HHsearch alignment of GI: 254781110 and MMDB domain: 1pt6_A_
>1pt6_A (A:) Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens}
Probab=99.35 E-value=4.1e-11 Score=90.46 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=124.3
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312
Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420)
Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420)
.....++.|++|.|+||. .++..+.+...+...+.. .....+++++.|++.....
T Consensus 4 ~~~~~divfvlD~SgSM~----------------------~~~~~~~~~~~~~~~l~~---~~~~~~v~iv~f~~~~~~~ 58 (213)
T 1pt6_A 4 CSTQLDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMDI---GPKQTQVGIVQYGENVTHE 58 (213)
T ss_dssp ---CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSCB---STTSBEEEEEEESSSEEEE
T ss_pred CCCCEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHCC---CCCCCEEEEEEEEEEEEEE
T ss_conf 998448999997888876----------------------899999999999997145---8887389999996447899
Q ss_pred CCCCCCH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 4457784--88999999864046788765388999999861310123345543347767787766624899606867777
Q gi|254781110|r 267 IEPSWGT--EKVRQYVTRDMDSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNF 344 (420)
Q Consensus 267 ~~lt~~~--~~~~~~i~~~~~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~ 344 (420)
.+++... ......+..+. ..+++....|...+........ ......+..+|++|++|||.++..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~iiliTDG~~~~~ 124 (213)
T 1pt6_A 59 FNLNKYSSTEEVLVAAKKIV---QRGGRQTMTALGTDTARKEAFT-----------EARGARRGVKKVMVIVTDGESHDN 124 (213)
T ss_dssp ECTTTCSSHHHHHHHHHTCC---CCCCSSCCHHHHHHHHHHTTTS-----------GGGTCCTTCEEEEEEEESSCCSCS
T ss_pred EECCCCCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHCC-----------CCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 82666676899999998787---6168545026777788887514-----------223777899547999956888884
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHHHHCCE
Q ss_conf 765348999999997898799999548977--------89999986218--9827981798999999999998742025
Q gi|254781110|r 345 KSNVNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSS--PEYHYNVVNADSLIHVFQNISQLMVHRK 413 (420)
Q Consensus 345 ~~~~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~--~~~yf~a~~~~~L~~aF~~Ia~~I~~lr 413 (420)
. ........+|+.|++||+||+|.+.+ ....++..++. +++||.+.+.++|.++|+.|.+.|.+..
T Consensus 125 ~---~~~~~~~~~~~~~v~i~~igig~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 200 (213)
T 1pt6_A 125 H---RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALE 200 (213)
T ss_dssp H---HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC--
T ss_pred H---HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 2---089999999988998999997166554443431359999998669985508992899999999999999983566