l~~~I~~i~--y~gG~T~tg~AL~~a~~~~~~~----------------~r~~~~kvlvliTDG~S~~  123 (186)
T cd01480          62 AGFLRDIRNYTSLKEAVDNLE--YIGGGTFTDCALKYATEQLLEG----------------SHQKENKFLLVITDGHSDG  123 (186)
T ss_pred             ECCCCCCCCHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHC----------------CCCCCCEEEEEEECCCCCC
T ss_conf             604777588999999997501--3589862999999999998613----------------6789853899984587666


Q ss_pred             CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf             77653489999999978987999995489778999998621898279817989999999
Q gi|254781110|r  344 FKSNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVF  402 (420)
Q Consensus       344 ~~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~~~~~l~~cas~~~~yf~a~~~~~L~~aF  402 (420)
T Consensus       124 ~~-~~~~~~aa~~lr~~GV~ifaVGVG~~~-~-~eL~~IAs~p~~~~~~~~f~~L~~~~  179 (186)
T cd01480         124 SP-DGGIEKAVNEADHLGIKIFFVAVGSQN-E-EPLSRIACDGKSALYRENFAELLWSF  179 (186)
T ss_pred             CC-CHHHHHHHHHHHHCCCEEEEEEECCCC-H-HHHHHHHCCCCCEEEECCHHHHHCCH
T ss_conf             74-066999999999879899999947488-7-99999858997389736899870111