HHsearch alignment of GI: 254781110 and MMDB domain: 2b2x_A_
>2b2x_A (A:) Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus}
Probab=99.44 E-value=7.8e-12 Score=95.16 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=133.3
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 43443201221022324223357876666753467665306788999899998510467876554302232048764312
Q gi|254781110|r 187 ERPIFLIELVVDLSGSMHCAMNSDPEDVNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKN 266 (420)
Q Consensus 187 ~~~~~~~~~~~d~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (420)
.....++.|++|.|+||. .++..+.+...++..+... .+..+++++.|++.....
T Consensus 19 ~~~~~di~~viD~SgSM~----------------------~~~~~~~~~~~~~~~l~~~---~~~~~v~ii~f~~~~~~~ 73 (223)
T 2b2x_A 19 CSTQLDIVIVLDGSNSIY----------------------PWESVIAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHE 73 (223)
T ss_dssp ---CEEEEEEEECSTTCC----------------------CHHHHHHHHHHHHTTSCCS---TTSCCEEEEEESSSEEEE
T ss_pred CCCCEEEEEEEECCCCCC----------------------CHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCEEEE
T ss_conf 998657999995889872----------------------7999999999998663458---886079999974005785
Q ss_pred CCCCCCHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 445778488999999864-0467887653889999998613101233455433477677877666248996068677777
Q gi|254781110|r 267 IEPSWGTEKVRQYVTRDM-DSLILKPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK 345 (420)
Q Consensus 267 ~~lt~~~~~~~~~i~~~~-~~~~~g~T~~~~gl~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~k~iil~TDG~~~~~~ 345 (420)
.+++.............. .....|+|+...++..+...+..... ......+|+++++|||.++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ivliTDG~~~~~~ 140 (223)
T 2b2x_A 74 FNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEAR-------------GARRGVKKVMVIVTDGESHDNY 140 (223)
T ss_dssp ECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGG-------------TCCTTSEEEEEEEESSCCTTGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCEEEEEEECCCCCCCH
T ss_conf 275455679999999975454433201015778777776224323-------------7887873379998468877623
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 65348999999997898799999548977--------899999862189--82798179899999999999874202
Q gi|254781110|r 346 SNVNTIKICDKAKENFIKIVTISINASPN--------GQRLLKTCVSSP--EYHYNVVNADSLIHVFQNISQLMVHR 412 (420)
Q Consensus 346 ~~~~~~~~c~~~k~~gi~i~tIgf~~~~~--------~~~~l~~cas~~--~~yf~a~~~~~L~~aF~~Ia~~I~~l 412 (420)
.....+..++..+|+||+||+|.+.+ ....|+.+|+.+ .++|.+++.++|.++|+.|.+.|...
T Consensus 141 ---~~~~~~~~~~~~~i~i~~igig~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~L~~~~~~i~~~~~~~ 214 (223)
T 2b2x_A 141 ---RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFAL 214 (223)
T ss_dssp ---GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC--
T ss_pred ---HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf ---38999999975398799999706655443343247999999856998661898389999999999999986215